View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20926_low_49 (Length: 205)

Name: NF20926_low_49
Description: NF20926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20926_low_49
NF20926_low_49
[»] chr1 (7 HSPs)
chr1 (21-191)||(14276567-14276734)
chr1 (24-136)||(24821610-24821722)
chr1 (27-191)||(1986566-1986727)
chr1 (24-136)||(18960526-18960638)
chr1 (21-131)||(20179153-20179263)
chr1 (24-78)||(21756528-21756582)
chr1 (150-191)||(1979200-1979241)
[»] chr7 (15 HSPs)
chr7 (21-191)||(14639289-14639456)
chr7 (20-191)||(13871534-13871702)
chr7 (20-191)||(19630408-19630576)
chr7 (21-191)||(15180823-15180990)
chr7 (24-136)||(612052-612164)
chr7 (21-191)||(4113618-4113785)
chr7 (24-98)||(13934894-13934968)
chr7 (150-191)||(5386353-5386394)
chr7 (150-191)||(6540339-6540380)
chr7 (150-191)||(8506912-8506953)
chr7 (150-191)||(16136622-16136663)
chr7 (150-191)||(26352737-26352778)
chr7 (150-191)||(32104242-32104283)
chr7 (150-191)||(44903219-44903260)
chr7 (150-191)||(46502976-46503017)
[»] chr8 (10 HSPs)
chr8 (21-191)||(12920916-12921083)
chr8 (21-191)||(18238029-18238196)
chr8 (21-191)||(18247480-18247647)
chr8 (21-191)||(25045890-25046057)
chr8 (20-191)||(33596406-33596574)
chr8 (21-191)||(20749712-20749879)
chr8 (24-191)||(45493727-45493891)
chr8 (21-191)||(20750784-20750951)
chr8 (150-191)||(21207408-21207449)
chr8 (150-191)||(21992562-21992603)
[»] chr5 (14 HSPs)
chr5 (20-191)||(22452352-22452519)
chr5 (21-191)||(5605883-5606050)
chr5 (21-191)||(24295091-24295257)
chr5 (21-191)||(30449120-30449287)
chr5 (24-136)||(723052-723164)
chr5 (21-191)||(24417921-24418088)
chr5 (24-191)||(15325289-15325453)
chr5 (24-191)||(18713316-18713480)
chr5 (21-136)||(21923414-21923529)
chr5 (27-191)||(20953603-20953764)
chr5 (21-131)||(21080857-21080968)
chr5 (150-191)||(18385602-18385643)
chr5 (150-191)||(26196762-26196803)
chr5 (150-191)||(33945182-33945223)
[»] chr3 (7 HSPs)
chr3 (21-191)||(48983984-48984151)
chr3 (25-136)||(19690118-19690229)
chr3 (21-191)||(28356077-28356244)
chr3 (21-131)||(2160570-2160680)
chr3 (21-131)||(40088217-40088327)
chr3 (150-191)||(8978708-8978749)
chr3 (150-191)||(9542998-9543039)
[»] chr2 (5 HSPs)
chr2 (21-191)||(1796267-1796434)
chr2 (24-136)||(24996469-24996581)
chr2 (27-191)||(27164418-27164579)
chr2 (150-191)||(9508202-9508243)
chr2 (150-191)||(18657080-18657121)
[»] scaffold0010 (1 HSPs)
scaffold0010 (21-191)||(262171-262338)
[»] scaffold1583 (1 HSPs)
scaffold1583 (68-191)||(1-121)
[»] chr4 (7 HSPs)
chr4 (24-136)||(14912717-14912829)
chr4 (24-136)||(117469-117581)
chr4 (21-191)||(26817595-26817762)
chr4 (21-191)||(54694304-54694471)
chr4 (24-191)||(14937622-14937786)
chr4 (21-131)||(14532592-14532702)
chr4 (150-191)||(6698080-6698121)
[»] chr6 (7 HSPs)
chr6 (25-136)||(9009332-9009443)
chr6 (24-136)||(9000166-9000278)
chr6 (21-191)||(18416190-18416357)
chr6 (21-191)||(27745506-27745673)
chr6 (150-191)||(16903808-16903849)
chr6 (150-191)||(18165081-18165122)
chr6 (150-191)||(31362682-31362723)
[»] scaffold1096 (1 HSPs)
scaffold1096 (49-191)||(2782-2922)
[»] scaffold0028 (2 HSPs)
scaffold0028 (24-136)||(107974-108086)
scaffold0028 (21-191)||(98818-98985)
[»] scaffold0482 (1 HSPs)
scaffold0482 (21-191)||(8036-8203)
[»] scaffold0764 (1 HSPs)
scaffold0764 (27-191)||(5317-5478)
[»] scaffold0313 (2 HSPs)
scaffold0313 (27-191)||(1142-1303)
scaffold0313 (27-191)||(15299-15460)
[»] scaffold0611 (1 HSPs)
scaffold0611 (150-191)||(3777-3818)
[»] scaffold0254 (1 HSPs)
scaffold0254 (150-191)||(12415-12456)


Alignment Details
Target: chr1 (Bit Score: 106; Significance: 3e-53; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 21 - 191
Target Start/End: Complemental strand, 14276734 - 14276567
Alignment:
Q  21 tcagctgcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacga 120  Q
    ||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| |||||||    
T  14276734 tcagcagcaaattgttgctctcaggtattatggataagaaatcaattagaagatttctcaatcaggtatgaaaacattcccatattttgtgacaatacga 14276635  T
Q  121 gtgcaataaatttatctnnnnnnnntcccattcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    |||||||||||||||||        ||| ||||||||||||||||| ||||||||||||||||||||||||    
T  14276634 gtgcaataaatttatct---aaaaatcctattcagcattcaagatcaaaacacattgaaataaaacatcat 14276567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 24 - 136
Target Start/End: Complemental strand, 24821722 - 24821610
Alignment:
Q  24 gctgcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacgagtg 123  Q
    ||||||||||| |||||||||||| ||||||| |||||||||||||||||||| ||  ||||||| | ||||||||  ||||| || |||||||| ||||    
T  24821722 gctgcaaactgctgctctcaggtattatggattagaaatcaattagaagatttttctctaaggtacgcaaatattcaaatattatgcgataatactagtg 24821623  T
Q  124 caataaatttatc 136  Q
    | |||||||||||    
T  24821622 ctataaatttatc 24821610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 27 - 191
Target Start/End: Complemental strand, 1986727 - 1986566
Alignment:
Q  27 gcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacgagtgcaa 126  Q
    ||||| ||||||||||| ||  ||||||| ||||||||| | |||||||  ||| |||||||  ||||| ||||||| || ||||||||||| ||||| |    
T  1986727 gcaaattgttgctctcaagtcttatggatcagaaatcaaatggaagattattcactaaggtacaaaaatgttcctattttgtgtgataatacaagtgcta 1986628  T
Q  127 taaatttatctnnnnnnnntcccattcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    ||||| | |||        ||| ||||||||||| |||||||||||||||||||| |||||||||    
T  1986627 taaatctttct---aaaaatccaattcagcattctagatctaaacacattgaaattaaacatcat 1986566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 24 - 136
Target Start/End: Original strand, 18960526 - 18960638
Alignment:
Q  24 gctgcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacgagtg 123  Q
    |||||||| || |||||||||||| ||| ||| | |||||||||||||||||||||  | |||||   ||||||||  ||||| ||||||||||| ||||    
T  18960526 gctgcaaattgctgctctcaggtattatagatcaaaaatcaattagaagatttctctctcaggtacacaaatattcaaatattgtgtgataatactagtg 18960625  T
Q  124 caataaatttatc 136  Q
    | |||||||||||    
T  18960626 ctataaatttatc 18960638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 131
