View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20927_high_7 (Length: 223)
Name: NF20927_high_7
Description: NF20927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20927_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 21 - 195
Target Start/End: Complemental strand, 27692380 - 27692208
Alignment:
| Q |
21 |
ttgctaaatggatttatgatcaatttgaggaaacaatagataccaacaatgacacagaagaggaaaataatattgctatgaagatgattgtgatagcatt |
120 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||||||| ||||||| ||||| |||||||| || ||||| ||||||||||||||||| || || |
|
|
| T |
27692380 |
ttgctagatgggtttatgatcaatttgaggaaacaatagatacaaacaatggtacagaggaggaaaagaaaattgcaatgaagatgattgtgattgcgtt |
27692281 |
T |
|
| Q |
121 |
aaaaaatgcatagaaatgaaaccagatgatcgtccctcaatgaatgaagtgatagatatgcttgaaggagatgaa |
195 |
Q |
| |
|
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27692280 |
gaaa--tgcatacaaatgaaaccagatgatcgtccctcaatgaatgaagtgatagatatgcttgaaggagatgaa |
27692208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 9255301 - 9255356
Alignment:
| Q |
137 |
tgaaaccagatgatcgtccctcaatgaatgaagtgatagatatgcttgaaggagat |
192 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
9255301 |
tgaaaccatgtgatcgtccctcaatgaataaagtgatagagatgcttgaaggagat |
9255356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 9318563 - 9318615
Alignment:
| Q |
137 |
tgaaaccagatgatcgtccctcaatgaatgaagtgatagatatgcttgaagga |
189 |
Q |
| |
|
|||||||| ||||||||| |||||||| |||||||||| |||||||||||| |
|
|
| T |
9318563 |
tgaaaccatgtgatcgtccttcaatgaacaaagtgatagagatgcttgaagga |
9318615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 9319739 - 9319687
Alignment:
| Q |
137 |
tgaaaccagatgatcgtccctcaatgaatgaagtgatagatatgcttgaagga |
189 |
Q |
| |
|
|||||||| ||||||||| |||||||| |||||||||| |||||||||||| |
|
|
| T |
9319739 |
tgaaaccatgtgatcgtccttcaatgaacaaagtgatagagatgcttgaagga |
9319687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 9350056 - 9350004
Alignment:
| Q |
137 |
tgaaaccagatgatcgtccctcaatgaatgaagtgatagatatgcttgaagga |
189 |
Q |
| |
|
|||||||| ||||||||| |||||||| |||||||||| |||||||||||| |
|
|
| T |
9350056 |
tgaaaccatgtgatcgtccttcaatgaacaaagtgatagagatgcttgaagga |
9350004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University