View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20928_low_5 (Length: 385)

Name: NF20928_low_5
Description: NF20928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20928_low_5
NF20928_low_5
[»] chr6 (1 HSPs)
chr6 (15-382)||(28612106-28612475)
[»] chr3 (8 HSPs)
chr3 (34-385)||(52653558-52653910)
chr3 (28-241)||(40574287-40574499)
chr3 (37-208)||(33709792-33709963)
chr3 (297-385)||(50914652-50914741)
chr3 (58-211)||(31362247-31362400)
chr3 (62-114)||(23686089-23686141)
chr3 (62-114)||(24058326-24058378)
chr3 (231-285)||(33709698-33709752)
[»] chr8 (3 HSPs)
chr8 (34-385)||(12729175-12729527)
chr8 (184-385)||(28696212-28696416)
chr8 (34-114)||(44729133-44729214)
[»] chr1 (8 HSPs)
chr1 (34-330)||(49053630-49053930)
chr1 (35-330)||(49061210-49061509)
chr1 (58-207)||(42263434-42263583)
chr1 (58-211)||(50059453-50059606)
chr1 (57-208)||(52282015-52282168)
chr1 (139-213)||(10917477-10917551)
chr1 (343-385)||(49053589-49053631)
chr1 (80-172)||(17458409-17458501)
[»] chr7 (8 HSPs)
chr7 (20-385)||(12239589-12239955)
chr7 (57-293)||(34091475-34091713)
chr7 (83-203)||(24870385-24870505)
chr7 (232-385)||(1840437-1840589)
chr7 (126-208)||(24871395-24871477)
chr7 (255-293)||(33988783-33988821)
chr7 (160-213)||(30108293-30108346)
chr7 (58-178)||(20463987-20464107)
[»] chr4 (10 HSPs)
chr4 (139-384)||(24129428-24129674)
chr4 (20-365)||(48779825-48780174)
chr4 (231-385)||(1494951-1495105)
chr4 (57-385)||(20251181-20251523)
chr4 (262-385)||(1516541-1516663)
chr4 (34-175)||(24391830-24391970)
chr4 (262-330)||(1533067-1533135)
chr4 (326-385)||(122863-122922)
chr4 (174-219)||(46324440-46324485)
chr4 (156-247)||(27538195-27538287)
[»] chr5 (7 HSPs)
chr5 (20-350)||(9851409-9851740)
chr5 (231-385)||(36202900-36203054)
chr5 (34-208)||(29006447-29006622)
chr5 (233-336)||(29006305-29006408)
chr5 (52-211)||(36203051-36203209)
chr5 (262-379)||(11042984-11043101)
chr5 (295-351)||(15205185-15205241)
[»] chr2 (3 HSPs)
chr2 (20-385)||(14218851-14219218)
chr2 (69-385)||(34681118-34681432)
chr2 (164-224)||(17862390-17862450)
[»] scaffold0007 (1 HSPs)
scaffold0007 (58-385)||(217544-217861)


Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 15 - 382
Target Start/End: Original strand, 28612106 - 28612475
Alignment:
Q  15 tatgtaaaagggtatatcagcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtac 113  Q
    ||||||||| |||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||    
T  28612106 tatgtaaaatggtatatcggcgaatccccttcagaatacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcaatggtagtatac 28612205  T
Q  114 aaaacaatgttctgtcaattcccctcgtgcactagagataaaaaagaatgatttagtataatttttgacagaatttcgactcacaagaatgtgattttgt 213  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  28612206 aaaacaatgttctgtcaattcccctcgtgcactagagataagaaagaatgatttagtataattttcggcagaatttcgactcacaagaatgtgattttgt 28612305  T
Q  214 ctcta-ttttctgaatacttttctgcctccaaagtgtctatctttatgaagaaacttatgtcatttgatgaagaaaaacaatcatttggaagagtttgtt 312  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28612306 ctctatttttctgaatacttttctgcctcgaaagtgtctatctttataaagaaacttatgtcatttggtgaagaaaaacaatcatttggaagagtttgtt 28612405  T
Q  313 catgaattgttatattgcttcaattgtcaagcaatacacctttgctctaaaaggtctctatttaaccatt 382  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  28612406 catgaattgttatattgcttcaattgtcaaacaatacacctttgctctaaaaggcctctatttaaccatt 28612475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 134; Significance: 1e-69; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 34 - 385
Target Start/End: Complemental strand, 52653910 - 52653558
Alignment:
Q  34 gcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaat 132  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||  |||||  || ||||||| |||| || || |||||||||||    
T  52653910 gcgaatccccttcaggatacaatggaatccttgacgtgacttgcacattcacatcaagtgtatcga-caatggtagtttacagaataaagttctgtcaat 52653812  T
Q  133 tcccctcgtgcactagagataaaaaagaatgatttagtataatttttgacagaatttcgactcacaagaatgtgattttgtctctatttt-ctgaatact 231  Q
    |  |||||||||||||||| ||  ||||||||||||||||||||||   ||||||||  |||||||| ||||| ||||| | || || || |||||| ||    
T  52653811 tttcctcgtgcactagagaaaagtaagaatgatttagtataattttcagcagaatttaaactcacaacaatgtaattttctgtcgatattactgaattct 52653712  T
Q  232 tttctgcctccaaagtgtctatctttatgaagaaacttatgtcatttgatgaagaaaaacaatcatttggaagagtttgttcatgaattgttatattgct 331  Q
    |||||||||||||||||||| | | |||  |||||||| |||| |||| |||||| | |||| |||||  |||||||||||||||||| |||| |||||     
T  52653711 tttctgcctccaaagtgtctttgtctatagagaaacttgtgtcctttggtgaagagacacaaccatttaaaagagtttgttcatgaatggttacattgca 52653612  T
Q  332 tcaattgtcaagcaatacacctttgctctaaaaggtctctatttaaccattgca 385  Q
    ||||||||||| |||||||||||| | ||||||||| | ||||||| |||||||    
T  52653611 tcaattgtcaaacaatacaccttttcactaaaaggtatttatttaatcattgca 52653558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 28 - 241
Target Start/End: Original strand, 40574287 - 40574499
Alignment:
Q  28 atatcagcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttct 126  Q
    ||||||||||||  |||||||| ||| |||||||| ||||||||||||| |||||||||| |||| ||||  ||| || |||| |||| || || |||||    
T  40574287 atatcagcgaattaccttcaggatactatggaatctttgacgtgacttgcacattcacacgaagcgtatcaatcaatgatagtttacagaataaagttct 40574386  T
Q  127 gtcaattcccctcgtgcactagagataaaaaagaatgatttagtataatttttgacagaatttcgactcacaagaatgtgattttgtctctattttctga 226  Q
    ||||||| | ||||||||||||||| || ||||||||||||| ||| ||||| | |||||||| ||||||||||||||||||||||| ||  ||| ||||    
T  40574387 gtcaatttctctcgtgcactagagaaaagaaagaatgatttaatattattttcggcagaattttgactcacaagaatgtgattttgtgtc--tttcctga 40574484  T
Q  227 atacttttctgcctc 241  Q
     || |||||||||||    
T  40574485 ctaattttctgcctc 40574499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 37 - 208
Target Start/End: Complemental strand, 33709963 - 33709792
Alignment:
Q  37 aatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcc 135  Q
    ||||||||| ||| ||| || ||||||||||||||||||| ||||||||||||||| |||||  || ||||||| |||| || || |||||||||| | |    
T  33709963 aatcccctttaggatacgatagaatccttgacgtgacttgcacattcacaccaagcgtatcga-caatggtagtttacagaataaagttctgtcaaattc 33709865  T
Q  136 cctcgtgcactagagataaaaaagaatgatttagtataatttttgacagaatttcgactcacaagaatgtgat 208  Q
     || |||||||||||| || ||||||||||||||||||||||| | || ||||| ||||||| ||||||||||    
T  33709864 tctggtgcactagagaaaagaaagaatgatttagtataattttcggcaaaatttagactcaccagaatgtgat 33709792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 297 - 385
Target Start/End: Original strand, 50914652 - 50914741
Alignment:
Q  297 tttggaagagtttgtt-catgaattgttatattgcttcaattgtcaagcaatacacctttgctctaaaaggtctctatttaaccattgca 385  Q
    |||||||||||||||| ||||||| |||  |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  50914652 tttggaagagtttgtttcatgaatggttgcattgcttcaattgtcaagcattacacctttactctaaaaggtctctatttaaccattgca 50914741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 58 - 211
Target Start/End: Original strand, 31362247 - 31362400
Alignment:
Q  58 aatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaa 157  Q
    |||||||||||  |||| |||||||||||||| | ||||| ||  | ||||| ||||||| || ||||||||||||  |||||||||||| | | || ||    
T  31362247 aatccttgacggaacttatacattcacaccaaacgtatcgatcgatagtagtttacaaaataaagttctgtcaattttcctcgtgcactaaaaaaaataa 31362346  T