Target Start/End: Original strand, 20179153 - 20179263
Alignment:
Q  21 tcagctgcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacga 120  Q
    |||||||||| | |||||||||| ||| ||||||||| ||||||  | ||||||| |||  |||||||   ||| ||||||||   |||||||||||| |    
T  20179153 tcagctgcaagcagttgctctcaagtattatggataaaaaatcagctggaagattactccgtaaggtacacaaaaattcctattcattgtgataatacaa 20179252  T
Q  121 gtgcaataaat 131  Q
    |||| ||||||    
T  20179253 gtgctataaat 20179263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 21756528 - 21756582
Alignment:
Q  24 gctgcaaactgttgctctcaggtactatggataagaaatcaattagaagatttct 78  Q
    ||||||||||  |||||||| ||| ||||||| ||||||| ||||||||||||||    
T  21756528 gctgcaaactactgctctcaagtattatggattagaaatctattagaagatttct 21756582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 1979241 - 1979200
Alignment:
Q  150 attcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    ||||||||||| || ||||||||||||||||| |||||||||    
T  1979241 attcagcattctaggtctaaacacattgaaattaaacatcat 1979200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 5e-49; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 21 - 191
Target Start/End: Complemental strand, 14639456 - 14639289
Alignment:
Q  21 tcagctgcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacga 120  Q
    ||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||| |    
T  14639456 tcagcagcaaactgttgctctcaggtattatggataagaaatcagttagaagatttctcaatcaggtatgaaaacattcccatattttgtgacaatacta 14639357  T
Q  121 gtgcaataaatttatctnnnnnnnntcccattcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    |||| ||||||||||||         |||||||||||||||||||| ||||||||||||||||||||||||    
T  14639356 gtgcgataaatttatctaaaaac---cccattcagcattcaagatcaaaacacattgaaataaaacatcat 14639289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 20 - 191
Target Start/End: Original strand, 13871534 - 13871702
Alignment:
Q  20 atcagctgcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacg 119  Q
    |||||| || ||||| || || |||||| ||||||||| ||||||| | || ||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  13871534 atcagccgccaactgctgttcccaggtattatggataaaaaatcaacttgaggatttctcaataaggtacgaaaatattcccatattttgtgataatacg 13871633  T
Q  120 agtgcaataaatttatctnnnnnnnntcccattcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    |||||||| ||||||||         |||||| |||||||||||||| | ||||||||| || |||||||||    
T  13871634 agtgcaattaatttatc---aaaaaatcccatccagcattcaagatcaagacacattgagattaaacatcat 13871702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 20 - 191
Target Start/End: Original strand, 19630408 - 19630576
Alignment:
Q  20 atcagctgcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacg 119  Q
    ||||||||  |||||||| || |||||| ||||||| | ||||||| | || ||||||||||||||||| ||||||||||| ||||||| ||||||||||    
T  19630408 atcagctgtcaactgttgttcccaggtattatggatcaaaaatcaacttgaggatttctcaataaggtacgaaaatattcccatattttttgataatacg 19630507  T
Q  120 agtgcaataaatttatctnnnnnnnntcccattcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    |||||||| ||||||||         |||||| |||||||||||||| ||||||||||| || |||||||||    
T  19630508 agtgcaattaatttatc---aaaaaatcccatccagcattcaagatcaaaacacattgagattaaacatcat 19630576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 21 - 191
Target Start/End: Original strand, 15180823 - 15180990
Alignment:
Q  21 tcagctgcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacga 120  Q
    ||||| || |||||||| ||||| || || ||||| | ||||||| | || |||||||||||||||||   |||||||||  |||||||||| ||||| |    
T  15180823 tcagcagccaactgttgttctcaagttctctggattaaaaatcaacttgaggatttctcaataaggtacacaaatattccagtattttgtgacaatacaa 15180922  T
Q  121 gtgcaataaatttatctnnnnnnnntcccattcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    ||||||||||||||||         ||||||||| ||||||||||| ||||| ||||||||||||||||||    
T  15180923 gtgcaataaatttatc---aaagaatcccattcaacattcaagatcaaaacatattgaaataaaacatcat 15180990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 24 - 136
Target Start/End: Original strand, 612052 - 612164
Alignment:
Q  24 gctgcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacgagtg 123  Q
    ||||||||||| |||||||||||| ||||||| |||||||||||||||||||| ||  ||||||| | ||||||||  ||||| || |||||||| | ||    
T  612052 gctgcaaactgctgctctcaggtattatggattagaaatcaattagaagatttttctctaaggtacgcaaatattcaaatattatgcgataatactaatg 612151  T
Q  124 caataaatttatc 136  Q
    | |||||||||||    
T  612152 ctataaatttatc 612164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 21 - 191
Target Start/End: Complemental strand, 4113785 - 4113618
Alignment:
Q  21 tcagctgcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacga 120  Q
    ||||| || |||||||| ||||| || || ||||| | ||||||| | || |||||||||||||||||   |||||||||  |||||||||| ||||| |    
T  4113785 tcagcagccaactgttgttctcaagttctctggattaaaaatcaacttgaggatttctcaataaggtacacaaatattccagtattttgtgacaatacaa 4113686  T
Q  121 gtgcaataaatttatctnnnnnnnntcccattcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    ||||||||||||||||         ||||||||| | ||||||||| ||||| |||||||| |||||||||    
T  4113685 gtgcaataaatttatc---aaagaatcccattcaacgttcaagatcaaaacatattgaaattaaacatcat 4113618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 24 - 98
Target Start/End: Original strand, 13934894 - 13934968
Alignment:
Q  24 gctgcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatatt 98  Q
    ||||||||||| |||||||||||| ||||||| |||||||||||||||||||| ||| ||||||||  |||||||    
T  13934894 gctgcaaactgctgctctcaggtattatggattagaaatcaattagaagatttttcactaaggtattcaaatatt 13934968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 5386394 - 5386353
Alignment:
Q  150 attcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    ||||||||||| || |||||||| ||||||||||||||||||    
T  5386394 attcagcattctaggtctaaacatattgaaataaaacatcat 5386353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 6540339 - 6540380
Alignment:
Q  150 attcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    ||||||||||| || |||||||| ||||||||||||||||||    
T  6540339 attcagcattctaggtctaaacatattgaaataaaacatcat 6540380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 8506912 - 8506953
