View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20926_low_43 (Length: 236)
Name: NF20926_low_43
Description: NF20926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20926_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 31605756 - 31605977
Alignment:
| Q |
1 |
tgttcctgggcttgtaatactctatggcagcatggttaagaaaaaatgggccgtaaattcggctttcatggccctatatgcatttgctgctgtactagtt |
100 |
Q |
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| T |
31605756 |
tgttcctgggcttgtaatactctatggcagcatggttaagaaaaaatgggccgtaaattcggctttcatggccctatatgcatttgctgctgtactagtt |
31605855 |
T |
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| Q |
101 |
tgttgggttttatgggcccatcatatgtcatttggtaccaagcttttaccttttgttggaaagccaaactttgccttgagtcagaagtttctactttcta |
200 |
Q |
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| T |
31605856 |
tgttgggttttatgggcccatcatatggcatttggtaccaagcttttaccttttgttggaaagccaaactttgccttgagtcagaagtttctactttcta |
31605955 |
T |
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| Q |
201 |
aggcatcaacaaattattattt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
31605956 |
aggcatcaacaaattattattt |
31605977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 135
Target Start/End: Original strand, 47501254 - 47501386
Alignment:
| Q |
3 |
ttcctgggcttgtaatactctatggcagcatggttaagaaaaaatgggccgtaaattcggctttcatggccctatatgcatttgctgctgtactagtttg |
102 |
Q |
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|||| |||||||| ||||| || || ||| | || ||||||| |||||| |||| || |||||||||||| | ||||||||||| | || || |||| |
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| T |
47501254 |
ttcccgggcttgtcatactttacggaagcctagtgaagaaaacatgggctataaactcagctttcatggccttctatgcatttgcatccgttctcctttg |
47501353 |
T |
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| Q |
103 |
ttgggttttatgggcccatcatatgtcatttgg |
135 |
Q |
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|||||||| |||||| | || ||||||||||| |
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| T |
47501354 |
ttgggtttcatgggcataccaaatgtcatttgg |
47501386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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