View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20927_low_4 (Length: 485)

Name: NF20927_low_4
Description: NF20927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20927_low_4
NF20927_low_4
[»] chr7 (4 HSPs)
chr7 (136-474)||(219889-220227)
chr7 (19-139)||(219748-219867)
chr7 (248-334)||(37352432-37352519)
chr7 (262-334)||(45030760-45030832)
[»] chr1 (8 HSPs)
chr1 (248-364)||(45753448-45753565)
chr1 (295-364)||(46828526-46828595)
chr1 (248-349)||(5115612-5115714)
chr1 (281-350)||(39973924-39973993)
chr1 (282-335)||(48454603-48454656)
chr1 (282-322)||(2633064-2633104)
chr1 (251-363)||(34596112-34596223)
chr1 (248-363)||(40203070-40203186)
[»] chr3 (6 HSPs)
chr3 (249-349)||(43749481-43749581)
chr3 (248-376)||(28434509-28434637)
chr3 (248-286)||(1680528-1680566)
chr3 (282-354)||(1557736-1557808)
chr3 (243-360)||(25548193-25548312)
chr3 (243-335)||(31419202-31419293)
[»] chr2 (5 HSPs)
chr2 (248-354)||(34354326-34354428)
chr2 (270-360)||(13197271-13197361)
chr2 (308-365)||(21004770-21004827)
chr2 (248-324)||(34355344-34355420)
chr2 (306-370)||(8798361-8798425)
[»] chr4 (5 HSPs)
chr4 (250-363)||(12103832-12103946)
chr4 (248-365)||(7627957-7628075)
chr4 (282-335)||(41370188-41370241)
chr4 (283-335)||(35180625-35180677)
chr4 (248-335)||(44504076-44504164)
[»] chr6 (2 HSPs)
chr6 (248-352)||(26311807-26311913)
chr6 (283-365)||(6546707-6546791)
[»] chr5 (1 HSPs)
chr5 (248-334)||(8761925-8762012)
[»] scaffold0113 (1 HSPs)
scaffold0113 (284-328)||(13972-14016)


Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 136 - 474
Target Start/End: Original strand, 219889 - 220227
Alignment:
Q  136 ttttaaactaactaggttggcatctcgaatgaagaaatgaaagggaatgagtgacattgacattaatacatgaataatgataaagttttattaacgacta 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  219889 ttttaaactaactaggttggcatctcgaatgaagaaatgaaagggaatgagtgacattgacattaatacatgaatcatgataaagttttattaacgacta 219988  T
Q  236 tattcaaaacaatctttaaggattcaaaaagaataaattacttcataaaaagttaaatgtttcaactttcaatatattgattatacaaattttcaaaaaa 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  219989 tattcaaaacaatctttaaggattcaaaaagaataaattacttcataaaaagttaaatgtttcaactttcaatatattgattacacaaattttcaaaaaa 220088  T
Q  336 cattatcatttaaagatctcaaagagtgcctcggaagcacttgctaaacaccctattttttcatacgcttattcaacatcctattttatctctatctctt 435  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  220089 cattatcatttaaagatctcaaagagtgcctcggaagcacttgctaaacaccctattttttcatacgcttattcaacatcctattttatctctatctctt 220188  T
Q  436 ttttcccaacatatcatcaagccatcacatcactccttt 474  Q
    |||||||||||||||||||||||||||||||||||||||    
T  220189 ttttcccaacatatcatcaagccatcacatcactccttt 220227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 219748 - 219867
Alignment:
Q  19 ttaaagccaacaaaaagtgtatacttttactatttgtattttttattttcaaccgttatatttaaacactgataactatttattcaaatataattttctc 118  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  219748 ttaaagccaacaaaaagtgtatacttttactatttgtatttt-tattttcaaccgttatatttaaacactgataactatttattcaaatataattttctc 219846  T
Q  119 tatgcgtacaaaaataatttt 139  Q
    |||||||||||||||||||||    
T  219847 tatgcgtacaaaaataatttt 219867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 334
Target Start/End: Complemental strand, 37352519 - 37352432
Alignment:
Q  248 tctttaaggattcaaaaagaataaattacttcat-aaaaagttaaatgtttcaactttcaatatattgattatacaaattttcaaaaa 334  Q
