View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20928_low_10 (Length: 246)

Name: NF20928_low_10
Description: NF20928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20928_low_10
NF20928_low_10
[»] scaffold0145 (1 HSPs)
scaffold0145 (8-239)||(12552-12783)
[»] chr4 (4 HSPs)
chr4 (8-239)||(16284934-16285165)
chr4 (8-165)||(18231449-18231604)
chr4 (9-165)||(11555916-11556070)
chr4 (22-135)||(11098355-11098468)
[»] chr6 (4 HSPs)
chr6 (8-239)||(10641218-10641449)
chr6 (8-239)||(14970060-14970293)
chr6 (8-163)||(10906699-10906854)
chr6 (49-165)||(9191065-9191181)
[»] chr7 (5 HSPs)
chr7 (9-165)||(22614701-22614857)
chr7 (8-165)||(11655474-11655631)
chr7 (8-238)||(20025970-20026200)
chr7 (22-123)||(13477489-13477596)
chr7 (64-236)||(4531649-4531820)
[»] chr5 (2 HSPs)
chr5 (8-239)||(24831924-24832161)
chr5 (24-159)||(13935715-13935849)
[»] chr3 (6 HSPs)
chr3 (8-239)||(14481524-14481761)
chr3 (74-224)||(17790941-17791091)
chr3 (74-224)||(19099381-19099531)
chr3 (98-158)||(22159871-22159931)
chr3 (98-158)||(21975275-21975335)
chr3 (98-158)||(21997706-21997766)
[»] chr2 (3 HSPs)
chr2 (21-236)||(44586360-44586574)
chr2 (132-239)||(24786268-24786375)
chr2 (74-159)||(16862347-16862432)
[»] scaffold1001 (1 HSPs)
scaffold1001 (8-165)||(1389-1545)
[»] chr1 (1 HSPs)
chr1 (46-159)||(1567041-1567154)


Alignment Details
Target: scaffold0145 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 8 - 239
Target Start/End: Original strand, 12552 - 12783
Alignment:
Q  8 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtt 107  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  12552 gacatcatcattctcatcattattataatataaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtc 12651  T
Q  108 atagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattctatgcta 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |    
T  12652 atagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcttgtcgttattccacaccttacgcgtgactcattctatgcca 12751  T
Q  208 acatccatttattttattttagtattcatctc 239  Q
    ||||||||||||||||||||||||||||||||    
T  12752 acatccatttattttattttagtattcatctc 12783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 8 - 239
Target Start/End: Complemental strand, 16285165 - 16284934
Alignment:
Q  8 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtt 107  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  16285165 gacatcatcattctcatcattattataatataaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtc 16285066  T
Q  108 atagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattctatgcta 207  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |    
T  16285065 atagttataggactccccatcattactctttatcatccacttatatcaccaccttatcttgtcgttattccacaccttacgcgtgactcattctatgcca 16284966  T
Q  208 acatccatttattttattttagtattcatctc 239  Q
    ||||||||||||||||||||||||||||||||    
T  16284965 acatccatttattttattttagtattcatctc 16284934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 8 - 165
Target Start/End: Complemental strand, 18231604 - 18231449
Alignment:
Q  8 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtt 107  Q
    |||||| ||||||||||||||||||||||| ||  ||||||||| | |||||||||||||||||||||||||||||||||| ||||||| ||||| ||||    
T  18231604 gacatcgtcattctcatcattattataatataacatcatcattttctatcgtagtaatttctttacatatatataatattaatcgtcatcactctttgtt 18231505  T
Q  108 atagttataggactccccatcattactctttatcatccgcttatatcaccaccttatc 165  Q
    | || ||| ||| ||| |||||||||||| ||||| ||| ||||||||||||||||||    
T  18231504 acag-tat-ggattcctcatcattactctctatcaaccgtttatatcaccaccttatc 18231449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 9 - 165
Target Start/End: Original strand, 11555916 - 11556070
Alignment:
Q  9 acatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtta 108  Q
    ||||| ||||||||||||||||||||||| ||  ||| ||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||| ||| |    
