View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20928_low_1 (Length: 631)
Name: NF20928_low_1
Description: NF20928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20928_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 18 - 616
Target Start/End: Complemental strand, 4847039 - 4846444
Alignment:
| Q |
18 |
gaagcacatttatgggataacagttgcaagaaggaagggcaaacaaggaaaggaagacaaggttagtaaccaaaaattcttaaaacaattttacattatt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4847039 |
gaagcacatttatgggataacagttgcaagaaggaagggcaaacaaggaaaggaagacaaggttagtaaccaaaaattcttaaaacaattttacattatt |
4846940 |
T |
|
| Q |
118 |
tgtaacatagtacactttttacatctgaaaatattggtccattattctgacctgtgtcaactaacatgtcacatgttcacattgtggatgacaaatcaac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4846939 |
tgtaacatagtacactttttacatctgaaaatattggtccattattctgacctgtgtcaactaacatgtcacatgttcacattgtggatgacaaatcaac |
4846840 |
T |
|
| Q |
218 |
aattcattgtacatcacagtttatttgggtatgtactatgtcctttttcatagatctannnnnnnn-caaa-accctattcccactataactgatatata |
315 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
4846839 |
aattcattgtacatcacagtttatttgggtatgtactatgtcctttttcatagatctatttttttttcaaacaccctattcccactataactgatatata |
4846740 |
T |
|
| Q |
316 |
tggtaaatttttgtttgtgaaaatgttactaaaggtggttatgatatggaagagaaagctgcaagagcttatgatcttgctgctctcaaatattggggac |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4846739 |
tggtaaatttttgtttgtgaaaatgttactaaaggtggttatgatatggaagagaaagctgcaagagcttatgatcttgctgctctcaaatattggggac |
4846640 |
T |
|
| Q |
416 |
cttcaacacatataaacttctcggtatgtttcacggcatagtgactttaacgacagagttcaaattctctctgagacagttacaaaatgattatcggtgt |
515 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4846639 |
cttcaacgcatataaacttctcggtatgtttcacggcatagtgactttaacgacagagttcaaattctctctgagacagttacaaaatgatcatcggtgt |
4846540 |
T |
|
| Q |
516 |
cagtttaattaaaaatatttttccccttaccggattatttnnnnnnnnnnnnnnnnncaagcgaaattttttctggatttgtactccttagagtctaatt |
615 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4846539 |
cagtttaattaaaaatatttttccccttaccggattattt-----ttaaaaaaaaaacgagcgaaattttttctggatttgtactccttagagtctaatt |
4846445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 347 - 441
Target Start/End: Original strand, 47753422 - 47753516
Alignment:
| Q |
347 |
aaggtggttatgatatggaagagaaagctgcaagagcttatgatcttgctgctctcaaatattggggaccttcaacacatataaacttctcggta |
441 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || ||||| || |||||||||||||||||||| ||||||||| ||||| |
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| T |
47753422 |
aaggtggttatgatatggaagagaaagctgcaagagcttatgatcaagcagctcttaagtattggggaccttcaacacacataaacttcccggta |
47753516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 47753099 - 47753174
Alignment:
| Q |
18 |
gaagcacatttatgggataacagttgcaagaaggaagggcaaacaaggaaaggaagacaaggttagtaaccaaaaa |
93 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| | |||||| |
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| T |
47753099 |
gaagcacatttatgggataacagttgcaagaaggaaggacaaacaagaaaaggaagacaaggttagtgagcaaaaa |
47753174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 467 - 537
Target Start/End: Original strand, 40067467 - 40067537
Alignment:
| Q |
467 |
gacagagttcaaattctctctgagacagttacaaaatgattatcggtgtcagtttaattaaaaatattttt |
537 |
Q |
| |
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|||||||||||||||||||| ||| | ||| |||||||| |||||||||| |||||||| |||| |||| |
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| T |
40067467 |
gacagagttcaaattctctcggaggcggttgtaaaatgatgatcggtgtcatcttaattaataataatttt |
40067537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 348 - 416
Target Start/End: Complemental strand, 5178200 - 5178132
Alignment:
| Q |
348 |
aggtggttatgatatggaagagaaagctgcaagagcttatgatcttgctgctctcaaatattggggacc |
416 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||| | ||||| ||||| ||||||||||| |
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|
| T |
5178200 |
aggtggttatgatatagaagaaaaagctgcaagagcttatgatatggctgcactcaagtattggggacc |
5178132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 348 - 435
Target Start/End: Original strand, 40190010 - 40190097
Alignment:
| Q |
348 |
aggtggttatgatatggaagagaaagctgcaagagcttatgatcttgctgctctcaaatattggggaccttcaacacatataaacttc |
435 |
Q |
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||||||||||||||||||||| |||||||| ||||||||||||| || || ||||| ||||||||||| || || || ||||||||| |
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| T |
40190010 |
aggtggttatgatatggaagaaaaagctgctagagcttatgatcaagcagcactcaagtattggggaccatctactcacataaacttc |
40190097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 348 - 413
Target Start/End: Complemental strand, 53235177 - 53235112
Alignment:
| Q |
348 |
aggtggttatgatatggaagagaaagctgcaagagcttatgatcttgctgctctcaaatattgggg |
413 |
Q |
| |
|
|||||| ||||||| |||||||||||| || |||||||||||||||||||||||||| || ||||| |
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|
| T |
53235177 |
aggtggctatgataaggaagagaaagcagctagagcttatgatcttgctgctctcaagtactgggg |
53235112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 40189493 - 40189555
Alignment:
| Q |
18 |
gaagcacatttatgggataacagttgcaagaaggaagggcaaacaaggaaaggaagacaaggt |
80 |
Q |
| |
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||||| ||||||||||| |||||||||||||| ||||| |||| || ||||||||||||||| |
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|
| T |
40189493 |
gaagctcatttatgggacaacagttgcaagaaagaaggccaaagcagaaaaggaagacaaggt |
40189555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 7210463 - 7210525
Alignment:
| Q |
18 |
gaagcacatttatgggataacagttgcaagaaggaagggcaaacaaggaaaggaagacaaggt |
80 |
Q |
| |
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|||||||||||||||||||| ||||||| || ||||||||||||||||||||||| |||||| |
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| T |
7210463 |
gaagcacatttatgggataatagttgcagaaaagaagggcaaacaaggaaaggaaggcaaggt |
7210525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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