Q  158 agaatgatttagtataatttttgacagaatttcgactcacaagaatgtgatttt 211  Q
    | ||  ||||||||| ||||| |||||||||| |||||||||||||||||||||    
T  31362347 aaaaaaatttagtattattttcgacagaattttgactcacaagaatgtgatttt 31362400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 23686141 - 23686089
Alignment:
Q  62 cttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtaca 114  Q
    |||||||||| ||| ||||||||||||||||||||| ||||||||||| ||||    
T  23686141 cttgacgtgatttggacattcacaccaagcatatcgatcattggtagtttaca 23686089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 24058378 - 24058326
Alignment:
Q  62 cttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtaca 114  Q
    |||||||||| ||| ||||||||||||||||||||| ||||||||||| ||||    
T  24058378 cttgacgtgatttggacattcacaccaagcatatcgatcattggtagtttaca 24058326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 285
Target Start/End: Complemental strand, 33709752 - 33709698
Alignment:
Q  231 ttttctgcctccaaagtgtctatctttatgaagaaacttatgtcatttgatgaag 285  Q
    ||||||||||||||||||||| | |||||  ||||||||||||| |||| |||||    
T  33709752 ttttctgcctccaaagtgtctctatttatagagaaacttatgtcctttggtgaag 33709698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 126; Significance: 7e-65; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 34 - 385
Target Start/End: Complemental strand, 12729527 - 12729175
Alignment:
Q  34 gcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaat 132  Q
    |||| ||||||||||| ||| ||| |||||||||| ||||||| |||||||||||||||||||||   |||| |||| |||  || || |||||||||||    
T  12729527 gcgattccccttcaggatacgatgaaatccttgacatgacttgcacattcacaccaagcatatcgacaattg-tagtttactgaataaagttctgtcaat 12729429  T
Q  133 tcccctcgtgcactagagataaaaaagaatgatttagtataatttttgacagaatttcgactcacaagaatgtgattttgtctctat-tttctgaatact 231  Q
    | | ||||||||||||||| || ||||||| ||||||||||||||| | |||||||| ||| ||||| ||||||||||| | ||||| ||| ||| | ||    
T  12729428 ttctctcgtgcactagagaaaagaaagaattatttagtataattttcggcagaattttgacacacaacaatgtgattttctgtctatatttttgacttct 12729329  T
Q  232 tttctgcctccaaagtgtctatctttatgaagaaacttatgtcatttgatgaagaaaaacaatcatttggaagagtttgttcatgaattgttatattgct 331  Q
    |||||||||||| | ||  | | ||||   ||||| ||||||| | || |||||| ||||||   ||| |||||||||| |||||||| |||||||||||    
T  12729328 tttctgcctccataatgcatctatttacagagaaatttatgtcctgtggtgaagagaaacaactctttagaagagtttgctcatgaatggttatattgct 12729229  T
Q  332 tcaattgtcaagcaatacacctttgctctaaaaggtctctatttaaccattgca 385  Q
    ||||||||| |||| ||||||||| |||||||||||||||||||||||||||||    
T  12729228 tcaattgtcgagcattacaccttttctctaaaaggtctctatttaaccattgca 12729175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 184 - 385
Target Start/End: Original strand, 28696212 - 28696416
Alignment:
Q  184 gaatttcgactcacaagaatgtgat--tttgtctctattt-tctgaatacttttctgcctccaaagtgtctatctttatgaagaaacttatgtcatttga 280  Q
    |||||| ||||||||||||||||||  ||| ||||| ||| ||| |||  |||||||| |||||||||||| | |||||| ||||||||||||  ||||     
T  28696212 gaatttagactcacaagaatgtgatactttatctctttttctctcaatcattttctgcatccaaagtgtctctatttatggagaaacttatgttctttgg 28696311  T
Q  281 tgaagaaaaacaatcatttggaagagtttgttcatgaattgttatattgcttcaattgtcaagcaatacacctttgctctaaaaggtctctatttaacca 380  Q
    |||||| |||||  | ||| ||||||||||||||||||| |||| |||||||||||||| ||||| ||||| ||| ||||||||| |||||||||| |||    
T  28696312 tgaagagaaacatccctttagaagagtttgttcatgaatggttacattgcttcaattgttaagcattacacattttctctaaaagatctctatttaccca 28696411  T
Q  381 ttgca 385  Q
    |||||    
T  28696412 ttgca 28696416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 114