T  11555916 acatcgtcattctcatcattattataatataacatcaacatttcctatcgtagtaatttctttacatatatataatattaatcgtcatcactctttgtga 11556015  T
Q  109 tagttataggactccccatcattactctttatcatccgcttatatcaccaccttatc 165  Q
     || ||| ||| ||  |||||||||||| ||||| ||  ||||||||||||||||||    
T  11556016 cag-tat-ggattcatcatcattactctctatcaaccatttatatcaccaccttatc 11556070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 135
Target Start/End: Complemental strand, 11098468 - 11098355
Alignment:
Q  22 catcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgttatagttataggact 121  Q
    |||||||||||||||| ||  |||| ||||||||   |||||||||||||||||||||||||||||| ||||||| ||||||  ||| | ||||||||||    
T  11098468 catcattattataatataacatcattatttcccacaatagtaatttctttacatatatataatattaatcgtcatcactctccattacaattataggact 11098369  T
Q  122 ccccatcattactc 135  Q
    || |||||||||||    
T  11098368 cctcatcattactc 11098355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 8 - 239
Target Start/End: Complemental strand, 10641449 - 10641218
Alignment:
Q  8 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtt 107  Q
    |||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||     
T  10641449 gacatcatcattctcatcattattataatataacctcataatttcccatcgtagtaatttctttacatatatataatattaatcgtcatcgctctctgtc 10641350  T
Q  108 atagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattctatgcta 207  Q
    | |||||||||||||| | |||||||||| ||||||||||||||||||||||||||||   || ||| ||||| ||| ||| ||||||||||||| || |    
T  10641349 acagttataggactcctcgtcattactctctatcatccgcttatatcaccaccttatctcttcattaatccacgcctcacgtgtgactcattctacgcca 10641250  T
Q  208 acatccatttattttattttagtattcatctc 239  Q
    ||||||||||| ||||||||| ||||||||||    
T  10641249 acatccatttactttattttattattcatctc 10641218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 8 - 239
Target Start/End: Original strand, 14970060 - 14970293
Alignment:
Q  8 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatat--atataatattactcgtcattactctctg 105  Q
    |||||| ||||||||||  ||||||||||| ||  ||||||||||||||||  ||||||||| || ||||  |||||||||||  |||||| | ||| ||    
T  14970060 gacatcgtcattctcattgttattataatataacatcatcatttcccatcgcggtaatttctataaatatatatataatattaaccgtcatcattctttg 14970159  T
Q  106 ttatagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattctatgc 205  Q
    | | |||| ||||||||| |||||||||||| ||||||||  |||||||||||| |||||   || ||| ||||||| ||||| |||||||||||||       
T  14970160 tcacagttgtaggactcctcatcattactctctatcatccatttatatcaccactttatctcttcattaatccacactttacgagtgactcattctacat 14970259  T
Q  206 taacatccatttattttattttagtattcatctc 239  Q
     ||||| | |||||||||||||| ||||| ||||    
T  14970260 caacattcctttattttattttattattcttctc 14970293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 163
Target Start/End: Complemental strand, 10906854 - 10906699
Alignment:
Q  8 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtt 107  Q
    |||||| ||||||||||||||||||||||| ||  |||||||||| |||| || | || | || ||||||| |||||||||  |  | | |||||||||     
T  10906854 gacatcgtcattctcatcattattataatataacatcatcatttcacatcctatttatatgttgacatatacataatattaacccccttcactctctgtc 10906755  T
Q  108 atagttataggactccccatcattactctttatcatccgcttatatcaccacctta 163  Q
      |||||||||| ||| | |||||||||||| ||| ||| ||||||||||||||||    
T  10906754 gcagttataggattcctcgtcattactctttgtcaaccgtttatatcaccacctta 10906699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 165
Target Start/End: Original strand, 9191065 - 9191181
Alignment:
Q  49 tttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgttatagttataggactccccatcattactctttatcatccgct 148  Q
    |||| ||||||| | |||| || |||||||||| |||| | || |||| ||||| | | | |||||||||| ||| |||||||||||| ||||| ||| |    
T  9191065 tttctcatcgtatttatttattcacatatatattatatcaatcatcatcactctttatcacagttataggattcctcatcattactctctatcaaccgtt 9191164  T
Q  149 tatatcaccaccttatc 165  Q
    |||||||||||||||||    
