View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20927_high_3 (Length: 490)
Name: NF20927_high_3
Description: NF20927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20927_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 425; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 1 - 474
Target Start/End: Complemental strand, 6270673 - 6270200
Alignment:
| Q |
1 |
cctcaacccacccaannnnnnnaactccaatcttcatcccaccaaaaacccgctccatcctccggttcgactcctcaatccggtcaaaccgctccgtcat |
100 |
Q |
| |
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||||||||||||||| ||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6270673 |
cctcaacccacccaacaccaccaacgccaatcttcatccctccaaaaaaccgctccatcctccggttcgactcctcaatccggtcaaaccgctccgtcat |
6270574 |
T |
|
| Q |
101 |
ctcggctcttacatggtttatatcagcaagtatatgagcttgcatcggaacctgcaagaatatttaagttactgaatgtcaaaatacttattatgctgaa |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6270573 |
ctcggctcttacatggttgatatcagcaagtatataagcttgcatcggaacctgcaagaatatttaagttactgaatgtcaaaatacttattatgctgaa |
6270474 |
T |
|
| Q |
201 |
tctcaaacaatggatatttaagttaccgaatctcaaaattactgtttaatttataagaaatgagtttgaaataactttttgaataataaaaaccattttt |
300 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6270473 |
tctcaaacaatgaatatttaagttaccgaatctcaaaattactgtttaatttataagaaatgagtttgaaataactttttgaataataaaaaccattttt |
6270374 |
T |
|
| Q |
301 |
agaaaataacaaacggattttgaacctgcaagatttgtgtgacagtctcttcaagattctccatcttcttcgcaagctgaaagttacgataaacgttcca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6270373 |
agaaaataacaaacggattttgaacctgcaagatttgtgtgacagtctcttcaagattctccatcttcttcgcaagctgaaagttacgataaacgttcca |
6270274 |
T |
|
| Q |
401 |
gcgactagtggcgaggacttgatgagaaagctcaacgccggagcggagaatctcagagagacgatcaagatgag |
474 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
6270273 |
gcgactagtggcgaggacttgatgagaaagctcaacgccggagcggagaatctcggagagacgatcaagatgag |
6270200 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 279
Target Start/End: Original strand, 43413539 - 43413620
Alignment:
| Q |
199 |
aatctcaaacaatggatatttaagttaccgaatctcaaaat-tactgtttaatttataagaaatgagtttgaaataactttt |
279 |
Q |
| |
|
|||||||||||||| |||||||||||| |||| ||||||| | | ||||| ||||| |||||||||||||||| ||||| |
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|
| T |
43413539 |
aatctcaaacaatgaatatttaagttagtgaatatcaaaatctcttttttaacttatatcaaatgagtttgaaatacctttt |
43413620 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 199 - 266
Target Start/End: Original strand, 30389694 - 30389762
Alignment:
| Q |
199 |
aatctcaaacaatggatatttaagttaccgaatctcaaaattact-gtttaatttataagaaatgagtt |
266 |
Q |
| |
|
|||||| ||||||| |||| |||||| | |||| ||||||||||| |||||||||||| ||||||||| |
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|
| T |
30389694 |
aatctctaacaatgaatatctaagttgctgaatgtcaaaattactcttttaatttataacaaatgagtt |
30389762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 277
Target Start/End: Complemental strand, 43094596 - 43094518
Alignment:
| Q |
200 |
atctcaaacaatggatatttaagttaccgaatctcaaaat-tactgtttaatttataagaaatgagtttgaaataactt |
277 |
Q |
| |
|
||||| ||||||| |||||||||||| |||| ||||||| || | ||||| |||||| |||||||||||||||||||| |
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|
| T |
43094596 |
atctcgaacaatgaatatttaagttagtgaatatcaaaatctattttttaacttataacaaatgagtttgaaataactt |
43094518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 199 - 279
Target Start/End: Complemental strand, 9157646 - 9157565
Alignment:
| Q |
199 |
aatctcaaacaatggatatttaagttaccgaatctcaaaat-tactgtttaatttataagaaatgagtttgaaataactttt |
279 |
Q |
| |
|
|||||||||||||| |||||||||||| |||| ||||||| | | ||||| ||||| |||||||||||||||||||||| |
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|
| T |
9157646 |
aatctcaaacaatgaatatttaagttagtgaatgtcaaaatctcttttttaacttatatcaaatgagtttgaaataactttt |
9157565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 280
Target Start/End: Original strand, 16476512 - 16476547
Alignment:
| Q |
245 |
tttaatttataagaaatgagtttgaaataacttttt |
280 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |
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|
| T |
16476512 |
tttaatttataataaatgagtttgaaataacttttt |
16476547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 274
Target Start/End: Original strand, 47117739 - 47117814
Alignment:
| Q |
200 |
atctcaaacaatggatatttaagttaccgaatctcaaaatt-actgtttaatttataagaaatgagtttgaaataa |
274 |
Q |
| |
|
|||||| |||||| |||||||||||| |||| |||||||| | | ||||||||||| ||||||||||||||||| |
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|
| T |
47117739 |
atctcagacaatgaatatttaagttaatgaatgtcaaaatttattttttaatttatactaaatgagtttgaaataa |
47117814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 277
Target Start/End: Complemental strand, 21646965 - 21646886
Alignment:
| Q |
199 |
aatctcaaacaatggatatttaagttaccgaatctcaaaattactgttt-aatttataagaaatgagtttgaaataactt |
277 |
Q |
| |
|
|||||| ||||||| ||||||| |||| |||| ||||||| || ||| ||||||||| |||||||||||||||||||| |
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|
| T |
21646965 |
aatctcgaacaatgaatatttaggttagtgaatgtcaaaatatcttttttaatttataacaaatgagtttgaaataactt |
21646886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 277
Target Start/End: Original strand, 41670286 - 41670361
Alignment:
| Q |
203 |
tcaaacaatggatatttaagttaccgaatctcaaaat-tactgtttaatttataagaaatgagtttgaaataactt |
277 |
Q |
| |
|
|||||||||| |||||||||||| |||| ||||||| || | ||||| ||||| |||||||||||||||||||| |
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|
| T |
41670286 |
tcaaacaatgaatatttaagttaatgaatgtcaaaatctattttttaacttatatcaaatgagtttgaaataactt |
41670361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 279
Target Start/End: Original strand, 33891838 - 33891919
Alignment:
| Q |
199 |
aatctcaaacaatggatatttaagttaccgaatctcaaaattactgttt-aatttataagaaatgagtttgaaataactttt |
279 |
Q |
| |
|
|||||| ||||||| |||||||||||| |||| ||||||| || ||| || ||||| |||||||||||||||||||||| |
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|
| T |
33891838 |
aatctcgaacaatgaatatttaagttagtgaatgtcaaaatctcttttttaacttatatcaaatgagtttgaaataactttt |
33891919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 199 - 279
Target Start/End: Original strand, 36977613 - 36977693
Alignment:
| Q |
199 |
aatctcaaacaatggatatttaagttaccgaatctcaaaattactgtttaatttataagaaatgagtttgaaataactttt |
279 |
Q |
| |
|
|||||| ||||||| |||||||||||| |||| ||||||| || ||| | |||| |||||||||||||||||||||| |
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|
| T |
36977613 |
aatctcgaacaatgaatatttaagttagtgaatgtcaaaatctcttttttaactatattaaatgagtttgaaataactttt |
36977693 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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