Target Start/End: Complemental strand, 44729214 - 44729133
Alignment:
Q  34 gcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtaca 114  Q
    |||||||||||| ||| |||| ||||||||||||||||||||| ||||||| ||||||| ||||| ||| || |||| ||||    
T  44729214 gcgaatcccctttaggatacattggaatccttgacgtgacttgcacattcataccaagcgtatcgatcaatgatagtttaca 44729133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 123; Significance: 4e-63; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 34 - 330
Target Start/End: Complemental strand, 49053930 - 49053630
Alignment:
Q  34 gcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaat 132  Q
    |||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||  || ||||||| ||||||| || |||||| ||||    
T  49053930 gcgaatccccttcaggatacaatgaaatccttgacgtgacttgcacattcacaccaagcatatcga-caatggtagtttacaaaataaagttctgccaat 49053832  T
Q  133 tcccctcgtgcactagagataaaaaagaatgatttagtataat-ttttgacagaatttcgactcacaagaatgtgattt--tgtctcta-ttttctgaat 228  Q
    | |||||||||||||||||  | |||||||||||||||||||| ||||| |||||||  ||| ||||| ||||||||||  |||||||| ||||| ||||    
T  49053831 ttccctcgtgcactagagaagagaaagaatgatttagtataattttttggcagaattatgacacacaacaatgtgattttatgtctctatttttcagaat 49053732  T
Q  229 acttttctgcctccaaagtgtctatctttatgaagaaacttatgtcatttgatgaagaaaaacaatcatttggaagagtttgttcatgaattgttatatt 328  Q
     |||||||||| ||| | ||||||| |||||  | ||||||||||| |||| |||||| | ||||||||||| ||||||||||| |||||| |||| |||    
T  49053731 tcttttctgccaccataatgtctatatttatataaaaacttatgtcctttggtgaagagacacaatcatttgaaagagtttgtttatgaatggttacatt 49053632  T
Q  329 gc 330  Q
    ||    
T  49053631 gc 49053630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 35 - 330
Target Start/End: Complemental strand, 49061509 - 49061210
Alignment:
Q  35 cgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaatt 133  Q
    ||||||||||||||  |||||||||||||||||||||| ||| ||||||||||||| |||||||  || ||||||| |||| || || ||| ||||||||    
T  49061509 cgaatccccttcagaatacaatggaatccttgacgtgatttgcacattcacaccaaacatatcga-caatggtagtttacagaataaagttttgtcaatt 49061411  T
Q  134 cccctcgtgcactagagataaaaaagaatgatttagtataattttt-gacagaatttcgactcacaagaatgtgattt--tgtctcta-ttttctgaata 229  Q
     ||||||||||||||||| || |||||||||||||||||||||||| | |||||||  ||| ||||| ||||||||||  |||||||| ||||||||||     
T  49061410 tccctcgtgcactagagaaaagaaagaatgatttagtataatttttcggcagaattatgacacacaacaatgtgattttatgtctctatttttctgaatt 49061311  T
Q  230 cttttctgcctccaaagtgtctatctttatgaagaaacttatgtcatttgatgaagaaaaacaatcatttggaagagtttgttcatgaattgttatattg 329  Q
    |||||||||| | | | ||||| | |||||  ||||||||||||| |||  |||||| | ||||| ||||| |||| |||||| |||||| |||| ||||    
T  49061310 cttttctgccactataatgtctctatttatatagaaacttatgtcctttcgtgaagagacacaattatttgaaagaatttgtttatgaatggttacattg 49061211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 58 - 207
Target Start/End: Original strand, 42263434 - 42263583
Alignment:
Q  58 aatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaa 157  Q
    |||| ||||| ||||||| ||||||| || |||| |||||  || || || | |||||||||| ||| |||| ||| | ||||||||||||||| || ||    
T  42263434 aatctttgacatgacttgcacattcatactaagcgtatcgaacaatgttaatttacaaaacaaagttttgtcgatttctctcgtgcactagagaaaagaa 42263533  T
Q  158 agaatgatttagtataatttttgacagaatttcgactcacaagaatgtga 207  Q
    |||||||| |||||| ||||| | ||| |||| |||||||||||||||||    
T  42263534 agaatgatatagtattattttaggcagtattttgactcacaagaatgtga 42263583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 58 - 211
Target Start/End: Complemental strand, 50059606 - 50059453
Alignment:
Q  58 aatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaa 157  Q