T  9191165 tatatcaccaccttatc 9191181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 9 - 165
Target Start/End: Complemental strand, 22614857 - 22614701
Alignment:
Q  9 acatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtta 108  Q
    ||||| |||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |    
T  22614857 acatcgtcattctcttcattattataatataacctcatcatttcccatcgtagtaatttctttacatatatataatattaatcgtcatcactctctgtca 22614758  T
Q  109 tagttataggactccccatcattactctttatcatccgcttatatcaccaccttatc 165  Q
    ||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  22614757 tagttataggactcctcatcaatactctctatcatccgcttatatcaccaccttatc 22614701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 8 - 165
Target Start/End: Original strand, 11655474 - 11655631
Alignment:
Q  8 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtt 107  Q
    |||||| |||||||| |||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||| || || | |||||||||     
T  11655474 gacatcgtcattctcttcattattataatataacctcatcattttccatcgtagtaatttctttacatatatataatattaatcatcgtcactctctgtc 11655573  T
Q  108 atagttataggactccccatcattactctttatcatccgcttatatcaccaccttatc 165  Q
    | || ||||||||||| ||||| || ||||||||||||||||||||||||||||||||    
T  11655574 acagctataggactcctcatcaatattctttatcatccgcttatatcaccaccttatc 11655631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 8 - 238
Target Start/End: Original strand, 20025970 - 20026200
Alignment:
Q  8 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtt 107  Q
    |||||||||||| ||||  ||||||||||| ||  ||||||||| ||||| | |||||||||||||||||||||||||| | ||||||| ||||| |||     
T  20025970 gacatcatcattgtcattgttattataatataacatcatcatttgccatcatggtaatttctttacatatatataatatgaatcgtcatcactctttgtc 20026069  T
Q  108 atagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattctatgcta 207  Q
    |||||| ||||||||| | |||||| ||| ||||||  | ||||||||| ||||||||   || ||| || |||||||||||||||||||||  | |  |    
T  20026070 atagttgtaggactcctcttcattattctctatcatatgtttatatcacaaccttatctcttcattaatcaacaccttacgcgtgactcatttgacgtca 20026169  T
Q  208 acatccatttattttattttagtattcatct 238  Q
    |||||| |||||| ||||||| |||||||||    
T  20026170 acatccctttattctattttattattcatct 20026200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 123
Target Start/End: Complemental strand, 13477596 - 13477489
Alignment:
Q  22 catcattattataatacaaactcatcatttcccatcgtagtaatttctttacatata------tataatattactcgtcattactctctgttatagttat 115  Q
    |||||||||||||||| ||  ||||| ||||||||||||||||||||||||||||||      |||||||||| ||||||| ||||| ||||| ||||||    
T  13477596 catcattattataatataacatcatcctttcccatcgtagtaatttctttacatatatatatatataatattaatcgtcatcactctttgttacagttat 13477497  T
Q  116 aggactcc 123  Q
    ||||||||    
T  13477496 aggactcc 13477489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 236
Target Start/End: Complemental strand, 4531820 - 4531649
Alignment:
Q  64 atttctttacatatatataatattactcgtcattactctctgttatagttataggactccccatcattactctttatcatccgcttatatcaccacctta 163  Q
    |||| |||||||||||||||||| | | ||||| |||||  || | | |||| ||| ||| |||||||||||| ||||| ||| ||||||||||||||||    
T  4531820 atttatttacatatatataatatcaattgtcatcactcttcgtcaca-ttat-ggattcctcatcattactctctatcaaccgtttatatcaccacctta 4531723  T
Q  164 tcctgtcgttattccacaccttacgcgtgactca-ttctatgctaacatccatttattttattttagtattcat 236  Q
    ||   || ||| ||||  |||||| ||||||||| || || || |||| || | |||||||||||| |||||||    
T  4531722 tctcttcattaatccaacccttacacgtgactcatttatacgccaacacccctctattttattttattattcat 4531649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 8 - 239
Target Start/End: Complemental strand, 24832161 - 24831924
Alignment:
Q  8 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatat------ataatattactcgtcattactc 101  Q
    |||||| |||||||||||| ||||||| || || ||||||||||| ||||||||||||||||||||||||||      ||||||||| || |||| ||||    