    |||||||||||||||||| || |||||| | ||| ||||||| |||| |||||| || ||||  ||| |||| |||||||||||||||    
T  37352519 tctttaaggattcaaaaacaagaaattattccattaaaaagtcaaatatttcaatttccaatgcattaattacacaaattttcaaaaa 37352432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 262 - 334
Target Start/End: Original strand, 45030760 - 45030832
Alignment:
Q  262 aaaagaataaattacttcataaaaagttaaatgtttcaactttcaatatattgattatacaaattttcaaaaa 334  Q
    ||||||| |||||| |||||||||| | |||| || ||| ||||||||  ||||| | |||||||||||||||    
T  45030760 aaaagaagaaattatttcataaaaaatcaaatattacaattttcaatactttgataacacaaattttcaaaaa 45030832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 248 - 364
Target Start/End: Original strand, 45753448 - 45753565
Alignment:
Q  248 tctttaaggattcaaaaagaataaattacttcataaaaa-gttaaatgtttcaactttcaatatattgattatacaaattttcaaaaaacattatcattt 346  Q
    ||||||| ||||| ||||||| |||||| |||| ||||| || |||| |||||| |||||||  |||||||| |||||||||||||||||||||||||||    
T  45753448 tctttaaagattctaaaagaagaaattatttcagaaaaatgtcaaatatttcaattttcaatgcattgattacacaaattttcaaaaaacattatcattt 45753547  T
Q  347 aaagatctcaaagagtgc 364  Q
    |||| ||| |||||||||    
T  45753548 aaaggtcttaaagagtgc 45753565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 295 - 364
Target Start/End: Original strand, 46828526 - 46828595
Alignment:
Q  295 tttcaactttcaatatattgattatacaaattttcaaaaaacattatcatttaaagatctcaaagagtgc 364  Q
    |||||| || |||||| ||||||||||||||||||| |||| |||| ||||||||||||| |||||||||    
T  46828526 tttcaatttccaatatgttgattatacaaattttcacaaaaaattaccatttaaagatcttaaagagtgc 46828595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 349
Target Start/End: Complemental strand, 5115714 - 5115612
Alignment:
Q  248 tctttaaggattcaaaaagaataaattacttcataaaaa-gttaaatgtttcaactttcaatatattgattatacaaattttcaaaaaacattatcattt 346  Q
    ||||||||||||| ||||||||||||||  | ||||||| ||||||| |||||| || ||||  ||| |||| |||||||| |||||||  ||| |||||    
T  5115714 tctttaaggattctaaaagaataaattatgttataaaaaagttaaatatttcaatttccaatgcattaattacacaaatttacaaaaaaatttaccattt 5115615  T
Q  347 aaa 349  Q
    |||    
T  5115614 aaa 5115612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 350
Target Start/End: Original strand, 39973924 - 39973993
Alignment:
Q  281 taaaaagttaaatgtttcaactttcaatatattgattatacaaattttcaaaaaacattatcatttaaag 350  Q
    ||||| ||||||  |||||| |||||||  |||||||||||||| ||||| ||||  |||||||||||||    
T  39973924 taaaatgttaaagttttcaattttcaatgcattgattatacaaactttcataaaaagttatcatttaaag 39973993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 335
Target Start/End: Complemental strand, 48454656 - 48454603
Alignment:
Q  282 aaaaagttaaatgtttcaactttcaatatattgattatacaaattttcaaaaaa 335  Q
    |||||||||||| ||||||  ||||||| |||||||||||||| ||||| ||||    
T  48454656 aaaaagttaaatatttcaatcttcaatacattgattatacaaaatttcataaaa 48454603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 322
Target Start/End: Original strand, 2633064 - 2633104
Alignment:
Q  282 aaaaagttaaatgtttcaactttcaatatattgattataca 322  Q
    ||||||||||||||||| | || ||||||||||||||||||    
T  2633064 aaaaagttaaatgtttcgatttccaatatattgattataca 2633104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 251 - 363
Target Start/End: Complemental strand, 34596223 - 34596112
Alignment:
Q  251 ttaaggattcaaaaagaataaattacttcataaaaagttaaatgtttcaactttcaatatattgattatacaaattttcaaaaaacattatcatttaaag 350  Q