    |||||| |||||||||| || ||||||| | | | ||||| ||| || |||| || | || || ||||||| |||| | ||||||||||||||| || ||    
T  50059606 aatcctggacgtgacttataaattcacatccaacgtatcgatcaatgatagtttatagaataaagttctgtaaatttctctcgtgcactagagaaaataa 50059507  T
Q  158 agaatgatttagtataatttttgacagaatttcgactcacaagaatgtgatttt 211  Q
    ||||||||| ||||| |||||| ||||||||| || ||||||||||||| ||||    
T  50059506 agaatgattcagtattattttttacagaattttgattcacaagaatgtgttttt 50059453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 208
Target Start/End: Original strand, 52282015 - 52282168
Alignment:
Q  57 gaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaatt--cccctcgtgcactagagataa 154  Q
    ||||| ||||| ||||||| | |||||||||||||  |||| ||| ||||||| |||| || || ||| ||||||||   | ||| ||||||||||| ||    
T  52282015 gaatctttgacatgacttgcatattcacaccaagcgcatcgatcaatggtagtttacagaataaagttatgtcaatttctctctcatgcactagagaaaa 52282114  T
Q  155 aaaagaatgatttagtataatttttgacagaatttcgactcacaagaatgtgat 208  Q
     ||||||||||||| ||| |||||  | |||||||  ||||| || ||||||||    
T  52282115 gaaagaatgatttaatattattttcaatagaatttaaactcataaaaatgtgat 52282168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 10917551 - 10917477
Alignment:
Q  139 cgtgcactagagataaaaaagaatgatttagtataatttttgacagaatttcgactcacaagaatgtgattttgt 213  Q
    ||||||||||||| || ||  |||||||| |||| ||||| | ||||| || |||| ||||||||||||||||||    
T  10917551 cgtgcactagagaaaagaagaaatgattttgtattattttcggcagaactttgacttacaagaatgtgattttgt 10917477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 343 - 385
Target Start/End: Complemental strand, 49053631 - 49053589
Alignment:
Q  343 gcaatacacctttgctctaaaaggtctctatttaaccattgca 385  Q
    ||||||||||||| | ||||||||||| |||||||||||||||    
T  49053631 gcaatacaccttttcactaaaaggtctttatttaaccattgca 49053589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 172
Target Start/End: Complemental strand, 17458501 - 17458409
Alignment:
Q  80 ttcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaaagaatgatttagtat 172  Q
    |||| ||||||| ||||| ||| || |||| ||||||| || ||| | || ||||  ||||||||||||||| |  |||||||||||||||||    
T  17458501 ttcaaaccaagcgtatcgatcaatgatagtttacaaaataaagttatctctattcatctcgtgcactagagaaatgaaagaatgatttagtat 17458409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 6e-59; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 20 - 385
Target Start/End: Original strand, 12239589 - 12239955
Alignment:
Q  20 aaaagggtatatcagcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaac 118  Q
    |||||||||| || |||||||||||||||| ||| ||| |||||||||||||||||| ||||||||||||||| |||||  || ||||||| | || ||     
T  12239589 aaaagggtatgtcggcgaatccccttcaggatacgatgaaatccttgacgtgacttgcacattcacaccaagcgtatcga-caatggtagtttccagaat 12239687  T
Q  119 aatgttctgtcaattcccctcgtgcactagagataaaaaagaatgatttagtataatttttgacagaatttcgactcacaagaatgtgattttgtctcta 218  Q
    || ||| ||||||||   || ||  ||||||||||| ||||||| ||||| ||| ||||| | |||||||   || ||||| ||||||||||| | ||||    
T  12239688 aaagttttgtcaatttatctagtatactagagataagaaagaataatttaatattattttcggcagaattctaacacacaacaatgtgattttctatcta 12239787  T
Q  219 t-tttctgaatacttttctgcctccaaagtgtctatctttatgaagaaacttatgtcatttgatgaagaaaaacaatcatttggaagagtttgttcatga 317  Q
    | ||||| ||| ||||||| |||||||||||||| | |||||  |||||||||| || |||||| ||||    ||| |||||| ||||||||||||||||    
T  12239788 tatttcttaattcttttctacctccaaagtgtctttatttatagagaaacttatatcctttgatcaagagccgcaaccatttgaaagagtttgttcatga 12239887  T
Q  318 attgttatattgcttcaattgtcaagcaatacacctttgctctaaaaggtctctatttaaccattgca 385  Q
    || |||| ||||| |||||||||||||||||||| ||| | ||||||||||| | |||||||||||||    
