View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20928_low_2 (Length: 595)

Name: NF20928_low_2
Description: NF20928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20928_low_2
NF20928_low_2
[»] chr6 (6 HSPs)
chr6 (21-204)||(13166904-13167087)
chr6 (518-590)||(13167356-13167428)
chr6 (497-595)||(21861989-21862090)
chr6 (498-593)||(10741471-10741566)
chr6 (553-592)||(21862332-21862371)
chr6 (347-387)||(13167229-13167269)
[»] chr5 (5 HSPs)
chr5 (498-595)||(11335422-11335517)
chr5 (514-595)||(9511766-9511847)
chr5 (530-590)||(9511813-9511873)
chr5 (525-593)||(11335393-11335459)
chr5 (498-595)||(24136746-24136847)
[»] chr4 (6 HSPs)
chr4 (512-595)||(54147638-54147721)
chr4 (525-595)||(16870623-16870693)
chr4 (498-567)||(54147589-54147658)
chr4 (525-595)||(54147682-54147752)
chr4 (508-571)||(24225457-24225524)
chr4 (524-592)||(42265425-42265492)
[»] chr7 (6 HSPs)
chr7 (500-594)||(21813794-21813888)
chr7 (525-595)||(46963848-46963918)
chr7 (515-590)||(24487088-24487162)
chr7 (498-595)||(44338226-44338326)
chr7 (525-595)||(11828607-11828677)
chr7 (498-571)||(6530574-6530647)
[»] chr2 (8 HSPs)
chr2 (525-595)||(8986185-8986255)
chr2 (512-574)||(32290583-32290645)
chr2 (512-595)||(38584134-38584217)
chr2 (525-595)||(1173581-1173651)
chr2 (524-570)||(1173637-1173683)
chr2 (498-595)||(38584200-38584301)
chr2 (525-559)||(32290561-32290595)
chr2 (532-590)||(38584108-38584166)
[»] chr1 (3 HSPs)
chr1 (498-595)||(19825115-19825215)
chr1 (529-593)||(15630044-15630108)
chr1 (525-573)||(19825106-19825154)
[»] chr3 (5 HSPs)
chr3 (516-595)||(50295517-50295596)
chr3 (525-570)||(2593544-2593589)
chr3 (554-595)||(42530734-42530775)
chr3 (549-585)||(46692105-46692141)
chr3 (347-383)||(50295343-50295379)
[»] chr8 (2 HSPs)
chr8 (498-595)||(20241903-20242003)
chr8 (498-595)||(20251064-20251164)
[»] scaffold0025 (1 HSPs)
scaffold0025 (515-574)||(154941-155004)
[»] scaffold0499 (1 HSPs)
scaffold0499 (515-574)||(7316-7378)


Alignment Details
Target: chr6 (Bit Score: 135; Significance: 5e-70; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 21 - 204
Target Start/End: Original strand, 13166904 - 13167087
Alignment:
Q  21 tgaaagattagttcactttgtttannnnnnngctttgatgggttataatctatgcaaccggcagttgggtttttgcttatattttgtgttgctatgtgtt 120  Q
    |||||||||||||| |||||||||       ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  13166904 tgaaagattagttctctttgtttatttttttgctttgatgggttataatctatgcaaccggcagctgggtttttgcttatattttgtgttgctatatgtt 13167003  T
Q  121 ggcacgtgacaactaccgaatgattgacttcctgtggtacctttggtgaagggtttttaataatatgattgaggttggtgattc 204  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||    
T  13167004 ggcacgtgacaactaccgaaggattgacttcctgtggtacctttggggaagggttttttataatatgattgaggttggagattc 13167087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 518 - 590
Target Start/End: Original strand, 13167356 - 13167428
Alignment:
Q  518 caattggtttgtttgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttg 590  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  13167356 caatttgtttgtttgtttggtgggtcaagtgctcgcaatttgcttgtttggtgagtcgaattctcacactttg 13167428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 497 - 595
Target Start/End: Original strand, 21861989 - 21862090
Alignment:
Q  497 agtgagtcaacataatgctcacaattggtttgtttgtttggtgggtc---aagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggtt 593  Q
    |||||||||| ||| | ||||||||||||||||||||||| | |||    ||| ||||||||||||||||||||||||||| |||||||||| |||||||    
T  21861989 agtgagtcaaaatagttctcacaattggtttgtttgtttgtttggtgggaaagcgctcacaatttgcttgtttggtgagtcgaattctcacattttggtt 21862088  T
Q  594 gt 595  Q
    ||    
T  21862089 gt 21862090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 498 - 593
Target Start/End: Original strand, 10741471 - 10741566
Alignment:
Q  498 gtgagtcaacataatgctcacaattggtttgtttgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggtt 593  Q