    |||||||||| ||||||| |||||| || ||||||  | |||| |||| | |||||||  |||||||| ||| | ||||| ||||  |||||||||||||    
T  34596223 ttaaggattctaaaagaagaaattattttataaaat-tcaaatatttcgattttcaatgcattgattacacataatttcataaaaagttatcatttaaag 34596125  T
Q  351 atctcaaagagtg 363  Q
     ||| ||||||||    
T  34596124 gtcttaaagagtg 34596112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 248 - 363
Target Start/End: Complemental strand, 40203186 - 40203070
Alignment:
Q  248 tctttaaggattcaaaaagaataaattacttcat-aaaaagttaaatgtttcaactttcaatatattgattatacaaattttcaaaaaacattatcattt 346  Q
    ||||||||||||  |||| || |||||| ||||| ||||||| |||| |||||| || ||||  |||||||| ||| ||||||| | ||  ||| |||||    
T  40203186 tctttaaggattacaaaacaagaaattatttcataaaaaagtcaaatatttcaatttccaatgcattgattacacatattttcagacaaagttaccattt 40203087  T
Q  347 aaagatctcaaagagtg 363  Q
    ||||| || ||||||||    
T  40203086 aaagaccttaaagagtg 40203070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 249 - 349
Target Start/End: Complemental strand, 43749581 - 43749481
Alignment:
Q  249 ctttaaggattcaaaaagaataaattacttcat-aaaaagttaaatgtttcaactttcaatatattgattatacaaattttcaaaaaacattatcattta 347  Q
    |||||||||||| |||||||||||||| |  || ||||||| |||| |||||| |||| |||||||||||| |||||| ||||||||| |||||||||||    
T  43749581 ctttaaggattctaaaagaataaattattctattaaaaagtcaaatatttcaattttctatatattgattacacaaatcttcaaaaaa-attatcattta 43749483  T
Q  348 aa 349  Q
    ||    
T  43749482 aa 43749481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 248 - 376
Target Start/End: Original strand, 28434509 - 28434637
Alignment:
Q  248 tctttaaggattcaaaaagaataaattacttcataaaaagttaaatgtttcaactttcaatatattgattatacaaattttcaaaaaacattatcattta 347  Q
    ||||||||||||  || ||||||||||| |||||||||||| |||| |||  | |||| ||  |||||||| | ||||||||||||||  ||| ||| ||    
T  28434509 tctttaaggattttaagagaataaattatttcataaaaagtcaaatattttgattttcgatgcattgattacataaattttcaaaaaaagttaccatata 28434608  T
Q  348 aagatctcaaagagtgcctcggaagcact 376  Q
    ||  ||||||||| || ||||||||||||    
T  28434609 aaagtctcaaagaatgtctcggaagcact 28434637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 286
Target Start/End: Complemental strand, 1680566 - 1680528
Alignment:
Q  248 tctttaaggattcaaaaagaataaattacttcataaaaa 286  Q
    |||||||||||||||||||||||||||| || |||||||    
T  1680566 tctttaaggattcaaaaagaataaattaatttataaaaa 1680528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 354
Target Start/End: Complemental strand, 1557808 - 1557736
Alignment:
Q  282 aaaaagttaaatgtttcaactttcaatatattgattatacaaattttcaaaaaacattatcatttaaagatct 354  Q
    ||||| |||||| ||| || ||| ||||||||||||| | | ||||| | |||| ||||||||||||||||||    
T  1557808 aaaaaattaaatattttaatttttaatatattgattacatatatttttataaaaaattatcatttaaagatct 1557736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 360
Target Start/End: Complemental strand, 25548312 - 25548193
Alignment:
Q  243 aacaatctttaaggattcaaaaagaataaattacttcataaaaa--gttaaatgtttcaactttcaatatattgattatacaaattttcaaaaaacatta 340  Q
    |||| |||||||||| || ||||||| ||| || || |||||||  ||||||| |||||| ||  |||  |||||||| ||| ||||||| ||||  |||    
T  25548312 aacactctttaaggactctaaaagaagaaaatattttataaaaaaagttaaatatttcaatttctaatgcattgattacacatattttcataaaaattta 25548213  T
Q  341 tcatttaaagatctcaaaga 360  Q
    |||||||||| ||| |||||    
T  25548212 tcatttaaaggtcttaaaga 25548193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 335