T  24832161 gacatcgtcattctcatcaatattatagtataacctcatcatttctcatcgtagtaatttctttacatatatgtatatataatattaatcatcatcactc 24832062  T
Q  102 tctgttatagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattct 201  Q
    | ||| | | |||||||||||| |||||||||||| ||||||||||||| ||||||| | ||||   || ||| || || ||||||||||||||||||||    
T  24832061 tttgtcacaattataggactcctcatcattactctctatcatccgcttacatcaccatcgtatctcttcattagtcaactccttacgcgtgactcattct 24831962  T
Q  202 atgctaacatccatttattttattttagtattcatctc 239  Q
    | || ||||||| |||||||||||||| ||||||||||    
T  24831961 acgccaacatccctttattttattttattattcatctc 24831924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 159
Target Start/End: Original strand, 13935715 - 13935849
Alignment:
Q  24 tcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgttatagttataggactcc 123  Q
    |||||||||||||| ||  |||| |||||| |||||| | |||  |||||||| ||||| ||| | | ||||| ||||| ||| |  ||||||||| |||    
T  13935715 tcattattataatataacatcattatttcc-atcgtatttattcatttacatagatatagtatcaattgtcatcactctttgtcaccgttataggattcc 13935813  T
Q  124 ccatcattactctttatcatccgcttatatcaccac 159  Q
      ||||||||||| ||||| ||| ||||||||||||    
T  13935814 taatcattactctctatcaaccgtttatatcaccac 13935849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 6e-49; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 8 - 239
Target Start/End: Complemental strand, 14481761 - 14481524
Alignment:
Q  8 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatata------atattactcgtcattactc 101  Q
    |||||| |||| ||||||| ||||||| || || |||||||| ||||||||||||||||||||||||||||||||      |||||| || |||| ||||    
T  14481761 gacatcgtcatcctcatcaatattatagtataacctcatcatgtcccatcgtagtaatttctttacatatatatatatataatattaatcatcatcactc 14481662  T
Q  102 tctgttatagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattct 201  Q
    | ||| | |||||||||||||| |||||||||||| ||||||||||||| |||||||   ||||   || ||| ||||| ||||||||||||||||||||    
T  14481661 tttgtcacagttataggactcctcatcattactctctatcatccgcttacatcaccattgtatctcttcattaatccactccttacgcgtgactcattct 14481562  T
Q  202 atgctaacatccatttattttattttagtattcatctc 239  Q
    | || ||||||| |||||||||||||| ||||||||||    
T  14481561 acgccaacatccctttattttattttattattcatctc 14481524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 74 - 224
Target Start/End: Original strand, 17790941 - 17791091
Alignment:
Q  74 atatatataatattactcgtcattactctctgttatagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgtt 173  Q
    ||||||||||||||| || |||| ||||||||| | |||||||||||||| |||||||||||| | ||||||||||||| || |||||||||   || ||    
T  17790941 atatatataatattaatcatcatcactctctgtcaaagttataggactcctcatcattactctctttcatccgcttataccatcaccttatctcttcatt 17791040  T
Q  174 attccacaccttacgcgtgactcattctatgctaacatccatttattttat 224  Q
    | ||||||| |||| |||| ||||||||| ||| |||||| |||| |||||    
T  17791041 aatccacactttactcgtggctcattctacgctgacatccctttactttat 17791091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 74 - 224
Target Start/End: Original strand, 19099381 - 19099531
Alignment:
Q  74 atatatataatattactcgtcattactctctgttatagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgtt 173  Q
    ||||||||||||||| || |||| ||||||||| | |||||||||||||| |||||||||||| | ||||||||||||| || |||||||||   || ||    
T  19099381 atatatataatattaatcatcatcactctctgtcaaagttataggactcctcatcattactctctttcatccgcttataccatcaccttatctcttcatt 19099480  T
Q  174 attccacaccttacgcgtgactcattctatgctaacatccatttattttat 224  Q
    | ||||||| |||| |||| ||||||||| ||| |||||| |||| |||||    
T  19099481 aatccacactttactcgtggctcattctacgctgacatccctttactttat 19099531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 22159871 - 22159931
Alignment:
Q  98 actctctgttatagttataggactccccatcattactctttatcatccgcttatatcacca 158  Q
    ||||| ||| |||||||||||| ||| |||||||||||| ||||| ||| |||||||||||    
T  22159871 actctttgtcatagttataggattcctcatcattactctctatcaaccgtttatatcacca 22159931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 21975275 - 21975335