    ||||||||| ||| || |||||||| ||||||||||||||||||||| |||    || |||| ||||| |||||||| | | |||||| |||||||    
T  10741471 gtgagtcaagatagtgttcacaatttgtttgtttgtttggtgggtcaggtgtgagcactttggttgttcggtgagtcgagtactcacaatttggtt 10741566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 553 - 592
Target Start/End: Original strand, 21862332 - 21862371
Alignment:
Q  553 caatttgcttgtttggtgagtcaaattctcacactttggt 592  Q
    ||||||| |||||||||||||| |||||||||||||||||    
T  21862332 caatttggttgtttggtgagtctaattctcacactttggt 21862371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 347 - 387
Target Start/End: Original strand, 13167229 - 13167269
Alignment:
Q  347 atgtttgtctatgcttgctttggttcagcttgtcttggttc 387  Q
    |||||||||| || ||||||||| |||||||||||||||||    
T  13167229 atgtttgtctctggttgctttgggtcagcttgtcttggttc 13167269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 498 - 595
Target Start/End: Complemental strand, 11335517 - 11335422
Alignment:
Q  498 gtgagtcaacataatgctcacaattggtttgtttgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggttgt 595  Q
    ||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |  || | ||||||||||||||||    
T  11335517 gtgagtcaagatagtgctcacaattggtttgtttgtttggcgggtcaagtgctcacaatttgtttgtttggtggg--aagtactcacactttggttgt 11335422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 514 - 595
Target Start/End: Original strand, 9511766 - 9511847
Alignment:
Q  514 ctcacaattggtttgtttgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggttgt 595  Q
    ||||||||| |||||||||||||||| ||| |||||||||| || | |||||||||||||| | | |||||| |||||||||    
T  9511766 ctcacaattcgtttgtttgtttggtgagtcgagtgctcacacttcggttgtttggtgagtcgagtgctcacaatttggttgt 9511847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 530 - 590
Target Start/End: Original strand, 9511813 - 9511873
Alignment:
Q  530 ttgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttg 590  Q
    |||||||||| ||| ||||||||||||||| ||||||||||||| |||| |||||| ||||    
T  9511813 ttgtttggtgagtcgagtgctcacaatttggttgtttggtgagttaaatactcacaatttg 9511873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 525 - 593
Target Start/End: Complemental strand, 11335459 - 11335393
Alignment:
Q  525 tttgtttgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggtt 593  Q
    |||||||||||||||||  |||| |||||| |||| |||||||||||||| ||| |||||| |||||||    
T  11335459 tttgtttgtttggtggg--aagtactcacactttggttgtttggtgagtcgaatgctcacaatttggtt 11335393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 498 - 595
Target Start/End: Original strand, 24136746 - 24136847
Alignment:
Q  498 gtgagtcaacataatgctcacaattggtttgtt----tgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggtt 593  Q
    ||||||||| ||| |||||||||||||||||||    ||||||||  || |||  |||| |||||||||||| |||||||| | |||||||| | |||||    
T  24136746 gtgagtcaaaatagtgctcacaattggtttgttcgtttgtttggtatgtaaagcactcataatttgcttgttgggtgagtcgagttctcacattatggtt 24136845  T
Q  594 gt 595  Q
    ||    
T  24136846 gt 24136847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 512 - 595
Target Start/End: Original strand, 54147638 - 54147721
Alignment:
Q  512 tgctcacaattggtttgtttgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggttgt 595  Q
    ||||||| ||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||  | |||||||||| |||||    
T  54147638 tgctcactattggattgtttgtttggtgggtcaagtgctcataatttgtttgtttggtgagtcaggtgctcacactttagttgt 54147721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 525 - 595
Target Start/End: Original strand, 16870623 - 16870693
Alignment:
Q  525 tttgtttgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggttgt 595  Q
    ||||||||||||||||||||||  |||| ||||||||||||||||||||| | ||||||||||||||||||    
T  16870623 tttgtttgtttggtgggtcaagaactcataatttgcttgtttggtgagtcgatttctcacactttggttgt 16870693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 498 - 567
Target Start/End: Original strand, 54147589 - 54147658
Alignment:
Q  498 gtgagtcaacataatgctcacaattggtttgtttgtttggtgggtcaagtgctcacaatttgcttgtttg 567  Q