Alignment:
Q  150 attcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    ||||||||||| || |||||||| ||||||||||||||||||    
T  8506912 attcagcattctaggtctaaacatattgaaataaaacatcat 8506953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 16136663 - 16136622
Alignment:
Q  150 attcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    ||||||||||| || |||||||| ||||||||||||||||||    
T  16136663 attcagcattctaggtctaaacatattgaaataaaacatcat 16136622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 26352778 - 26352737
Alignment:
Q  150 attcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    ||||||||||| || |||||||| ||||||||||||||||||    
T  26352778 attcagcattctaggtctaaacatattgaaataaaacatcat 26352737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 32104242 - 32104283
Alignment:
Q  150 attcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    ||||||||||| || |||||||| ||||||||||||||||||    
T  32104242 attcagcattctaggtctaaacatattgaaataaaacatcat 32104283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 44903219 - 44903260
Alignment:
Q  150 attcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    ||||||||||| || |||||||| ||||||||||||||||||    
T  44903219 attcagcattctaggtctaaacatattgaaataaaacatcat 44903260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 46502976 - 46503017
Alignment:
Q  150 attcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    ||||||||||| || |||||||| ||||||||||||||||||    
T  46502976 attcagcattctaggtctaaacatattgaaataaaacatcat 46503017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 21 - 191
Target Start/End: Original strand, 12920916 - 12921083
Alignment:
Q  21 tcagctgcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacga 120  Q
    ||||| ||||| ||||||||||||||| ||||||||| |||||| ||||||||||||||||| ||||||||||| ||||| ||||||||||| |||||||    
T  12920916 tcagcagcaaattgttgctctcaggtattatggataaaaaatcagttagaagatttctcaatcaggtatgaaaacattcccatattttgtgacaatacga 12921015  T
Q  121 gtgcaataaatttatctnnnnnnnntcccattcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    |||| ||||||||||||        ||| |||||||| |||||||| ||||||||||||||||||||||||    
T  12921016 gtgcgataaatttatct---aaaaatcctattcagcactcaagatcaaaacacattgaaataaaacatcat 12921083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 191
Target Start/End: Original strand, 18238029 - 18238196
Alignment:
Q  21 tcagctgcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacga 120  Q
    ||||| ||||| |||||||| |||||| ||||||| | |||| || |||||||||| |||||||||||   ||||||||| ||||||||||||||||| |    
T  18238029 tcagcagcaaattgttgctcccaggtattatggattaaaaatgaactagaagatttttcaataaggtacacaaatattcccatattttgtgataatacaa 18238128  T
Q  121 gtgcaataaatttatctnnnnnnnntcccattcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    ||||||||||||||||         | ||||||||||||||||||| ||||||||||||||||||||||||    
T  18238129 gtgcaataaatttatc---aaaaaattccattcagcattcaagatcaaaacacattgaaataaaacatcat 18238196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 191
Target Start/End: Original strand, 18247480 - 18247647
Alignment:
Q  21 tcagctgcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacga 120  Q
    ||||| ||||| |||||||| |||||| ||||||| | |||| || |||||||||| |||||||||||   ||||||||| ||||||||||||||||| |    
T  18247480 tcagcagcaaattgttgctcccaggtattatggattaaaaatgaactagaagatttttcaataaggtacacaaatattcccatattttgtgataatacaa 18247579  T
Q  121 gtgcaataaatttatctnnnnnnnntcccattcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    ||||||||||||||||         | ||||||||||||||||||| ||||||||||||||||||||||||    
T  18247580 gtgcaataaatttatc---aaaaaattccattcagcattcaagatcaaaacacattgaaataaaacatcat 18247647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 21 - 191
Target Start/End: Complemental strand, 25046057 - 25045890
Alignment:
Q  21 tcagctgcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacga 120  Q
    ||||| ||||| |||||||| |||||| ||||||| | ||||||| |||||||||| |||||||||||   ||||||||| ||||| ||||| ||||| |    
T  25046057 tcagcagcaaattgttgctcccaggtattatggattaaaaatcaactagaagatttttcaataaggtacacaaatattcccatattctgtgacaatacaa 25045958  T
Q  121 gtgcaataaatttatctnnnnnnnntcccattcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    ||||||||||||||||         || |||||||||||||||||| ||||||||||||||||| ||||||    
T  25045957 gtgcaataaatttatc---aaaaaatctcattcagcattcaagatcaaaacacattgaaataaagcatcat 25045890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 191
Target Start/End: Complemental strand, 33596574 - 33596406
Alignment:
Q  20 atcagctgcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacg 119  Q
    |||||| || ||||| || || |||||| ||||||||| ||||||| | || ||||||||||||||||| ||||||||||| |||||||||||||| ||     
T  33596574 atcagccgccaactgctgttcccaggtattatggataaaaaatcaacttgaggatttctcaataaggtacgaaaatattcccatattttgtgataacaca 33596475  T
Q  120 agtgcaataaatttatctnnnnnnnntcccattcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    |||||||| ||| ||||         |||||| |||||||||||||| ||||| ||||| || |||||||||    
T  33596474 agtgcaattaatctatc---aaaaaatcccatccagcattcaagatcaaaacatattgagattaaacatcat 33596406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 21 - 191
Target Start/End: Original strand, 20749712 - 20749879
Alignment:
Q  21 tcagctgcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacga 120  Q
    ||||| || |||||||| ||||| || || ||||| | ||||||| | || |||||||||||||||||   |||||||||  |||||| ||| ||||  |    
T  20749712 tcagcagccaactgttgttctcaagttctctggattaaaaatcaacttgaggatttctcaataaggtacacaaatattccagtattttatgacaataaaa 20749811  T
Q  121 gtgcaataaatttatctnnnnnnnntcccattcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    ||||||||||||||||         ||||||||| ||||||||||| ||||| ||||||||||||||||||    
T  20749812 gtgcaataaatttatc---aaagaatcccattcaacattcaagatcaaaacatattgaaataaaacatcat 20749879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 24 - 191
Target Start/End: Complemental strand, 45493891 - 45493727
Alignment:
Q  24 gctgcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacgagtg 123  Q