Alignment:
Q  98 actctctgttatagttataggactccccatcattactctttatcatccgcttatatcacca 158  Q
    ||||| ||| |||||||| ||| ||| |||||||||||| ||||| ||| |||||||||||    
T  21975275 actctttgtcatagttattggattcctcatcattactctctatcaaccgtttatatcacca 21975335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 21997706 - 21997766
Alignment:
Q  98 actctctgttatagttataggactccccatcattactctttatcatccgcttatatcacca 158  Q
    ||||| ||| |||||||| ||| ||| |||||||||||| ||||| ||| |||||||||||    
T  21997706 actctttgtcatagttattggattcctcatcattactctctatcaaccgtttatatcacca 21997766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 236
Target Start/End: Complemental strand, 44586574 - 44586360
Alignment:
Q  21 tcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgttatagttataggac 120  Q
    |||| |||||||||||  ||  ||||||||||  ||||||||||||||||||||||||||||||| || ||||||| ||||| ||||| || ||| |||     
T  44586574 tcattattattataatttaacatcatcatttcatatcgtagtaatttctttacatatatataatactaatcgtcatcactctttgttacag-tat-ggat 44586477  T
Q  121 tccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactca-ttctatgctaacatccatttat 219  Q
    ||| |||||||||||| ||||| ||| ||||||||||||||||||   |  ||| ||||  |||||||| ||||||| |||||||  ||||||| | |||    
T  44586476 tcctcatcattactctctatcaaccgtttatatcaccaccttatctctttattaatccaacccttacgcatgactcatttctatgtcaacatccctctat 44586377  T
Q  220 tttattttagtattcat 236  Q
    ||||||| | |||||||    
T  44586376 tttatttcattattcat 44586360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 239
Target Start/End: Original strand, 24786268 - 24786375
Alignment:
Q  132 actctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattctatgctaacatccatttattttattttagta 231  Q
    ||||| |||||| || |||||||  |||||| || | || ||| || | |||||||| |||||| |||||| |  ||||||| |||||||||||||| ||    
T  24786268 actctctatcattcgtttatatcttcaccttctcttttcattaatctataccttacgtgtgacttattctacgtcaacatccctttattttattttatta 24786367  T
Q  232 ttcatctc 239  Q
    ||||||||    
T  24786368 ttcatctc 24786375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 159
Target Start/End: Original strand, 16862347 - 16862432
Alignment:
Q  74 atatatataatattactcgtcattactctctgttatagttataggactccccatcattactctttatcatccgcttatatcaccac 159  Q
    ||||||||||||||| || ||   || || |||| ||||||||||| ||| |||||||| ||||||||| ||| |||||| |||||    
T  16862347 atatatataatattaatcatcgacaccctttgttgtagttataggattcctcatcattagtctttatcaaccgtttatattaccac 16862432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1001 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold1001
Description:

Target: scaffold1001; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 165
Target Start/End: Original strand, 1389 - 1545
Alignment:
Q  8 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtt 107  Q
    |||||| ||||||||||||||||||||||| || |||||||||| |||| || ||||||| ||| || ||||| ||||||| | ||||| ||||||| |     
T  1389 gacatcgtcattctcatcattattataatataacctcatcattttccattgttgtaatttatttccacatata-aatattaatagtcatcactctctttc 1487  T
Q  108 atagttataggactccccatcattactctttatcatccgcttatatcaccaccttatc 165  Q
    |  ||||||||||||| ||| | |||||| |||||||||| ||| ||| ||| |||||    
T  1488 acggttataggactcctcataaatactctatatcatccgcatatgtcatcacattatc 1545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 159
Target Start/End: Complemental strand, 1567154 - 1567041
Alignment:
Q  46 tcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgttatagttataggactccccatcattactctttatcatcc 145  Q
    ||||||| ||||||| | |||| |||||||||||||||||| | ||||||| ||||| ||| | | ||||| || ||| ||| ||||| || ||||  ||    
T  1567154 tcatttctcatcgtatttatttgtttacatatatataatatcaatcgtcatcactctttgtcacaattatatgattcctcattattaccctctatccacc 1567055  T
Q  146 gcttatatcaccac 159  Q
    | ||||||||||||    
T  1567054 gtttatatcaccac 1567041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University