View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20926_low_34 (Length: 251)
Name: NF20926_low_34
Description: NF20926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20926_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 41689160 - 41688935
Alignment:
| Q |
11 |
cacagaaacgaaatgcgtacaaacctaggaagaaacatttttctgacgcatatacatttcaacttttgattaatatccagttaaaaggacattctatttc |
110 |
Q |
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| T |
41689160 |
cacagaaaggaaatgcgtacaaacctaggaagaaacatttttctgacgcatatacatttcaatttttgattaatatccagttaaaaggacattcaatatc |
41689061 |
T |
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| Q |
111 |
aatcatcaatttggttgttattttcaagcattgcatgagccaagtgtatcgttgtttcttaannnnnnnnctattttcaaatgttcaccttgaagataag |
210 |
Q |
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| T |
41689060 |
aatcatcaatgttgttgttattttcaagcattgcatgagccaagtgtatcattgtttcttaattttttttctattatcaaatgttcaccttgaagataag |
41688961 |
T |
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| Q |
211 |
gtagtagtactcctaagcatcaatga |
236 |
Q |
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| T |
41688960 |
gtagtagtactcctaagcatcaatga |
41688935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 41664628 - 41664687
Alignment:
| Q |
22 |
aatgcgtacaaacctaggaagaaacatttttct-gacgcatatacatttcaacttttgatt |
81 |
Q |
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|||||||| |||||| ||||||||||||||| | |||||||| |||||| ||||||||||| |
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| T |
41664628 |
aatgcgta-aaacctcggaagaaacattttttttgacgcataaacatttaaacttttgatt |
41664687 |
T |
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