View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20927_high_1 (Length: 617)
Name: NF20927_high_1
Description: NF20927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20927_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 541; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 18 - 613
Target Start/End: Complemental strand, 30107812 - 30107216
Alignment:
| Q |
18 |
gatatatgtgtgcgtatatgaacctacaagaggcctggatagtacctatgtgtacacttcaaccaaaatcatgacaagtacaaaccacaaccaatagaca |
117 |
Q |
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|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30107812 |
gatatatgtgtgcgtatatgaacctataagaggcctgcatagtacctatgtgtacacttcaaccaaaatcatgacaagtacaaaccacaaccaatagaca |
30107713 |
T |
|
| Q |
118 |
tctatactcttcaattcaatgtgtctagtgtctaacatgtgtacatggtcacatgtgattacatttaatcactttcaactttttaaattattatcagtat |
217 |
Q |
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||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30107712 |
tctatactcttcaattcaatgtggctggtgtctaacatgtgtacatggtcacatgtgattacatttaatcactttcaactttttaaattattatcagtat |
30107613 |
T |
|
| Q |
218 |
cttcgtgtca-gtgttgtgtctggtgtccggacaggtccgcgcctgtgcttcatagatagaactaacctggatttagagtagagtccttccattgaagga |
316 |
Q |
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|| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30107612 |
ctacgtgtcaagtgttgtgtctggtgtccggacaggtccgcgcctgtgcttcatagatagaactaacctggatttagagtagagtccttccattgaagga |
30107513 |
T |
|
| Q |
317 |
gtagcagatgtcacagtaaccaaatgcaaatcccaatccttctccacacccggaaacaacctcaaaaacttcgaataagcctccgacgtttcagccacac |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30107512 |
gtagcagatgtcacagtaaccaaatgcaaatcccaatccttctccacacccggaaacaacctcaaaaacttcgaataagcctccgacgtttcagccacac |
30107413 |
T |
|
| Q |
417 |
ccatcaaccaaaccttctcgccataaacctccaacaatctccccaactccgacacaacaaacttaacacctcccccatccacatcatccccaaccaaaac |
516 |
Q |
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| T |
30107412 |
ccatcaaccaaaccttctcaccataaacctccaacaatctccccaactccgacacaacaaacttaatacatccaccatccacatcatccccaaccaaaac |
30107313 |
T |
|
| Q |
517 |
ctcaatctctccaaacccaacaacaacaccagcacccaaacatttcttcacctcacaccccacttccttaaacctcaaacccatcttcatctcactc |
613 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
30107312 |
ctcaatctctccaaacccaacaacaacaccagcacccaaacatttctccacctcacaccccacttccttaaacctcaaacccatcttctcctcactc |
30107216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 282 - 387
Target Start/End: Complemental strand, 25773977 - 25773872
Alignment:
| Q |
282 |
acctggatttagagtagagtccttccattgaaggagtagcagatgtcacagtaaccaaatgcaaatcccaatccttctccacacccggaaacaacctcaa |
381 |
Q |
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|||||||||||||||| ||||||||||| |||||||||||||||||||||| | | |||||||||| |||| || || ||| |||||||||||||| |
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| T |
25773977 |
acctggatttagagtatagtccttccatagaaggagtagcagatgtcacaggcaaaacatgcaaatccaaatctttttcaacattaggaaacaacctcaa |
25773878 |
T |
|
| Q |
382 |
aaactt |
387 |
Q |
| |
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|||||| |
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|
| T |
25773877 |
aaactt |
25773872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 245
Target Start/End: Complemental strand, 20691335 - 20691292
Alignment:
| Q |
202 |
aaattattatcagtatcttcgtgtcagtgttgtgtctggtgtcc |
245 |
Q |
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| T |
20691335 |
aaattattatcagtttctacgtgtcagtgttgtgtccggtgtcc |
20691292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 27531849 - 27531893
Alignment:
| Q |
167 |
cacatgtgattacatttaatcactttcaactttttaaattattat |
211 |
Q |
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||||| |||||||||||||||||||||| |||| |||||||||| |
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| T |
27531849 |
cacatttgattacatttaatcactttcattttttcaaattattat |
27531893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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