View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20927_high_4 (Length: 390)

Name: NF20927_high_4
Description: NF20927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20927_high_4
NF20927_high_4
[»] chr4 (7 HSPs)
chr4 (123-374)||(17970409-17970659)
chr4 (335-374)||(27563337-27563376)
chr4 (335-374)||(27412774-27412813)
chr4 (335-374)||(27504032-27504071)
chr4 (335-374)||(27600663-27600702)
chr4 (335-368)||(27415737-27415770)
chr4 (337-374)||(27444787-27444824)
[»] chr2 (1 HSPs)
chr2 (123-374)||(3073679-3073929)
[»] chr3 (12 HSPs)
chr3 (206-374)||(38044013-38044183)
chr3 (208-374)||(50904652-50904822)
chr3 (335-374)||(48840703-48840742)
chr3 (335-374)||(50910070-50910109)
chr3 (335-374)||(55084896-55084935)
chr3 (296-374)||(38028718-38028796)
chr3 (296-374)||(38040033-38040111)
chr3 (296-374)||(38036745-38036823)
chr3 (157-270)||(48838531-48838639)
chr3 (337-371)||(38024868-38024902)
chr3 (337-371)||(38031320-38031354)
chr3 (338-371)||(50911863-50911896)
[»] chr5 (3 HSPs)
chr5 (144-220)||(33492927-33493003)
chr5 (235-302)||(33492864-33492931)
chr5 (335-374)||(1754798-1754837)
[»] chr8 (1 HSPs)
chr8 (296-374)||(21604706-21604784)


Alignment Details
Target: chr4 (Bit Score: 180; Significance: 4e-97; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 123 - 374
Target Start/End: Complemental strand, 17970659 - 17970409
Alignment:
Q  123 aaatatgaaaatagagtggactaatgtcactgattatgtat--gccattcatataatcaattttcacccatattcctaatcaaggaagggaaaaggaaaa 220  Q
    |||||||||||||||||||||||| ||||| ||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17970659 aaatatgaaaatagagtggactaaagtcaccgattatgtatatgtcattcatataatcaattttcacccatattcctaatcaaggaagggaaaaggaaaa 17970560  T
Q  221 atatttacaagtgcgaaaaatgcctattattataaatgtcactactaatcaatgtaagtctcttgcagctgcaggtttatagaccattgaagttagaagt 320  Q
    |||||||||||||||||||||||||||| |||||||||||||||| |   ||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  17970559 atatttacaagtgcgaaaaatgcctattgttataaatgtcactacca---aatgtaagtctctcgcagctgcaggtttatagaccattgaagctagaagt 17970463  T
Q  321 aacatgcnnnnnnncatcttctgtgcaaggaattgtgaggccacccattggatg 374  Q
    |||||||       ||||||||||||||||||||||||||||||||||||||||    
T  17970462 aacatgcaaaaaaacatcttctgtgcaaggaattgtgaggccacccattggatg 17970409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 335 - 374
Target Start/End: Original strand, 27563337 - 27563376
Alignment:
Q  335 catcttctgtgcaaggaattgtgaggccacccattggatg 374  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  27563337 catcttcagtgcaaggaattgtgaggccacccattggatg 27563376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 335 - 374
Target Start/End: Complemental strand, 27412813 - 27412774
Alignment:
Q  335 catcttctgtgcaaggaattgtgaggccacccattggatg 374  Q
    ||||||| ||||||||||| ||||||||||||||||||||    
T  27412813 catcttccgtgcaaggaatggtgaggccacccattggatg 27412774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 335 - 374
Target Start/End: Complemental strand, 27504071 - 27504032
Alignment:
Q  335 catcttctgtgcaaggaattgtgaggccacccattggatg 374  Q
    ||||||| ||||||||||| ||||||||||||||||||||    
T  27504071 catcttcggtgcaaggaatggtgaggccacccattggatg 27504032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 335 - 374
Target Start/End: Complemental strand, 27600702 - 27600663
Alignment:
Q  335 catcttctgtgcaaggaattgtgaggccacccattggatg 374  Q
    |||||||| |||||||||||||||| ||||||||||||||    
T  27600702 catcttctttgcaaggaattgtgagaccacccattggatg 27600663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 368
Target Start/End: Complemental strand, 27415770 - 27415737
Alignment:
Q  335 catcttctgtgcaaggaattgtgaggccacccat 368  Q
    ||||||||||||||||||| ||||||||||||||    
T  27415770 catcttctgtgcaaggaatggtgaggccacccat 27415737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 374
Target Start/End: Original strand, 27444787 - 27444824
Alignment:
