View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20926_low_7 (Length: 468)
Name: NF20926_low_7
Description: NF20926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20926_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 127 - 450
Target Start/End: Complemental strand, 38897890 - 38897559
Alignment:
| Q |
127 |
agacaccaacttcttgtataagtttaattcccttttcacatatctacttttaatttttataaatttacttttgaaatgtgaaaatgaaactctcttcaaa |
226 |
Q |
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| T |
38897890 |
agacaccaacttcttgtataagtttaattcccttttcacatatctacttttaatttttataaatttacttttgaaatgtgaaaatgaaactctcttcaaa |
38897791 |
T |
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| Q |
227 |
ataaaagctgatcaaggtgaaaaataattatttcgaaagaattaatttggtaaa--------caaagtggtaaagttgatttttaaaagtggatggaacg |
318 |
Q |
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| T |
38897790 |
ataaaagctgatcaaggtgaaaaataattatttcgaaagaattaatttggtaaaattgtttccaaagtggtaaagttgatttttaaaagtgaattgaatg |
38897691 |
T |
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| Q |
319 |
taaaataattaatgtttaaatccatttcatgtaaacattgttcgaacaataaagtcaatgttaaaaattaattgaagaagtaaaaactccaaattttaac |
418 |
Q |
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| T |
38897690 |
taaaataattaatgtttaaatccatttcatgtaaacattgttcgaacaataaagtcaatgttaaaaattaattgaagaagtaaaaactccaaattttaac |
38897591 |
T |
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| Q |
419 |
ttcgaattaagatcaaaagcaaagtctattct |
450 |
Q |
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| T |
38897590 |
ttcgaattaagataaaaaacaaagtctattct |
38897559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 41
Target Start/End: Complemental strand, 38898006 - 38897976
Alignment:
| Q |
11 |
cacagacaaatacacacgttggatgatgatc |
41 |
Q |
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| T |
38898006 |
cacagacaaatacacacgttggatgatgatc |
38897976 |
T |
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