View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20928_low_3 (Length: 447)
Name: NF20928_low_3
Description: NF20928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20928_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 17 - 444
Target Start/End: Original strand, 33790772 - 33791189
Alignment:
| Q |
17 |
aagtataactcgttcggtcttttatttcacaatgaataatggtgaccacatcaattgcatattcatcataatttttaggaagctgcatatttatcttact |
116 |
Q |
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| T |
33790772 |
aagtataactcgttcggtcttttatttcacaatgaataatggtgaccacatcaattgcatatt----------tttaggcagctgcatatttatcttact |
33790861 |
T |
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| Q |
117 |
ctacacatatacttaccaaaatataaaatattttgtcatgaccaatttggttgatttaatttcaggggtgtgacgcatccatattaatagactcaaagaa |
216 |
Q |
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| T |
33790862 |
ctacacatatacttaccaaaatatacaatattttgtcatgaccaatttggttgatttaatttcaggggtgtgacgcatccatattaatagactcaaagaa |
33790961 |
T |
|
| Q |
217 |
gggcaatgaatcagagaaagcagcaagagcaaaccttactgtaagaggatataacctcatagatgaaatcaaaagaatcctagaaaatgcatgtccatca |
316 |
Q |
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| T |
33790962 |
gggcaatgaatcagagaaagcagcaagagcaaaccttactgtaagaggatataacctcatagatgaaatcaaaagaatcctagaaaatgcatgtccatca |
33791061 |
T |
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| Q |
317 |
acagtttcatgtgcagacataatatcattagcaacaagagattcagttgtcttagcaggtggaccaagttacaatgttcctacaggaagacgtgatggat |
416 |
Q |
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| T |
33791062 |
acagtttcatgtgcagacataatatcattagcaacaagagattctgttgtcttagcaggtggaccaagttacaatgttcctacaggaagacgtgatggat |
33791161 |
T |
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| Q |
417 |
tagtatcaactgttgatgatgtccatct |
444 |
Q |
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| T |
33791162 |
tagtatcaactgttaatgatgtacatct |
33791189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 304 - 418
Target Start/End: Complemental strand, 33764212 - 33764098
Alignment:
| Q |
304 |
tgcatgtccatcaacagtttcatgtgcagacataatatcattagcaacaagagattcagttgtcttagcaggtggaccaagttacaatgttcctacagga |
403 |
Q |
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| T |
33764212 |
tgcatgtccatcaacggtttcatgtgcagacatcgtagcacttgctacaagagatgctgtggccttatctggaggaccaaaatacaatattcctacagga |
33764113 |
T |
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| Q |
404 |
agacgtgatggatta |
418 |
Q |
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| T |
33764112 |
agacgtgacggatta |
33764098 |
T |
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