T  12239888 atggttacattgcatcaattgtcaagcaatacactttttcactaaaaggtctttctttaaccattgca 12239955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 57 - 293
Target Start/End: Original strand, 34091475 - 34091713
Alignment:
Q  57 gaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaa 156  Q
    ||||||||||||||||||| ||||||||||||| | |||   | | ||||||| ||||||  || ||||| |||||| | ||| |||| |||||| || |    
T  34091475 gaatccttgacgtgacttgcacattcacaccaatcgtatgaattaatggtagtttacaaagtaaagttctctcaatttctctcatgcattagagaaaaga 34091574  T
Q  157 aagaatgatttagtataatttttgacagaatttcgactcacaagaatgtga-ttttgtctcta-ttttctgaatacttttctgcctccaaagtgtctatc 254  Q
    | |||||||||| ||| ||||| | | |||||| |||||| || ||||||| ||||||||||| ||||||||||| ||||||| |||  |||||||| |     
T  34091575 atgaatgatttaatattattttcggcggaattttgactcataataatgtgatttttgtctctatttttctgaatatttttctgtctctcaagtgtcttta 34091674  T
Q  255 tttatgaagaaacttatgtcatttgatgaagaaaaacaa 293  Q
    ||||| |||||| |||||   ||||||||| | ||||||    
T  34091675 tttataaagaaatttatgatctttgatgaacagaaacaa 34091713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 83 - 203
Target Start/End: Complemental strand, 24870505 - 24870385
Alignment:
Q  83 acaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaaagaatgatttagtataatttttgac 182  Q
    ||||||||| ||| | ||| || |||| |||| || || ||||| ||||||   ||||||||||||||| || ||||| | ||||||||| ||||||| |    
T  24870505 acaccaagcgtattgatcaatgatagtttacataataaagttctatcaatttttctcgtgcactagagaaaagaaagacttatttagtattatttttggc 24870406  T
Q  183 agaatttcgactcacaagaat 203  Q
    ||||||| | |||||||||||    
T  24870405 agaattttgtctcacaagaat 24870385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 385
Target Start/End: Complemental strand, 1840589 - 1840437
Alignment:
Q  232 tttctgcctccaaagtgtctatctttatgaagaaacttatgt-catttgatgaagaaaaacaatcatttggaagagtttgttcatgaattgttatattgc 330  Q
    |||||||||||||| ||||| | |||||  |||||||||||| | ||||||||||||| ||||   ||| ||||| ||||||||||||| |||| | | |    
T  1840589 tttctgcctccaaaatgtctctatttatagagaaacttatgtccttttgatgaagaaagacaactttttagaagaatttgttcatgaatggttacaatac 1840490  T
Q  331 ttcaattgtcaagcaatacacctttgctctaaaaggtctctatttaaccattgca 385  Q
    || |||| ||||| | |||||| ||   |||||||||||||  ||||||||||||    
T  1840489 ttgaattatcaagaattacaccatt-tactaaaaggtctct-cttaaccattgca 1840437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 208
Target Start/End: Complemental strand, 24871477 - 24871395
Alignment:
Q  126 tgtcaattcccctcgtgcactagagataaaaaagaatgatttagtataatttttgacagaatttcgactcacaagaatgtgat 208  Q
    |||||||||| ||||||||||  ||| || | ||||||||||| ||| ||||| | |||||||| ||||||||| ||||||||    
T  24871477 tgtcaattcctctcgtgcacttaagaaaagagagaatgatttaatattattttcggcagaattttgactcacaataatgtgat 24871395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 293
Target Start/End: Complemental strand, 33988821 - 33988783
Alignment:
Q  255 tttatgaagaaacttatgtcatttgatgaagaaaaacaa 293  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  33988821 tttataaagaaatttatgtcatttgatgaagaaaaacaa 33988783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 30108293 - 30108346
Alignment:
Q  160 aatgatttagtataatttttgacagaatttcgactcacaagaatgtgattttgt 213  Q
    ||||||||||||| ||||| | || ||| | |||||||||||||||||||||||    
T  30108293 aatgatttagtattattttcggcataatgttgactcacaagaatgtgattttgt 30108346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 178
Target Start/End: Complemental strand, 20464107 - 20463987
Alignment:
Q  58 aatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaa 157  Q
    ||||||| ||| |||||| ||||||||||||||||||||| ||| || | || |  |||| ||  ||||||||||| | ||||| || |||||  |  ||    