    ||||||||| ||| | ||||||||||||||||||||||||| |||||||||||||| ||| | |||||||    
T  54147589 gtgagtcaagatagtcctcacaattggtttgtttgtttggtaggtcaagtgctcactattggattgtttg 54147658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 525 - 595
Target Start/End: Original strand, 54147682 - 54147752
Alignment:
Q  525 tttgtttgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggttgt 595  Q
    ||||||||||||||| |||| ||||||||| |||  |||||||||||||| | |||||||| |||||||||    
T  54147682 tttgtttgtttggtgagtcaggtgctcacactttagttgtttggtgagtctagttctcacattttggttgt 54147752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 508 - 571
Target Start/End: Original strand, 24225457 - 24225524
Alignment:
Q  508 ataatgctcacaattggtttgtttgt----ttggtgggtcaagtgctcacaatttgcttgtttggtga 571  Q
    |||||||||||||||||||| |||||    ||||||  |||||| ||||||||||| |||||||||||    
T  24225457 ataatgctcacaattggtttatttgttttgttggtgactcaagtactcacaatttggttgtttggtga 24225524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 524 - 592
Target Start/End: Original strand, 42265425 - 42265492
Alignment:
Q  524 gtttgtttgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggt 592  Q
    ||||| |||||||||| ||| ||| ||||||||||| ||||||||||| |||| | |||||| ||||||    
T  42265425 gtttggttgtttggtgagtcgagt-ctcacaatttggttgtttggtgattcaagtgctcacaatttggt 42265492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 6e-20; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 500 - 594
Target Start/End: Original strand, 21813794 - 21813888
Alignment:
Q  500 gagtcaacataatgctcacaattggtttgtttgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggttg 594  Q
    ||||||| ||| | |||||||||||||| ||||||||||| |||||||||||||| |||| |||||||||||||| | | |||||| ||||||||    
T  21813794 gagtcaagatattcctcacaattggtttatttgtttggtgagtcaagtgctcacactttggttgtttggtgagtcgagtgctcacaatttggttg 21813888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 525 - 595
Target Start/End: Complemental strand, 46963918 - 46963848
Alignment:
Q  525 tttgtttgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggttgt 595  Q
    ||||||||||||||||||||||  |||| ||||||||||||||||||||| | ||||||||||||||||||    
T  46963918 tttgtttgtttggtgggtcaagaactcataatttgcttgtttggtgagtcgatttctcacactttggttgt 46963848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 515 - 590
Target Start/End: Complemental strand, 24487162 - 24487088
Alignment:
Q  515 tcacaattggtttgtttgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttg 590  Q
    |||||||| |||||||||||||||| || ||||| |||||||||| |||||||||||||||| |||||||| ||||    
T  24487162 tcacaatttgtttgtttgtttggtgagt-aagtgttcacaatttggttgtttggtgagtcaagttctcacaatttg 24487088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 498 - 595
Target Start/End: Original strand, 44338226 - 44338326
Alignment:
Q  498 gtgagtcaacataatgctcacaattggtttgtt----tgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggtt 593  Q
    ||||||||| ||| ||||||||||| |||||||    |||||||||||||| |  |||| ||||||||||||||||||||| | |||||||| |||||||    
T  44338226 gtgagtcaaaatagtgctcacaattagtttgttcgtttgtttggtgggtca-gcactcataatttgcttgtttggtgagtcgagttctcacattttggtt 44338324  T
Q  594 gt 595  Q
    ||    
T  44338325 gt 44338326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 525 - 595
Target Start/End: Complemental strand, 11828677 - 11828607
Alignment:
Q  525 tttgtttgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggttgt 595  Q
    |||||| |||||||||||||||||||||||||||| |||| |||||||||   | |||||| |||||||||    
T  11828677 tttgttagtttggtgggtcaagtgctcacaatttggttgtctggtgagtcgggtgctcacattttggttgt 11828607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 498 - 571
Target Start/End: Original strand, 6530574 - 6530647
Alignment:
Q  498 gtgagtcaacataatgctcacaattggtttgtttgtttggtgggtcaagtgctcacaatttgcttgtttggtga 571  Q
    ||||||||| ||| |  ||||||||||||||| ||||||||| ||||| || |||||||||| |||||||||||    