    |||||||| ||||||||||||||| ||||||| ||||||||| |||||||||||||  | ||||| | |||||||   ||  | ||||||||||| ||||    
T  45493891 gctgcaaattgttgctctcaggtattatggattagaaatcaactagaagatttctctctcaggtacgcaaatattaaaattctatgtgataataccagtg 45493792  T
Q  124 caataaatttatctnnnnnnnntcccattcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    | || ||||||||         ||| ||||||||||||||||| |||||||| ||||| || ||||||    
T  45493791 ctattaatttatc---aaaaaatcctattcagcattcaagatcaaaacacatagaaattaagcatcat 45493727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 191
Target Start/End: Original strand, 20750784 - 20750951
Alignment:
Q  21 tcagctgcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacga 120  Q
    ||||| || |||||||| ||||| || || ||||| | ||||||| | || |||||||| ||||||||   |||||||||  |||||||||| ||||| |    
T  20750784 tcagcagctaactgttgttctcaagttctctggattaaaaatcaacttgaggatttctctataaggtacacaaatattccagtattttgtgacaatacaa 20750883  T
Q  121 gtgcaataaatttatctnnnnnnnntcccattcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
     |||||||||||||||         |||||| || ||||||||||| ||||| |||||||| |||||||||    
T  20750884 atgcaataaatttatc---aaagaatcccatccaacattcaagatcaaaacatattgaaattaaacatcat 20750951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 21207449 - 21207408
Alignment:
Q  150 attcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    ||||||||||| || |||||||| ||||||||||||||||||    
T  21207449 attcagcattctaggtctaaacatattgaaataaaacatcat 21207408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 21992603 - 21992562
Alignment:
Q  150 attcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    ||||||||||| || |||||||| ||||||||||||||||||    
T  21992603 attcagcattctaggtctaaacatattgaaataaaacatcat 21992562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 191
Target Start/End: Complemental strand, 22452519 - 22452352
Alignment:
Q  20 atcagctgcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacg 119  Q
    ||||||||| ||||||||| |||||||| ||||||||| ||||||| | || ||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  22452519 atcagctgccaactgttgc-ctcaggtattatggataaaaaatcaacttgaggatttctcaataaggtacgaaaatattcccatattttgtgataatacg 22452421  T
Q  120 agtgcaataaatttatctnnnnnnnntcccattcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    |||||||| ||||||||         |||||| |||||||||||||| ||||||||||| || |||||||||    
T  22452420 agtgcaattaatttatc---aaaaaatcccatccagcattcaagatcaaaacacattgagattaaacatcat 22452352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 21 - 191
Target Start/End: Original strand, 5605883 - 5606050
Alignment:
Q  21 tcagctgcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacga 120  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||   |||||||||  |||||||||||||||| |    
T  5605883 tcagcagcaaactgttgctctcaggtattatggataagaaatcaactcgaagatttctcaataaggtacacaaatattccagtattttgtgataatacaa 5605982  T
Q  121 gtgcaataaatttatctnnnnnnnntcccattcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    |||| |||||||||||         ||||||||| ||||||||||| || || ||||||||||||||||||    
T  5605983 gtgctataaatttatc---aaaaaatcccattcaacattcaagatcaaagcatattgaaataaaacatcat 5606050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 21 - 191
Target Start/End: Complemental strand, 24295257 - 24295091
Alignment:
Q  21 tcagctgcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacga 120  Q
    ||||| ||||| |||||||| |||||| ||||||| | |||| || |||||||||| |||||||||||   ||||||||| ||||||||||||||||| |    
T  24295257 tcagcagcaaattgttgctcccaggtattatggattaaaaatgaactagaagattt-tcaataaggtacacaaatattcccatattttgtgataatacaa 24295159  T
Q  121 gtgcaataaatttatctnnnnnnnntcccattcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    ||||||||||||||||         | ||||||||||||||||||| ||||||||||||||||||||||||    
T  24295158 gtgcaataaatttatc---aaaaaattccattcagcattcaagatcaaaacacattgaaataaaacatcat 24295091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 21 - 191
Target Start/End: Complemental strand, 30449287 - 30449120
Alignment:
Q  21 tcagctgcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacga 120  Q
    ||||| || |||||||| ||||| || || ||||| | ||||||| | ||||||||||||||||||||   |||||||||  |||||||||| ||||| |    
T  30449287 tcagcagccaactgttgttctcaagttctctggattaaaaatcaacttgaagatttctcaataaggtacacaaatattccagtattttgtgacaatacaa 30449188  T
Q  121 gtgcaataaatttatctnnnnnnnntcccattcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    ||||||||||||||||         ||||||||| ||||||||||| ||||| ||||||||||||||||||    
T  30449187 gtgcaataaatttatc---aaagaatcccattcaacattcaagatcaaaacatattgaaataaaacatcat 30449120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 24 - 136
Target Start/End: Complemental strand, 723164 - 723052
Alignment:
Q  24 gctgcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacgagtg 123  Q
    ||||||||||| |||||||||||| ||||||| |||||||||||||||||||| ||  ||||||| | ||||||||  ||||| || |||||||| ||||    
T  723164 gctgcaaactgctgctctcaggtattatggattagaaatcaattagaagatttttctctaaggtacgcaaatattcaaatattatgcgataatactagtg 723065  T
Q  124 caataaatttatc 136  Q
    | |||||||||||    
T  723064 ctataaatttatc 723052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 21 - 191
Target Start/End: Original strand, 24417921 - 24418088
Alignment:
Q  21 tcagctgcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacga 120  Q
    ||||| || |||||||| ||||| || || ||||| | ||||||| | || |||||||||||||||||   |||||||||  |||||||||| ||||| |    
T  24417921 tcagcagccaactgttgttctcaagttctctggattaaaaatcaacttgaggatttctcaataaggtacacaaatattccagtattttgtgacaatacaa 24418020  T
Q  121 gtgcaataaatttatctnnnnnnnntcccattcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    ||||||||||||||||         ||||||||| ||||||||||| ||||| ||||||||||||||||||    
T  24418021 gtgcaataaatttatc---aaagaatcccattcaacattcaagatcaaaacatattgaaataaaacatcat 24418088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 191
Target Start/End: Complemental strand, 15325453 - 15325289
Alignment:
Q  24 gctgcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacgagtg 123  Q