T  20464107 aatccttaacgagacttgcacattcacaccaagcatatcgatcaatgattgtttgtaaaataaatttctgtcaatttctctcgtacattagagtaagtaa 20464008  T
Q  158 agaatgatttagtataatttt 178  Q
    | ||||||||||||| |||||    
T  20464007 ataatgatttagtattatttt 20463987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 139 - 384
Target Start/End: Original strand, 24129428 - 24129674
Alignment:
Q  139 cgtgcactagagataaaaaagaatgatttagtataatttttgacagaatttcgactcacaagaatgtgattttgtctcta-ttttctgaatacttttctg 237  Q
    ||||||||||||| || |||||| |||||||||| ||||||||| |||||| ||||||||| |||||||| || | |||| |||||| | |  |||| ||    
T  24129428 cgtgcactagagaaaagaaagaaagatttagtattatttttgacggaatttagactcacaaaaatgtgatgttctatctaattttcttacttattttttg 24129527  T
Q  238 cctccaaagtgtctatctttatgaagaaacttatgtcatttgatgaagaaaaacaatcatttggaagagtttgttcatgaattgttatattgcttcaatt 337  Q
    |||||| ||||||| | |||||  |||||||||||||||||| | ||| |||| || ||||||||||||||||||||||||| |||| ||||||||||||    
T  24129528 cctccagagtgtctctatttatagagaaacttatgtcatttggttaaggaaaataaccatttggaagagtttgttcatgaatggttacattgcttcaatt 24129627  T
Q  338 gtcaagcaatacacctttgctctaaaaggtctctatttaaccattgc 384  Q
     ||||||||||||||||| ||| |||| | || ||||||||||||||    
T  24129628 atcaagcaatacacctttcctccaaaaagcctatatttaaccattgc 24129674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 20 - 365
Target Start/End: Original strand, 48779825 - 48780174
Alignment:
Q  20 aaaagggtatatcagcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaac 118  Q
    ||||||||||||| | |||||||||||||| ||| ||| |||| ||||||||||||| ||||||||||||||||||||  ||| || |||| || | ||     
T  48779825 aaaagggtatatcggtgaatccccttcaggatactatgaaatcattgacgtgacttgcacattcacaccaagcatatcaatcaatgatagtttagagaat 48779924  T
Q  119 aatgttctgtcaattcccctcgtgcactagagataaaaaagaatgatttagtataatttttgacagaatttcgactcacaagaatgtgattttgtctcta 218  Q
    || ||| ||||| ||    |||||||||||||| || || |||||||||| ||| ||||| || ||||||| || | ||||||||||||| || | |||     
T  48779925 aaagttatgtcagtttatgtcgtgcactagagaaaataatgaatgatttaatattattttcgatagaatttagaatgacaagaatgtgatgttctatctc 48780024  T
Q  219 ttt---tctgaatacttttctgcctccaaagtgtctatctttatgaagaaacttatgtcatttgatgaagaaaaacaatcatttggaagagtttgttcat 315  Q
    |||   | | |||  ||||||||||||||||| ||| | |||||  | ||||| | ||| |||| || ||| |||||| | ||   |||| ||| |||||    
T  48780025 tttttctttcaattattttctgcctccaaagtatctttatttatagataaactcaagtcttttggtgtagagaaacaacctttgaaaagaatttattcat 48780124  T
Q  316 gaattgttatattgcttcaattgtcaagcaatacacctttgctctaaaag 365  Q
    |||| |||||||||||||||||||||| || || |||||| |||||||||    
T  48780125 gaatagttatattgcttcaattgtcaaacattataccttttctctaaaag 48780174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 231 - 385
Target Start/End: Original strand, 1494951 - 1495105
Alignment:
Q  231 ttttctgcctccaaagtgtctatctttatgaagaaacttatgtcatttgatgaagaaaaacaatcatttggaagagttt-gttcatgaattgttatattg 329  Q
    |||| |||||||||| ||||| | |||||  |||||||||||||||||| ||||   |||||| | |||| |||| ||| |||||||||| |||||||||    
T  1494951 ttttatgcctccaaaatgtctctttttatagagaaacttatgtcatttggtgaacggaaacaaacctttgaaagaattttgttcatgaatggttatattg 1495050  T
Q  330 cttcaattgtcaagcaatacacctttgctctaaaaggtctctatttaaccattgca 385  Q
    |||||| ||| ||||  ||||||||| ||||||| ||||||| |||||||||||||    
T  1495051 cttcaactgtaaagctttacaccttttctctaaatggtctct-tttaaccattgca 1495105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 57 - 385
Target Start/End: Complemental strand, 20251523 - 20251181
Alignment:
Q  57 gaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaa 156  Q
    ||||| |||| ||| |||||||||||||| ||||  ||||| ||| || |||| |||| || || |||||||||||| | ||||||||||| ||| || |    
