View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20927_low_2 (Length: 529)

Name: NF20927_low_2
Description: NF20927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20927_low_2
NF20927_low_2
[»] chr8 (1 HSPs)
chr8 (160-516)||(19963559-19963906)
[»] chr4 (4 HSPs)
chr4 (343-452)||(1661433-1661542)
chr4 (320-452)||(19910222-19910357)
chr4 (163-308)||(19910342-19910487)
chr4 (326-399)||(55877785-55877858)
[»] chr3 (2 HSPs)
chr3 (322-452)||(25490145-25490274)
chr3 (326-398)||(46594474-46594546)
[»] scaffold0405 (1 HSPs)
scaffold0405 (326-398)||(13354-13426)
[»] chr6 (1 HSPs)
chr6 (326-398)||(4436292-4436364)
[»] chr5 (1 HSPs)
chr5 (326-398)||(37718796-37718868)
[»] chr1 (1 HSPs)
chr1 (326-398)||(26496510-26496582)


Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 160 - 516
Target Start/End: Original strand, 19963559 - 19963906
Alignment:
Q  160 cagcatacaaattctgacatgtgataaaatgtatgaagtacggttcaaacctgttgtgaaggcagccattagagagatttcaaaacaggagaaatgggaa 259  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  19963559 cagcatacaacttctgacatgtgacaaaatgtatgaagtacggttcaaacctgttgtgaaggcagccattagagatatttcaaaacaggagaaataggaa 19963658  T
Q  260 tgtgatgcttttggcagtgtccaatttagtatcatttacagtcattcacnnnnnnnnagttctacaagtcattcactttgatgaatgctactttgcatat 359  Q
    |||||||| |||||||||| |||||||||||||||||| ||||||||||        ||| ||||||||||||||||| ||||||||||||||||||| |    
T  19963659 tgtgatgc-tttggcagtgcccaatttagtatcatttatagtcattcac-ttttgttagtactacaagtcattcacttcgatgaatgctactttgcattt 19963756  T
Q  360 taactgtttgataaaaggatcattagaacttagttgaggtcttctctttgcatttcttaattcaagatatggaatagataatagctctcattaatcatta 459  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||       ||||||    
T  19963757 taactgtttgacaaaaggatcattagaacttagtcgaggtcttctctttgcatttcttaaatcaagatatggaatagataatagctc-------tcatta 19963849  T
Q  460 tgcctgaaatttaaaacttannnnnnnnnctccatcaatttttgaatttaacaatga 516  Q
    ||||||||||||||||||||         ||||  ||||||||||||||||||||||    
T  19963850 tgcctgaaatttaaaacttattgttttttctcctccaatttttgaatttaacaatga 19963906  T

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Target: chr4 (Bit Score: 78; Significance: 4e-36; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 343 - 452
Target Start/End: Complemental strand, 1661542 - 1661433
Alignment:
Q  343 aatgctactttgcatattaactgtttgataaaaggatcattagaacttagttgaggtcttctctttgcatttcttaattcaagatatggaatagataata 442  Q
    |||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||| |||||| |||||||||||||||    
T  1661542 aatgctactttgcattctaactgtttgataaaaggatcattaaaacttagttgaggtcttctcagtgcatttcttaaatcaagacatggaatagataata 1661443  T
Q  443 gctctcatta 452  Q
    |||| |||||    
T  1661442 gctcccatta 1661433  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 320 - 452
Target Start/End: Complemental strand, 19910357 - 19910222
Alignment:
Q  320 tctacaagtcattcactttgatgaatgctacttt--gcatat-taactgtttgataaaaggatcattagaacttagttgaggtcttctctttgcatttct 416  Q
    |||||||||||||||||||||||||||||| |||  |||| | ||| ||| ||||||||||||||  ||||||||||||||||||||||| |||||||||    
T  19910357 tctacaagtcattcactttgatgaatgctattttttgcatttataattgtatgataaaaggatcacgagaacttagttgaggtcttctctatgcatttct 19910258  T
Q  417 taattcaagatatggaatagataatagctctcatta 452  Q
    ||| |||||| |||||||||||||||| ||||||||    
T  19910257 taaatcaagacatggaatagataataggtctcatta 19910222  T