Q  337 tcttctgtgcaaggaattgtgaggccacccattggatg 374  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  27444787 tcttctctgcaaggaattgtgagaccacccattggatg 27444824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 123 - 374
Target Start/End: Complemental strand, 3073929 - 3073679
Alignment:
Q  123 aaatatgaaaatagagtggactaatgtcactgattatgtat--gccattcatataatcaattttcacccatattcctaatcaaggaagggaaaaggaaaa 220  Q
    |||||||||||||||||||||||| ||||| ||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3073929 aaatatgaaaatagagtggactaaagtcaccgattatgtatatgtcattcatataatcaattttcacccatattcctaatcaaggaagggaaaaggaaaa 3073830  T
Q  221 atatttacaagtgcgaaaaatgcctattattataaatgtcactactaatcaatgtaagtctcttgcagctgcaggtttatagaccattgaagttagaagt 320  Q
    |||||||||||||||||||||||||||| |||||||||||||||| |   ||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  3073829 atatttacaagtgcgaaaaatgcctattgttataaatgtcactacca---aatgtaagtctctcgcagctgcaggtttatagaccattgaagctagaagt 3073733  T
Q  321 aacatgcnnnnnnncatcttctgtgcaaggaattgtgaggccacccattggatg 374  Q
    |||||||       ||||||||||||||||||||||||||||||||||||||||    
T  3073732 aacatgcaaaaaaacatcttctgtgcaaggaattgtgaggccacccattggatg 3073679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 206 - 374
Target Start/End: Complemental strand, 38044183 - 38044013
Alignment:
Q  206 aagggaaaaggaaaaatatttacaagtgcgaaaaa--tgcctattattataaatgtcactactaatcaatgtaagtctcttgcagctgcaggtttataga 303  Q
    ||||||||||||||||||||||||||||  |||||  |||||||| ||  ||||||||| ||||||| |||| ||||| |||||||||||| | ||||      
T  38044183 aagggaaaaggaaaaatatttacaagtgtaaaaaaaatgcctattgttcaaaatgtcacgactaatctatgtcagtcttttgcagctgcagctctatatc 38044084  T
Q  304 ccattgaagttagaagtaacatgcnnnnnnncatcttctgtgcaaggaattgtgaggccacccattggatg 374  Q
    |||||||||  |||||||||| ||       || |||| |||||||||||||||||||| |||||||||||    
T  38044083 ccattgaagcgagaagtaacacgcaagaaaacaccttcggtgcaaggaattgtgaggccgcccattggatg 38044013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 208 - 374
Target Start/End: Original strand, 50904652 - 50904822
Alignment:
Q  208 gggaaaaggaaaaatatttacaagtgcgaaaaat----gcctattattataaatgtcactactaatcaatgtaagtctcttgcagctgcaggtttataga 303  Q
    ||||||||||||||||||||||||||  |||||     ||||||| ||  ||||||||||||||||| |||| | |||||||||||||||| |||| ||     
T  50904652 gggaaaaggaaaaatatttacaagtgtaaaaaaaaaacgcctattgttcaaaatgtcactactaatctatgtcactctcttgcagctgcagatttacagc 50904751  T
Q  304 ccattgaagttagaagtaacatgcnnnnnnncatcttctgtgcaaggaattgtgaggccacccattggatg 374  Q
    |||||||||  |||||| | ||||       | |||||| |||||||||| ||||||||||||||||||||    
T  50904752 ccattgaagcgagaagtgatatgcaaaaaaacctcttctctgcaaggaatggtgaggccacccattggatg 50904822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 335 - 374
Target Start/End: Original strand, 48840703 - 48840742
Alignment:
Q  335 catcttctgtgcaaggaattgtgaggccacccattggatg 374  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  48840703 catcttctgtgcaaggaattgtgaggccacccattggatg 48840742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 335 - 374
Target Start/End: Complemental strand, 50910109 - 50910070
Alignment:
Q  335 catcttctgtgcaaggaattgtgaggccacccattggatg 374  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  50910109 catcttctgtgcaaggaattgtgaggccacccattggatg 50910070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 335 - 374
Target Start/End: Complemental strand, 55084935 - 55084896
Alignment:
Q  335 catcttctgtgcaaggaattgtgaggccacccattggatg 374  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  55084935 catcttctgtgcaaggaattgtgaggccacccattggatg 55084896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 374
Target Start/End: Original strand, 38028718 - 38028796
Alignment:
Q  296 tttatagaccattgaagttagaagtaacatgcnnnnnnncatcttctgtgcaaggaattgtgaggccacccattggatg 374  Q
    ||||||| |||||||||| |||||||| ||||       | |||||||||||||||||||||||||| |||||||||||    