    |||||||| ||||||||||||||| ||||||| ||||||||| |||||||||||||  | ||||| | |||||||   || || ||||||||||| ||||    
T  15325453 gctgcaaattgttgctctcaggtattatggattagaaatcaactagaagatttctctctcaggtacgcaaatattaaaattttatgtgataataccagtg 15325354  T
Q  124 caataaatttatctnnnnnnnntcccattcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    | || ||||||||         ||| ||||||||||||||||| |||||||| ||||| || ||||||    
T  15325353 ctattaatttatc---aaaaaatcctattcagcattcaagatcaaaacacatagaaattaagcatcat 15325289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 191
Target Start/End: Original strand, 18713316 - 18713480
Alignment:
Q  24 gctgcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacgagtg 123  Q
    |||||||| ||||||||||||||| ||||||| ||||||||| |||||||||||||  | ||||| | |||||||   || || ||||||||||| ||||    
T  18713316 gctgcaaattgttgctctcaggtattatggattagaaatcaactagaagatttctctctcaggtacgcaaatattaaaattttatgtgataataccagtg 18713415  T
Q  124 caataaatttatctnnnnnnnntcccattcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    | || ||||||||         ||| ||||||||||||||||| |||||||| ||||| || ||||||    
T  18713416 ctattaatttatc---aaaaaatcctattcagcattcaagatcaaaacacatagaaattaagcatcat 18713480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 21923414 - 21923529
Alignment:
Q  21 tcagctgcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacga 120  Q
    |||||||||| |||||| ||||||||| ||||||||||||||||| | || ||||||||  |||||||   ||||||||  ||| | |||||||||||      
T  21923414 tcagctgcaagctgttgttctcaggtattatggataagaaatcaactcgaggatttctctctaaggtacacaaatattcaaatactatgtgataatactt 21923513  T
Q  121 gtgcaataaatttatc 136  Q
    ||||||| ||||||||    
T  21923514 gtgcaattaatttatc 21923529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 191
Target Start/End: Original strand, 20953603 - 20953764
Alignment:
Q  27 gcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacgagtgcaa 126  Q
    ||||| |||||||||||  |  ||||||| ||||||||| | |||||||  ||| |||||||  ||||| ||||||| || |||||||| || ||||| |    
T  20953603 gcaaattgttgctctcaaatcttatggatcagaaatcaaatggaagattattcactaaggtacaaaaatgttcctattttgtgtgataacacaagtgcta 20953702  T
Q  127 taaatttatctnnnnnnnntcccattcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    ||||| | |||        ||| ||||||||||| || ||||||||||||||||| |||||||||    
T  20953703 taaatctttctaaaaa---tccaattcagcattctaggtctaaacacattgaaattaaacatcat 20953764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 131
Target Start/End: Complemental strand, 21080968 - 21080857
Alignment:
Q  21 tcagctgcaaactgttgctctcaggtactatggat-aagaaatcaattagaagatttctcaataaggta-tgaaaatattcctatattttgtgataatac 118  Q
    |||||||||| | |||||||||||||| ||||||| || |||||| || ||||||| ||||||||||||   |||| ||||||||  |||||||||||||    
T  21080968 tcagctgcaagc-gttgctctcaggtattatggataaaaaaatcagttggaagattactcaataaggtacacaaaaaattcctattctttgtgataatac 21080870  T
Q  119 gagtgcaataaat 131  Q
     | ||| ||||||    
T  21080869 caatgctataaat 21080857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 18385602 - 18385643
Alignment:
Q  150 attcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    ||||||||||| || |||||||| ||||||||||||||||||    
T  18385602 attcagcattctaggtctaaacatattgaaataaaacatcat 18385643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 26196803 - 26196762
Alignment:
Q  150 attcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    ||||||||||| || |||||||| ||||||||||||||||||    
T  26196803 attcagcattctaggtctaaacatattgaaataaaacatcat 26196762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 33945182 - 33945223
Alignment:
Q  150 attcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    ||||||||||| || |||||||| ||||||||||||||||||    
T  33945182 attcagcattctaggtctaaacatattgaaataaaacatcat 33945223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 4e-37; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 21 - 191
Target Start/End: Original strand, 48983984 - 48984151
Alignment:
Q  21 tcagctgcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacga 120  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||   |||||||||  |||||||||||||||| |    
T  48983984 tcagcagcaaactgttgctctcaggtattatggataagaaatcaactcgaagatttctcaataaggtacacaaatattccagtattttgtgataatacaa 48984083  T
Q  121 gtgcaataaatttatctnnnnnnnntcccattcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    |||| |||||||||||         ||||||||| ||||||||||| || || ||||||||||||||||||    
T  48984084 gtgctataaatttatc---aaaaaatcccattcaacattcaagatcaaagcatattgaaataaaacatcat 48984151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 25 - 136
Target Start/End: Original strand, 19690118 - 19690229
Alignment:
Q  25 ctgcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacgagtgc 124  Q
    |||||||||| |||||||||||| ||||||| |||||||||||||||||||||||  ||||||| | ||||||||  ||||| ||  ||||||| |||||    
T  19690118 ctgcaaactgctgctctcaggtattatggattagaaatcaattagaagatttctctctaaggtacgcaaatattcaaatattatgcaataatactagtgc 19690217  T
Q  125 aataaatttatc 136  Q
     |||||||||||    
T  19690218 tataaatttatc 19690229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 21 - 191
Target Start/End: Complemental strand, 28356244 - 28356077
Alignment:
Q  21 tcagctgcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacga 120  Q
    ||||| || |||||||| ||||| || || ||||| | ||||||| | || |||||||||||||||||   |||||||||  |||||||||| ||||| |    
T  28356244 tcagcagccaactgttgttctcaagttctctggattaaaaatcaacttgaggatttctcaataaggtacacaaatattccagtattttgtgacaatacaa 28356145  T
Q  121 gtgcaataaatttatctnnnnnnnntcccattcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    ||||||||||||||||         ||||||||| ||||||||||| ||||| ||||||||||||||||||    
T  28356144 gtgcaataaatttatc---aaagaatcccattcaacattcaagatcaaaacatattgaaataaaacatcat 28356077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 21 - 131
Target Start/End: Original strand, 2160570 - 2160680
Alignment:
Q  21 tcagctgcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacga 120  Q
    |||||||||| | |||||||||||||| ||||||||| ||||||  | ||||||| |||  |||||||   ||| ||||||||   |||||||||||| |    