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Target: chr4; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 163 - 308
Target Start/End: Complemental strand, 19910487 - 19910342
Alignment:
Q  163 catacaaattctgacatgtgataaaatgtatgaagtacggttcaaacctgttgtgaaggcagccattagagagatttcaaaacaggagaaatgggaatgt 262  Q
    ||||||||| || |||  ||| ||| |||||||||||| |  |||||||||   |||| |||||||||||||||||||||||| |||||||||| ||||     
T  19910487 catacaaatcctaacaaatgacaaagtgtatgaagtacaggccaaacctgtgtggaagacagccattagagagatttcaaaacgggagaaatggaaatgc 19910388  T
Q  263 gatgcttttggcagtgtccaatttagtatcatttac-agtcattcac 308  Q
     ||| ||||||||||||||||||||||||||| ||| ||||||||||    
T  19910387 aatg-ttttggcagtgtccaatttagtatcatctacaagtcattcac 19910342  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 399
Target Start/End: Original strand, 55877785 - 55877858
Alignment:
Q  326 agtcattcactttgatgaatgctactttgcatattaactgtttgataaaaggatcattagaacttagttgaggt 399  Q
    |||||||| ||||||| || ||||||||||||  ||| ||| |||||||||||||  | ||| |||||||||||    
T  55877785 agtcattctctttgatcaaagctactttgcattctaagtgtatgataaaaggatcgcttgaatttagttgaggt 55877858  T

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Target: chr3 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 322 - 452
Target Start/End: Original strand, 25490145 - 25490274
Alignment:
Q  322 tacaagtcattcactttgatgaatgctactttgcatattaactgtttgataaaaggatcattagaacttagttgaggtcttctctttgcatttcttaatt 421  Q
    ||||||||||||||||||||||| ||||||||||||  |||| ||||||||||||||||| ||||||| |||||||||||||||| |||| || |||| |    
T  25490145 tacaagtcattcactttgatgaaagctactttgcattataaccgtttgataaaaggatcactagaactaagttgaggtcttctctatgcaatt-ttaaat 25490243  T
Q  422 caagatatggaatagataatagctctcatta 452  Q
    ||||| ||| ||||| |||| ||||||||||    
T  25490244 caagacatgaaataggtaatggctctcatta 25490274  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 398
Target Start/End: Complemental strand, 46594546 - 46594474
Alignment:
Q  326 agtcattcactttgatgaatgctactttgcatattaactgtttgataaaaggatcattagaacttagttgagg 398  Q
    ||||||||| |||||||||  |||||||||||  ||| |||| ||||||| |||||  |||||||| ||||||    
T  46594546 agtcattcagtttgatgaaatctactttgcattataattgttcgataaaaagatcacaagaacttacttgagg 46594474  T

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Target: scaffold0405 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0405
Description:

Target: scaffold0405; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 398
Target Start/End: Complemental strand, 13426 - 13354
Alignment:
Q  326 agtcattcactttgatgaatgctactttgcatattaactgtttgataaaaggatcattagaacttagttgagg 398  Q
    |||| ||||||||||||| |||||||||||    |||||||||||||||| ||||  |||||||| |||||||    
T  13426 agtcgttcactttgatgagtgctactttgccgtctaactgtttgataaaatgatctctagaacttggttgagg 13354  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 398
Target Start/End: Original strand, 4436292 - 4436364
Alignment:
Q  326 agtcattcactttgatgaatgctactttgcatattaactgtttgataaaaggatcattagaacttagttgagg 398  Q
    ||||||||| |||||||||  |||||||||||  ||| |||| ||||||| |||||  |||||||| ||||||    
T  4436292 agtcattcagtttgatgaaatctactttgcattataattgttcgataaaaagatcacaagaacttacttgagg 4436364  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 398
Target Start/End: Complemental strand, 37718868 - 37718796
Alignment:
Q  326 agtcattcactttgatgaatgctactttgcatattaactgtttgataaaaggatcattagaacttagttgagg 398  Q
    ||||||||| |||||||||  |||||||||||  ||| |||| ||||||| |||||  |||||||| ||||||    
T  37718868 agtcattcagtttgatgaaatctactttgcattataattgttcgataaaaagatcacaagaacttacttgagg 37718796  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 398
Target Start/End: Original strand, 26496510 - 26496582
Alignment:
Q  326 agtcattcactttgatgaatgctactttgcatattaactgtttgataaaaggatcattagaacttagttgagg 398  Q
    ||||||||| |||||||||  ||||||||||| |||| ||||  |||||| |||||  |||||||| ||||||    
T  26496510 agtcattcagtttgatgaaatctactttgcattttaattgttctataaaaagatcacaagaacttacttgagg 26496582  T

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