Target Start/End: Original strand, 31419202 - 31419293
Alignment:
Q  243 aacaatctttaaggattcaaaaagaataaattacttcataaaaagttaaatgtttcaactttcaatatattgattatacaaattttcaaaaaa 335  Q
    |||| |||||||| |||  ||| ||| |||||| | |||||||| |||||| ||| || ||||||| ||||||||| | ||||||||||||||    
T  31419202 aacactctttaagcatttcaaatgaagaaattattccataaaaa-ttaaatatttaaattttcaatgtattgattacataaattttcaaaaaa 31419293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 248 - 354
Target Start/End: Complemental strand, 34354428 - 34354326
Alignment:
Q  248 tctttaaggattcaaaaagaataaattacttcataaaaagttaaatgtttcaactttcaatatattgattatacaaattttcaaaaaacattatcattta 347  Q
    |||||||| |||| ||||||| ||||| ||||| ||||||| |||| |||||| ||| |||||| | |||| ||||||    |||||| |||||||||||    
T  34354428 tctttaagaattctaaaagaagaaattgcttcacaaaaagtcaaatatttcaatttttaatatactaattacacaaat----aaaaaaaattatcattta 34354333  T
Q  348 aagatct 354  Q
    |||||||    
T  34354332 aagatct 34354326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 360
Target Start/End: Original strand, 13197271 - 13197361
Alignment:
Q  270 aaattacttcataaaaagttaaatgtttcaactttcaatatattgattatacaaattttcaaaaaacattatcatttaaagatctcaaaga 360  Q
    |||||| |||||||||||| |||| |||||| ||| |||  ||| |||| | ||||||| | |||| |||||||||||||||||| |||||    
T  13197271 aaattatttcataaaaagtcaaatatttcaatttttaatgcattaattacataaatttttataaaaaattatcatttaaagatcttaaaga 13197361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 308 - 365
Target Start/End: Original strand, 21004770 - 21004827
Alignment:
Q  308 tatattgattatacaaattttcaaaaaacattatcatttaaagatctcaaagagtgcc 365  Q
    ||||||||||| |||||||||||||||| |||| ||||||||  ||| ||||||||||    
T  21004770 tatattgattacacaaattttcaaaaaaaattaccatttaaaagtcttaaagagtgcc 21004827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 248 - 324
Target Start/End: Complemental strand, 34355420 - 34355344
Alignment:
Q  248 tctttaaggattcaaaaagaataaattacttcataaaaagttaaatgtttcaactttcaatatattgattatacaaa 324  Q
    |||||||| |||| ||||||| ||||| ||||||||||| | |||| |||||| ||| ||| ||||||||| |||||    
T  34355420 tctttaagaattctaaaagaagaaattgcttcataaaaaatcaaatatttcaatttttaatgtattgattacacaaa 34355344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 370
Target Start/End: Complemental strand, 8798425 - 8798361
Alignment:
Q  306 aatatattgattatacaaattttcaaaaaacattatcatttaaagatctcaaagagtgcctcgga 370  Q
    |||| |||||||||||| ||||| | |||| |||||||||||||| | | ||||||| |||||||    
T  8798425 aatacattgattatacatatttttataaaaaattatcatttaaaggtattaaagagtacctcgga 8798361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 363
Target Start/End: Complemental strand, 12103946 - 12103832
Alignment:
Q  250 tttaaggattcaaaaagaataaattacttcat-aaaaagttaaatgtttcaactttcaatatattgattatacaaattttcaaaaaacattatcatttaa 348  Q
    ||||||||||| |||||||||||||| ||||| ||||||| ||||  ||| | || ||| | |||||||| ||| ||||||| | || || | |||||||    
T  12103946 tttaaggattctaaaagaataaattatttcataaaaaagtcaaataattcgatttccaaaacattgattacacatattttcatacaaaatcaccatttaa 12103847  T
Q  349 agatctcaaagagtg 363  Q
    |||||| ||||||||    
T  12103846 agatcttaaagagtg 12103832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 365
Target Start/End: Original strand, 7627957 - 7628075
Alignment:
Q  248 tctttaaggattcaaaaagaataaattacttcata-aaaagttaaatgtttcaactttcaatatattgattatacaaattttcaaaaaacattatcattt 346  Q