T  6530574 gtgagtcaagatagtattcacaattggtttgtctgtttggtgagtcaaatgttcacaatttggttgtttggtga 6530647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 525 - 595
Target Start/End: Original strand, 8986185 - 8986255
Alignment:
Q  525 tttgtttgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggttgt 595  Q
    ||||||||||||||||||||||  |||| ||||||||||||||||||||| | ||||||||||||||||||    
T  8986185 tttgtttgtttggtgggtcaagaactcataatttgcttgtttggtgagtcgatttctcacactttggttgt 8986255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 512 - 574
Target Start/End: Original strand, 32290583 - 32290645
Alignment:
Q  512 tgctcacaattggtttgtttgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtc 574  Q
    ||||||||||| | || ||| ||||||||||||||||||||||||||| ||||||||||||||    
T  32290583 tgctcacaatttggttatttttttggtgggtcaagtgctcacaatttggttgtttggtgagtc 32290645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 512 - 595
Target Start/End: Complemental strand, 38584217 - 38584134
Alignment:
Q  512 tgctcacaattggtttgtttgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggttgt 595  Q
    |||||||| || | ||||||| |||||| ||||||||||||||||||| | ||||||||||| || | |||||| |||||||||    
T  38584217 tgctcacattttggttgtttggttggtgagtcaagtgctcacaatttggtagtttggtgagttaagtgctcacaatttggttgt 38584134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 525 - 595
Target Start/End: Complemental strand, 1173651 - 1173581
Alignment:
Q  525 tttgtttgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggttgt 595  Q
    ||||||||||||||||||| |||||||| |||||| |||||||||||||| | | |||| | |||||||||    
T  1173651 tttgtttgtttggtgggtcgagtgctcataatttgtttgtttggtgagtcgagtactcatattttggttgt 1173581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 524 - 570
Target Start/End: Complemental strand, 1173683 - 1173637
Alignment:
Q  524 gtttgtttgtttggtgggtcaagtgctcacaatttgcttgtttggtg 570  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||    
T  1173683 gtttgtttgtttggtgggtcaagtgctcataatttgtttgtttggtg 1173637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 498 - 595
Target Start/End: Complemental strand, 38584301 - 38584200
Alignment:
Q  498 gtgagtcaacataatgctcacaatt-ggtttgtt----tgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggt 592  Q
    ||||||||| ||| ||||||||||| ||||||||    |||||||||||| |||  |||||||||||||||||||||||||| | | |||||| ||||||    
T  38584301 gtgagtcaaaatagtgctcacaatttggtttgttcgtttgtttggtgggt-aagcactcacaatttgcttgtttggtgagtcgagtgctcacattttggt 38584203  T
Q  593 tgt 595  Q
    |||    
T  38584202 tgt 38584200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 525 - 559
Target Start/End: Original strand, 32290561 - 32290595
Alignment:
Q  525 tttgtttgtttggtgggtcaagtgctcacaatttg 559  Q
    |||||||||||||||||||||||||||||||||||    
T  32290561 tttgtttgtttggtgggtcaagtgctcacaatttg 32290595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 532 - 590
Target Start/End: Complemental strand, 38584166 - 38584108
Alignment:
Q  532 gtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttg 590  Q
    |||||||| || |||||||||||||||| ||||||||||||| |||| |||||| ||||    
T  38584166 gtttggtgagttaagtgctcacaatttggttgtttggtgagttaaatgctcacaatttg 38584108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 498 - 595
Target Start/End: Complemental strand, 19825215 - 19825115
Alignment:
Q  498 gtgagtcaacataatgctcacaattggtttgtttgtttggtgggt---caagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggttg 594  Q
    ||||||||| ||||||||||||||| ||||||||||||||| |||    |||||||||||||||| |||||||| ||||| | | |||||| ||||||||    
T  19825215 gtgagtcaagataatgctcacaatttgtttgtttgtttggttggtgagtaagtgctcacaatttggttgtttggcgagtcgagtgctcacaatttggttg 19825116  T
Q  595 t 595  Q
    |    
T  19825115 t 19825115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 529 - 593
Target Start/End: Complemental strand, 15630108 - 15630044
Alignment:
Q  529 tttgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggtt 593  Q