T  38028718 tttatagcccattgaagtgagaagtaatatgcaagaaaacgtcttctgtgcaaggaattgtgaggccgcccattggatg 38028796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 374
Target Start/End: Original strand, 38040033 - 38040111
Alignment:
Q  296 tttatagaccattgaagttagaagtaacatgcnnnnnnncatcttctgtgcaaggaattgtgaggccacccattggatg 374  Q
    ||||||| |||||||||| |||||||| ||||       | |||||||||||||||||||||||||| |||||||||||    
T  38040033 tttatagcccattgaagtgagaagtaatatgcaagaaaacgtcttctgtgcaaggaattgtgaggccgcccattggatg 38040111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 296 - 374
Target Start/End: Original strand, 38036745 - 38036823
Alignment:
Q  296 tttatagaccattgaagttagaagtaacatgcnnnnnnncatcttctgtgcaaggaattgtgaggccacccattggatg 374  Q
    ||||||| |||||||||| |||||||| ||||       | | |||||||||||||||||||||||| |||||||||||    
T  38036745 tttatagcccattgaagtgagaagtaatatgcaagaaaacgtattctgtgcaaggaattgtgaggccgcccattggatg 38036823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 270
Target Start/End: Original strand, 48838531 - 48838639
Alignment:
Q  157 tatgtatgccattcatataatcaattttcacccatattcctaatcaaggaagggaaaaggaaaaatatttacaagtgcgaaaaatgcctattattataaa 256  Q
    |||||||| ||||||||||  |||||||| ||||| |||| ||| ||||    ||| | ||||||||||||| ||||  |||||||| |||||||  |||    
T  48838531 tatgtatgtcattcatatagacaattttcgcccattttcccaataaagg----gaataagaaaaatatttactagtgt-aaaaatgcttattattcaaaa 48838625  T
Q  257 tgtcactactaatc 270  Q
    ||||||||||||||    
T  48838626 tgtcactactaatc 48838639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 337 - 371
Target Start/End: Original strand, 38024868 - 38024902
Alignment:
Q  337 tcttctgtgcaaggaattgtgaggccacccattgg 371  Q
    ||||||||||||||||| |||||||||||||||||    
T  38024868 tcttctgtgcaaggaatcgtgaggccacccattgg 38024902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 337 - 371
Target Start/End: Original strand, 38031320 - 38031354
Alignment:
Q  337 tcttctgtgcaaggaattgtgaggccacccattgg 371  Q
    ||||||||||||||||| |||||||||||||||||    
T  38031320 tcttctgtgcaaggaatcgtgaggccacccattgg 38031354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 338 - 371
Target Start/End: Original strand, 50911863 - 50911896
Alignment:
Q  338 cttctgtgcaaggaattgtgaggccacccattgg 371  Q
    ||||||||||||||||||| ||||||||||||||    
T  50911863 cttctgtgcaaggaattgttaggccacccattgg 50911896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 144 - 220
Target Start/End: Complemental strand, 33493003 - 33492927
Alignment:
Q  144 taatgtcactgattatgtatgccattcatataatcaattttcacccatattcctaatcaaggaagggaaaaggaaaa 220  Q
    |||||| | |||||||||||| |||||||||| |||||||||||||||||||| ||| |||||| | ||||||||||    
T  33493003 taatgttagtgattatgtatgtcattcatatagtcaattttcacccatattcccaataaaggaatgaaaaaggaaaa 33492927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 302
Target Start/End: Complemental strand, 33492931 - 33492864
Alignment:
Q  235 gaaaaatgcctattattataaatgtcactactaatcaatgtaagtctcttgcagctgcaggtttatag 302  Q
    ||||| || ||||| || |||| ||||||||||||| ||| |||||||||||||||||||||||||||    
T  33492931 gaaaattgtctattgttctaaacgtcactactaatctatgcaagtctcttgcagctgcaggtttatag 33492864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 335 - 374
Target Start/End: Complemental strand, 1754837 - 1754798
Alignment:
Q  335 catcttctgtgcaaggaattgtgaggccacccattggatg 374  Q
    |||||||||||||| |||| ||||||||||||||||||||    
T  1754837 catcttctgtgcaaagaatggtgaggccacccattggatg 1754798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 374
Target Start/End: Original strand, 21604706 - 21604784
Alignment:
Q  296 tttatagaccattgaagttagaagtaacatgcnnnnnnncatcttctgtgcaaggaattgtgaggccacccattggatg 374  Q
    ||||||| |||||||||| |||||||| ||||       | |||||||||||||||||||||||||| |||||||||||    
T  21604706 tttatagcccattgaagtgagaagtaatatgcaagaaaacgtcttctgtgcaaggaattgtgaggccgcccattggatg 21604784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University