T  2160570 tcagctgcaagcagttgctctcaggtattatggataaaaaatcagctggaagattactccgtaaggtacacaaaaattcctattcattgtgataatacaa 2160669  T
Q  121 gtgcaataaat 131  Q
    |||| ||||||    
T  2160670 gtgctataaat 2160680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 21 - 131
Target Start/End: Complemental strand, 40088327 - 40088217
Alignment:
Q  21 tcagctgcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacga 120  Q
    |||||||||| | |||||||||||||| ||||||||| ||||||  | ||||||| |||  |||||||   ||| ||||||||   |||||||||||| |    
T  40088327 tcagctgcaagcagttgctctcaggtattatggataaaaaatcagctggaagattactccgtaaggtacacaaaaattcctattcattgtgataatacaa 40088228  T
Q  121 gtgcaataaat 131  Q
    |||| ||||||    
T  40088227 gtgctataaat 40088217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 8978708 - 8978749
Alignment:
Q  150 attcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    ||||||||||| || |||||||| ||||||||||||||||||    
T  8978708 attcagcattctaggtctaaacatattgaaataaaacatcat 8978749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 9542998 - 9543039
Alignment:
Q  150 attcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    ||||||||||| || |||||||| ||||||||||||||||||    
T  9542998 attcagcattctaggtctaaacatattgaaataaaacatcat 9543039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 4e-37; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 21 - 191
Target Start/End: Original strand, 1796267 - 1796434
Alignment:
Q  21 tcagctgcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacga 120  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||   |||||||||  |||||||||||||||| |    
T  1796267 tcagcagcaaactgttgctctcaggtattatggataagaaatcaactcgaagatttctcaataaggtacacaaatattccagtattttgtgataatacaa 1796366  T
Q  121 gtgcaataaatttatctnnnnnnnntcccattcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    |||| |||||||||||         ||||||||| ||||||||||| || || ||||||||||||||||||    
T  1796367 gtgctataaatttatc---aaaaaatcccattcaacattcaagatcaaagcatattgaaataaaacatcat 1796434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 24 - 136
Target Start/End: Original strand, 24996469 - 24996581
Alignment:
Q  24 gctgcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacgagtg 123  Q
    ||||||||||| |||||||||||| ||||||| |||||||||||||||||||| ||  ||||||| | ||||||||  ||||| || |||||||| | ||    
T  24996469 gctgcaaactgctgctctcaggtattatggattagaaatcaattagaagatttttctctaaggtacgcaaatattcaaatattatgcgataatactattg 24996568  T
Q  124 caataaatttatc 136  Q
    | |||||||||||    
T  24996569 ctataaatttatc 24996581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 27 - 191
Target Start/End: Complemental strand, 27164579 - 27164418
Alignment:
Q  27 gcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacgagtgcaa 126  Q
    ||||| ||||||||||| ||  ||||||| ||||||||| | |||||||  ||| |||||||   |||| |||||||  | |||||||| || ||||| |    
T  27164579 gcaaattgttgctctcaagtcttatggatcagaaatcaaatggaagattattcactaaggtacacaaatgttcctattatgtgtgataacacaagtgcta 27164480  T
Q  127 taaatttatctnnnnnnnntcccattcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    ||||| | |||        ||| ||||||||||| || ||||||||||||||||| |||||||||    
T  27164479 taaatctttctaaaaa---tccaattcagcattctaggtctaaacacattgaaattaaacatcat 27164418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 9508243 - 9508202
Alignment:
Q  150 attcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    ||||||||||| || |||||||| ||||||||||||||||||    
T  9508243 attcagcattctaggtctaaacatattgaaataaaacatcat 9508202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 18657080 - 18657121
Alignment:
Q  150 attcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    ||||||||||| || |||||||| ||||||||||||||||||    
T  18657080 attcagcattctaggtctaaacatattgaaataaaacatcat 18657121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 191
Target Start/End: Original strand, 262171 - 262338
Alignment:
Q  21 tcagctgcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacga 120  Q
    ||||| ||||| |||||||| |||||| ||||||| | |||| || |||||||||| |||||||||||   ||||||||| ||||||||||||||||| |    
T  262171 tcagcagcaaattgttgctcccaggtattatggattaaaaatgaactagaagatttttcaataaggtacacaaatattcccatattttgtgataatacaa 262270  T
Q  121 gtgcaataaatttatctnnnnnnnntcccattcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    ||||||||||||||||         | ||||||||||||||||||| ||||||||||||||||||||||||    
T  262271 gtgcaataaatttatc---aaaaaattccattcagcattcaagatcaaaacacattgaaataaaacatcat 262338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1583 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: scaffold1583
Description:

Target: scaffold1583; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 68 - 191
Target Start/End: Original strand, 1 - 121
Alignment:
Q  68 agaagatttctcaataaggtatgaaaatattcctatattttgtgataatacgagtgcaataaatttatctnnnnnnnntcccattcagcattcaagatct 167  Q
    ||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||        ||| |||||||||||||||||     
T  1 agaagatttctcaatcaggtatgaaaacattcccatattttgtgacaatacgagtgcaataaatttatct---aaaaatcctattcagcattcaagatca 97  T
Q  168 aaacacattgaaataaaacatcat 191  Q
    ||||||||||||||||||||||||    
T  98 aaacacattgaaataaaacatcat 121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 24 - 136
Target Start/End: Original strand, 14912717 - 14912829
Alignment:
Q  24 gctgcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacgagtg 123  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||  ||||||| | ||||||||  ||||| || |||||||| ||||    
T  14912717 gctgcaaactgctgctctcaggtactatggattagaaatcaattagaagatttttctctaaggtacgcaaatattcaaatattatgcgataatactagtg 14912816  T
Q  124 caataaatttatc 136  Q
    | |||||||||||    
T  14912817 ctataaatttatc 14912829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 24 - 136
Target Start/End: Original strand, 117469 - 117581
Alignment:
Q  24 gctgcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacgagtg 123  Q
    ||||||||||| |||||||||||| ||||||| |||||||||||||||||||| ||  ||||||| | ||||||||  ||||| || |||||||| ||||    
T  117469 gctgcaaactgctgctctcaggtattatggattagaaatcaattagaagatttttctctaaggtacgcaaatattcaaatattatgcgataatactagtg 117568  T