    |||||||| |||| ||||| | |||||| | |||| |||||| ||||||||||| || ||||| |||| ||| | || |||||||||||  ||| | |||    
T  7627957 tctttaagcattccaaaaggagaaattattccatagaaaagtcaaatgtttcaatttccaatacattggttacataacttttcaaaaaaagttacctttt 7628056  T
Q  347 aaagatctcaaagagtgcc 365  Q
    |||| ||| ||||||||||    
T  7628057 aaaggtcttaaagagtgcc 7628075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 335
Target Start/End: Complemental strand, 41370241 - 41370188
Alignment:
Q  282 aaaaagttaaatgtttcaactttcaatatattgattatacaaattttcaaaaaa 335  Q
    |||||||||||| |||||| |||||||  |||||||| ||||||||||| ||||    
T  41370241 aaaaagttaaatatttcaattttcaatgcattgattacacaaattttcataaaa 41370188  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 283 - 335
Target Start/End: Complemental strand, 35180677 - 35180625
Alignment:
Q  283 aaaagttaaatgtttcaactttcaatatattgattatacaaattttcaaaaaa 335  Q
    |||||| ||||||||||| |||||||| |||||||| | || |||||||||||    
T  35180677 aaaagtcaaatgtttcaattttcaatacattgattacataatttttcaaaaaa 35180625  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 248 - 335
Target Start/End: Complemental strand, 44504164 - 44504076
Alignment:
Q  248 tctttaaggattcaaaaagaataaattacttcataaaa-agttaaatgtttcaactttcaatatattgattatacaaattttcaaaaaa 335  Q
    ||||||||| ||  ||||||| ||||||  |||||||| ||| |||| ||  || |||||||| ||||||||||||||||||| |||||    
T  44504164 tctttaagggtttcaaaagaagaaattatgtcataaaatagtcaaatattataattttcaatacattgattatacaaattttctaaaaa 44504076  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 352
Target Start/End: Original strand, 26311807 - 26311913
Alignment:
Q  248 tctttaaggattcaaaaagaataaattacttcataaaaa--gttaaatgtttcaactttcaatatattgattatacaaattttcaaaaaacattatcatt 345  Q
    |||||||||||||  ||||||||||||| || |||||||  ||||||| |||  | |||||||| ||| |||| ||| ||||| | |||| ||||| |||    
T  26311807 tctttaaggattctgaaagaataaattaatttataaaaatggttaaatattttgattttcaatacattaattacacatatttttataaaatattattatt 26311906  T
Q  346 taaagat 352  Q
    |||||||    
T  26311907 taaagat 26311913  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 365
Target Start/End: Complemental strand, 6546791 - 6546707
Alignment:
Q  283 aaaagttaaatgtttcaactttcaatatattgattatacaaattttca--aaaaacattatcatttaaagatctcaaagagtgcc 365  Q
    ||||||||||| |||||| ||  |||  |||||||  ||| |||||||  ||||| |||||||||||||||||| ||||||||||    
T  6546791 aaaagttaaatttttcaatttctaatgcattgattgcacatattttcataaaaaaaattatcatttaaagatcttaaagagtgcc 6546707  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 334
Target Start/End: Original strand, 8761925 - 8762012
Alignment:
Q  248 tctttaaggattcaaaaagaataaattacttcataaaa-agttaaatgtttcaactttcaatatattgattatacaaattttcaaaaa 334  Q
    ||||||||||||| |||| || |||||| |  |||||| |||||||| |||||| ||||||| ||||||| | | |||||||||||||    
T  8761925 tctttaaggattctaaaaaaagaaattattctataaaaaagttaaatatttcaattttcaatgtattgatgacataaattttcaaaaa 8762012  T

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Target: scaffold0113 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 328
Target Start/End: Original strand, 13972 - 14016
Alignment:
Q  284 aaagttaaatgtttcaactttcaatatattgattatacaaatttt 328  Q
    |||||||||| |||||| |||||||||||||||||  ||||||||    
T  13972 aaagttaaatatttcaattttcaatatattgattacgcaaatttt 14016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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