    ||||||||||| ||| |||||||||| |||| |||||||||||||| | | |||||| |||||||    
T  15630108 tttgtttggtgagtcgagtgctcacactttggttgtttggtgagtcgagtgctcacaatttggtt 15630044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 525 - 573
Target Start/End: Complemental strand, 19825154 - 19825106
Alignment:
Q  525 tttgtttgtttggtgggtcaagtgctcacaatttgcttgtttggtgagt 573  Q
    |||| |||||||| | ||| ||||||||||||||| |||||||||||||    
T  19825154 tttggttgtttggcgagtcgagtgctcacaatttggttgtttggtgagt 19825106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 516 - 595
Target Start/End: Original strand, 50295517 - 50295596
Alignment:
Q  516 cacaattggtttgtttgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggttgt 595  Q
    ||||||| | |||||||||| ||||||||||||||||||||||| |||||| ||||||| | | ||||||||| ||||||    
T  50295517 cacaatttgattgtttgtttagtgggtcaagtgctcacaatttggttgtttcgtgagtcgagtgctcacacttgggttgt 50295596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 525 - 570
Target Start/End: Complemental strand, 2593589 - 2593544
Alignment:
Q  525 tttgtttgtttggtgggtcaagtgctcacaatttgcttgtttggtg 570  Q
    |||||||||||| || ||||||||||||||||||| || |||||||    
T  2593589 tttgtttgtttgatgagtcaagtgctcacaatttgtttctttggtg 2593544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 554 - 595
Target Start/End: Original strand, 42530734 - 42530775
Alignment:
Q  554 aatttgcttgtttggtgagtcaaattctcacactttggttgt 595  Q
    |||||| |||||||||||||| | ||||||||||||||||||    
T  42530734 aatttggttgtttggtgagtcgagttctcacactttggttgt 42530775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 549 - 585
Target Start/End: Complemental strand, 46692141 - 46692105
Alignment:
Q  549 ctcacaatttgcttgtttggtgagtcaaattctcaca 585  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  46692141 ctcacaatttggttgtttggtgagtctaattctcaca 46692105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 347 - 383
Target Start/End: Original strand, 50295343 - 50295379
Alignment:
Q  347 atgtttgtctatgcttgctttggttcagcttgtcttg 383  Q
    |||| |||||||| |||||||||||||||||||||||    
T  50295343 atgtctgtctatggttgctttggttcagcttgtcttg 50295379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 498 - 595
Target Start/End: Original strand, 20241903 - 20242003
Alignment:
Q  498 gtgagtcaacataatgctcacaattggtttgtt----tgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggtt 593  Q
    ||||||||| ||| ||||||||||| |||||||    |||||||||||||| |  |||| ||||||||||||||||||||| | |||||||| |||||||    
T  20241903 gtgagtcaaaatagtgctcacaattagtttgttcgtttgtttggtgggtca-gcactcataatttgcttgtttggtgagtcgagttctcacattttggtt 20242001  T
Q  594 gt 595  Q
    ||    
T  20242002 gt 20242003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 498 - 595
Target Start/End: Complemental strand, 20251164 - 20251064
Alignment:
Q  498 gtgagtcaacataatgctcacaattggtttgtt----tgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggtt 593  Q
    ||||||||| ||| ||||||||||| |||||||    |||||||||||||| |  |||| ||||||||||||||||||||| | |||||||| |||||||    
T  20251164 gtgagtcaaaatagtgctcacaattagtttgttcgtttgtttggtgggtca-gcactcataatttgcttgtttggtgagtcgagttctcacattttggtt 20251066  T
Q  594 gt 595  Q
    ||    
T  20251065 gt 20251064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 515 - 574
Target Start/End: Complemental strand, 155004 - 154941
Alignment:
Q  515 tcacaattggtttgtttgtttggtggg----tcaagtgctcacaatttgcttgtttggtgagtc 574  Q
    |||||||||||||||||||||||| ||    |||| | ||||||||||| ||||||||||||||    
T  155004 tcacaattggtttgtttgtttggttggtaaatcaaattctcacaatttggttgtttggtgagtc 154941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 574
Target Start/End: Complemental strand, 7378 - 7316
Alignment:
Q  515 tcacaattggtttgtttgtttggtgggt---caagtgctcacaatttgcttgtttggtgagtc 574  Q
    ||||||||||||||||| |||||| |||   ||| ||||||||| ||| ||||||||||||||    
T  7378 tcacaattggtttgtttctttggttggtgatcaaatgctcacaaattggttgtttggtgagtc 7316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University