Q  124 caataaatttatc 136  Q
    | |||||||||||    
T  117569 ctataaatttatc 117581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 21 - 191
Target Start/End: Original strand, 26817595 - 26817762
Alignment:
Q  21 tcagctgcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacga 120  Q
    ||||| || |||||||| ||||| || || ||||| | ||||||| | || |||||||||||||||||   |||||||||  |||||||||| ||||| |    
T  26817595 tcagcagccaactgttgttctcaagttctctggattaaaaatcaacttgaggatttctcaataaggtacacaaatattccagtattttgtgacaatacaa 26817694  T
Q  121 gtgcaataaatttatctnnnnnnnntcccattcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    ||||||||||||||||         ||||||||| ||||||||||| ||||| ||||||||||||||||||    
T  26817695 gtgcaataaatttatc---aaagaatcccattcaacattcaagatcaaaacatattgaaataaaacatcat 26817762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 21 - 191
Target Start/End: Complemental strand, 54694471 - 54694304
Alignment:
Q  21 tcagctgcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacga 120  Q
    ||||| || |||||||| ||||| || || ||||| | ||||||| | || |||||||||||||||||   |||||||||  |||||||||| ||||| |    
T  54694471 tcagcagccaactgttgttctcaagttctctggattaaaaatcaacttgaggatttctcaataaggtacacaaatattccagtattttgtgacaatacaa 54694372  T
Q  121 gtgcaataaatttatctnnnnnnnntcccattcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    ||||||||||||||||         ||||||||| ||||||||||| ||||| ||||||||||||||||||    
T  54694371 gtgcaataaatttatc---aaagaatcccattcaacattcaagatcaaaacatattgaaataaaacatcat 54694304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 24 - 191
Target Start/End: Original strand, 14937622 - 14937786
Alignment:
Q  24 gctgcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacgagtg 123  Q
    |||||||| ||||||||||||||| ||||||| ||||||||| |||||||||||||  | ||||| | |||||||   ||  | ||||||||||| ||||    
T  14937622 gctgcaaattgttgctctcaggtattatggattagaaatcaactagaagatttctctctcaggtacgcaaatattaaaattctatgtgataataccagtg 14937721  T
Q  124 caataaatttatctnnnnnnnntcccattcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    | || ||||||||         ||| ||||||||||||||||| |||||||| ||||| || ||||||    
T  14937722 ctattaatttatc---aaaaaatcctattcagcattcaagatcaaaacacatagaaattaagcatcat 14937786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 131
Target Start/End: Original strand, 14532592 - 14532702
Alignment:
Q  21 tcagctgcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacga 120  Q
    |||||||||| | |||||||||||||| ||| ||||| ||||||  ||||||||| ||   |||||||   ||| ||||||||   |||||||||||| |    
T  14532592 tcagctgcaagcagttgctctcaggtattattgataaaaaatcagctagaagattacttcgtaaggtacacaaaaattcctattcattgtgataatacaa 14532691  T
Q  121 gtgcaataaat 131  Q
    |||| ||||||    
T  14532692 gtgctataaat 14532702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 6698080 - 6698121
Alignment:
Q  150 attcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    ||||||||||| || |||||||| ||||||||||||||||||    
T  6698080 attcagcattctaggtctaaacatattgaaataaaacatcat 6698121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 9e-26; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 25 - 136
Target Start/End: Original strand, 9009332 - 9009443
Alignment:
Q  25 ctgcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacgagtgc 124  Q
    |||||||||| |||||||||||| ||||||| |||||||||||||||||||||||  ||||||| | ||||||||  ||||| || |||||||| |||||    
T  9009332 ctgcaaactgctgctctcaggtattatggattagaaatcaattagaagatttctctctaaggtacgcaaatattcaaatattatgcgataatactagtgc 9009431  T
Q  125 aataaatttatc 136  Q
     |||||||||||    
T  9009432 tataaatttatc 9009443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 24 - 136
Target Start/End: Original strand, 9000166 - 9000278
Alignment:
Q  24 gctgcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacgagtg 123  Q
    ||||||||||| |||||||||||| ||||||| |||||||||||||||||||| ||  ||||||| | ||||||||  ||||| || |||||||| ||||    
T  9000166 gctgcaaactgctgctctcaggtattatggattagaaatcaattagaagatttttctctaaggtacgcaaatattcaaatattatgcgataatactagtg 9000265  T
Q  124 caataaatttatc 136  Q
    | |||||||||||    
T  9000266 ctataaatttatc 9000278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 21 - 191
Target Start/End: Original strand, 18416190 - 18416357
Alignment:
Q  21 tcagctgcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacga 120  Q
    ||||| || |||||||| ||||| || || ||||| | ||||||| | || |||||||||||||||||   |||||||||  |||||||||| ||||| |    
T  18416190 tcagcagccaactgttgttctcaagttctctggattaaaaatcaacttgaggatttctcaataaggtacacaaatattccagtattttgtgacaatacaa 18416289  T
Q  121 gtgcaataaatttatctnnnnnnnntcccattcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    ||||||||||||||||         ||||||||| ||||||||||| ||||| ||||||||||||||||||    
T  18416290 gtgcaataaatttatc---aaagaatcccattcaacattcaagatcaaaacatattgaaataaaacatcat 18416357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 191
Target Start/End: Complemental strand, 27745673 - 27745506
Alignment:
Q  21 tcagctgcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacga 120  Q
    ||||||||||  ||||| ||||| ||| ||||||||||||||||| | || |||||||   |||||||   ||||||||  ||| ||||||||||||| |    
T  27745673 tcagctgcaagttgttgttctcaagtattatggataagaaatcaactcgaggatttctgtctaaggtacacaaatattcaaatactttgtgataatacta 27745574  T
Q  121 gtgcaataaatttatctnnnnnnnntcccattcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    ||||||| ||||||||         ||||||||| |||||| |||| |||||||| ||||| |||||||||    
T  27745573 gtgcaattaatttatc---aaaaaatcccattcaacattcacgatcaaaacacatcgaaattaaacatcat 27745506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 16903808 - 16903849
Alignment:
Q  150 attcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    ||||||||||| || |||||||| ||||||||||||||||||    
T  16903808 attcagcattctaggtctaaacatattgaaataaaacatcat 16903849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 18165081 - 18165122
Alignment:
Q  150 attcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    ||||||||||| || |||||||| ||||||||||||||||||    
