View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20928_high_6 (Length: 337)
Name: NF20928_high_6
Description: NF20928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20928_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 25900385 - 25900706
Alignment:
| Q |
1 |
ttctacttgcactaccaaatggcgcaacaggtctcacattaaccccataaagatctttaaccaaaacacataaaaactataagtgaatctgactgagcaa |
100 |
Q |
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| T |
25900385 |
ttctacttgcactaccaaatggcgcaacaggtctcacattaaccccataaagatctttaaccaaaacacataaaaactataagtgaatctgactgagcaa |
25900484 |
T |
|
| Q |
101 |
aaaatacaacacaatagtaaataaccatggtagctagcagcgttgtacataccaagccatggcctccttgtaacaaagtagttaacagtcttcaacctca |
200 |
Q |
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| T |
25900485 |
aaaatacaacacaatagtaaataaccatggtagctagcagcgttgtacataccaagccatggcctccttgtaacaaagtagttaacagtcttcaacctca |
25900584 |
T |
|
| Q |
201 |
aaaccgattccaactcagaagggaccgttaaagcaaaatctacaaacaataaacgaagacacacttcgacatcaaacaggtaattcgtccgatttaaaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25900585 |
aaaccgattccaactcagaagggaccgttaaagcaaaatctacaaacaataaacgaagacacacttcgacatcaaacaggtaattcgtccgatttaaaat |
25900684 |
T |
|
| Q |
301 |
tataattaattaagatgacact |
322 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
25900685 |
tataattaattaagatgacact |
25900706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 163; Significance: 5e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 40067852 - 40067512
Alignment:
| Q |
1 |
ttctacttgcactaccaaatggcgcaacaggtctcacattaaccccataaagatctttaaccaaaacacataaaaactataagtgaatctgac------- |
93 |
Q |
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||||||||||||| ||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| | |||||| ||||| |||| |||| |
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| T |
40067852 |
ttctacttgcacttccaaaaggcgcgacaggtctcacattaaccccgtaaagatctttaaccaaaaca-agaaaaacaataagcgaatttgaccaaacaa |
40067754 |
T |
|
| Q |
94 |
-----------tgagcaaaaaatacaaca------caatagtaaataaccatggtagctagcagcgttgtacataccaagccatggcctccttgtaacaa |
176 |
Q |
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| T |
40067753 |
acatcttagactgagcaaaaaattcaatagtacttcaatagtaaataatcatggtagc----agcgttgtacataccaagccatggcctccttgtaacaa |
40067658 |
T |
|
| Q |
177 |
agtagttaacagtcttcaacctcaaaaccgattccaactcagaagggaccgttaaagcaaaatctacaaacaat-aaacgaagacacacttcgacatcaa |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||| ||||||||||| |
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| T |
40067657 |
agtagttaacagtcttcaacctcaaaaccgattccaactcagaagggactgttaaagcaaaatctacaaacaataaaacgaagatacagttcgacatcaa |
40067558 |
T |
|
| Q |
276 |
acaggtaattcgtccgatttaaaattataattaattaagatgacac |
321 |
Q |
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||||||||| | |||||||||||||||| ||||||||||||||||| |
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| T |
40067557 |
acaggtaatccatccgatttaaaattattattaattaagatgacac |
40067512 |
T |
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