T  18165081 attcagcattctaggtctaaacatattgaaataaaacatcat 18165122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 31362682 - 31362723
Alignment:
Q  150 attcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    ||||||||||| || |||||||| ||||||||||||||||||    
T  31362682 attcagcattctaggtctaaacatattgaaataaaacatcat 31362723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1096 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: scaffold1096
Description:

Target: scaffold1096; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 49 - 191
Target Start/End: Complemental strand, 2922 - 2782
Alignment:
Q  49 tatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacgagtgcaataaatttatctnnnnnnnntcc 148  Q
    ||||||||||||||||| | ||||||||||||||||||||   |||||||||  |||||||||||||||| ||||| |||||||||||         |||    
T  2922 tatggataagaaatcaactcgaagatttctcaataaggtacacaaatattccagtattttgtgataatacaagtgctataaatttatc--aaaaaaatcc 2825  T
Q  149 cattcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    |||||| ||||||||||| || || ||||||||||||||||||    
T  2824 cattcaacattcaagatcaaagcatattgaaataaaacatcat 2782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 57; Significance: 5e-24; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 24 - 136
Target Start/End: Original strand, 107974 - 108086
Alignment:
Q  24 gctgcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacgagtg 123  Q
    ||||||||||| |||||||||||| ||||||| |||||||||||||||||||| ||  ||||||| | ||||||||  ||||| || |||||||| ||||    
T  107974 gctgcaaactgctgctctcaggtattatggattagaaatcaattagaagatttttctctaaggtacgcaaatattcaaatattatgcgataatactagtg 108073  T
Q  124 caataaatttatc 136  Q
    | |||||||||||    
T  108074 ctataaatttatc 108086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 21 - 191
Target Start/End: Complemental strand, 98985 - 98818
Alignment:
Q  21 tcagctgcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacga 120  Q
    ||||| || |||||||| ||||| || || ||||| | ||||||| | || |||||||||||||||||   |||||||||  |||||||||| ||||| |    
T  98985 tcagcagccaactgttgttctcaagttctctggattaaaaatcaacttgaggatttctcaataaggtacacaaatattccagtattttgtgacaatacaa 98886  T
Q  121 gtgcaataaatttatctnnnnnnnntcccattcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    ||||||||||||||||         ||||||||| ||||||||||| ||||| ||||||||||||||||||    
T  98885 gtgcaataaatttatc---aaagaatcccattcaacattcaagatcaaaacatattgaaataaaacatcat 98818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 21 - 191
Target Start/End: Original strand, 8036 - 8203
Alignment:
Q  21 tcagctgcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacga 120  Q
    ||||| || |||||||| ||||| || || ||||| | ||||||| | || |||||||||||||||||   |||||||||  |||||||||| ||||| |    
T  8036 tcagcagccaactgttgttctcaagttctctggattaaaaatcaacttgaggatttctcaataaggtacacaaatattccagtattttgtgacaatacaa 8135  T
Q  121 gtgcaataaatttatctnnnnnnnntcccattcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    ||||||||||||||||         ||||||||| ||||||||||| ||||| ||||||||||||||||||    
T  8136 gtgcaataaatttatc---aaagaatcccattcaacattcaagatcaaaacatattgaaataaaacatcat 8203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0764 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0764
Description:

Target: scaffold0764; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 27 - 191
Target Start/End: Complemental strand, 5478 - 5317
Alignment:
Q  27 gcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacgagtgcaa 126  Q
    ||||| ||||||||||| ||  ||||||| ||||||||| | |||||||  ||| |||||||   |||| |||||||  | |||||||| || ||||| |    
T  5478 gcaaattgttgctctcaagtcttatggatcagaaatcaaatggaagattattcactaaggtacacaaatgttcctattatgtgtgataacacaagtgcta 5379  T
Q  127 taaatttatctnnnnnnnntcccattcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    ||||| | |||        ||| ||||||||||| || ||||||||||||||||| |||||||||    
T  5378 taaatctttctaaaaa---tccaattcagcattctaggtctaaacacattgaaattaaacatcat 5317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: scaffold0313
Description:

Target: scaffold0313; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 27 - 191
Target Start/End: Original strand, 1142 - 1303
Alignment:
Q  27 gcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacgagtgcaa 126  Q
    ||||| ||||||||||| ||  ||||||| ||||||||| | |||||||  ||| |||||||   |||| |||||||  | |||||||| || ||||| |    
T  1142 gcaaattgttgctctcaagtcttatggatcagaaatcaaatggaagattattcactaaggtacacaaatgttcctattatgtgtgataacacaagtgcta 1241  T
Q  127 taaatttatctnnnnnnnntcccattcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    ||||| | |||        ||| ||||||||||| || ||||||||||||||||| |||||||||    
T  1242 taaatctttctaaaaa---tccaattcagcattctaggtctaaacacattgaaattaaacatcat 1303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 27 - 191
Target Start/End: Original strand, 15299 - 15460
Alignment:
Q  27 gcaaactgttgctctcaggtactatggataagaaatcaattagaagatttctcaataaggtatgaaaatattcctatattttgtgataatacgagtgcaa 126  Q
    ||||| ||||||||||| ||  ||||||| ||||||||| | |||||||  ||| |||||||   |||| |||||||  | |||||||| || ||||| |    
T  15299 gcaaattgttgctctcaagtcttatggatcagaaatcaaatggaagattattcactaaggtacacaaatgttcctattatgtgtgataacacaagtgcta 15398  T
Q  127 taaatttatctnnnnnnnntcccattcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    ||||| | |||        ||| ||||||||||| || ||||||||||||||||| |||||||||    
T  15399 taaatctttctaaaaa---tccaattcagcattctaggtctaaacacattgaaattaaacatcat 15460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0611 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0611
Description:

Target: scaffold0611; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 3777 - 3818
Alignment:
Q  150 attcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    ||||||||||| || |||||||| ||||||||||||||||||    
T  3777 attcagcattctaggtctaaacatattgaaataaaacatcat 3818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 12456 - 12415
Alignment:
Q  150 attcagcattcaagatctaaacacattgaaataaaacatcat 191  Q
    ||||||||||| || |||||||| ||||||||||||||||||    
T  12456 attcagcattctaggtctaaacatattgaaataaaacatcat 12415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University