T  20251523 gaatcattgatgtgccttgtacattcacatcaagtgtatcgatcaatgatagtttacataataaagttctgtcaatttctctcgtgcactacagaaaaga 20251424  T
Q  157 aagaatgatttagtataattttt-gacagaatttc-gactcacaagaatgtgattttgtctctatttt-------------ctgaatacttttctgcctc 241  Q
    || |||||||||||||  ||||| |||| |||||  ||| |||||||||||||| || | ||| ||||             |||| | ||||||||||||    
T  20251423 aataatgatttagtatttttttttgacataattttagacacacaagaatgtgatgttctatctctttttcttttattttttctgacttcttttctgcctc 20251324  T
Q  242 caaagtgtctatctttatgaagaaacttatgtcatttgatgaagaaaaacaatcatttggaagagtttgttcatgaattgttatattgcttcaattgtca 341  Q
     ||| | | | | |||||  ||||||||||||| |||| | |||||||||||  ||||   |||||| |||||||||| |||| |||| ||||||| |||    
T  20251323 aaaaatatttttatttatagagaaacttatgtcctttggtaaagaaaaacaactatttaagagagtt-gttcatgaatagttacattgtttcaattatca 20251225  T
Q  342 agcaatacacctttgctctaaaaggtctctatttaaccattgca 385  Q
    | |||||||| ||| ||||||||| |||||||||||| ||||||    
T  20251224 aacaatacactttttctctaaaagatctctatttaacaattgca 20251181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 262 - 385
Target Start/End: Original strand, 1516541 - 1516663
Alignment:
Q  262 agaaacttatgtcatttgatgaagaaaaacaatcatttggaagagtttgttcatgaattgttatattgcttcaattgtcaagcaatacacctttgctcta 361  Q
    |||||||||||||||||| ||||   ||| || | |||| |||| ||||||||||||| |||||||||| ||| || | ||||| ||||||||| |||||    
T  1516541 agaaacttatgtcatttggtgaacggaaataaccctttgaaagattttgttcatgaatggttatattgcgtcatttctaaagcactacaccttttctcta 1516640  T
Q  362 aaaggtctctatttaaccattgca 385  Q
    ||| |||||| |||||||||||||    
T  1516641 aaatgtctct-tttaaccattgca 1516663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 175
Target Start/End: Complemental strand, 24391970 - 24391830
Alignment:
Q  34 gcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaat 132  Q
    |||||||||||||| | ||||||||||||||||  |||||||| |||| |||||||| | |||||  || || |||| |||| || || ||| |||||||    
T  24391970 gcgaatccccttcaagatacaatggaatccttggtgtgacttgcacat-cacaccaaacgtatcga-caatgatagtttacagaataaagttatgtcaat 24391873  T
Q  133 tcccctcgtgcactagagataaaaaagaatgatttagtataat 175  Q
    | | ||| ||||||||||| || ||||||||||||||||||||    
T  24391872 ttctctcatgcactagagaaaagaaagaatgatttagtataat 24391830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 262 - 330
Target Start/End: Original strand, 1533067 - 1533135
Alignment:
Q  262 agaaacttatgtcatttgatgaagaaaaacaatcatttggaagagtttgttcatgaattgttatattgc 330  Q
    ||||||||||||||||||||||||  |||||| | |||| |||| ||||||||| ||| ||||||||||    
T  1533067 agaaacttatgtcatttgatgaagggaaacaaccctttgaaagattttgttcataaatggttatattgc 1533135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 326 - 385
Target Start/End: Complemental strand, 122922 - 122863
Alignment:
Q  326 attgcttcaattgtcaagcaatacacctttgctctaaaaggtctctatttaaccattgca 385  Q
    |||| ||||||||||||||||||||| ||| |||||||| || |||||||||| ||||||    
T  122922 attgtttcaattgtcaagcaatacacattttctctaaaatgtttctatttaactattgca 122863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 219
Target Start/End: Complemental strand, 46324485 - 46324440
Alignment:
Q  174 atttttgacagaatttcgactcacaagaatgtgattttgtctctat 219  Q
    ||||| || ||||||||||||||||||||||||||||||| |||||    
T  46324485 attttcgaaagaatttcgactcacaagaatgtgattttgtgtctat 46324440  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 247
Target Start/End: Original strand, 27538195 - 27538287
Alignment:
Q  156 aaagaatgatttagtataatttttgacagaatttcgactcacaagaatgtgattttgt--ctctattttctgaatacttttctgcctccaaagt 247  Q
    ||||||||||||||||| ||||| | ||||||||  || |||||||||||||| ||||   ||| |||||| |||  |||||||||||||||||    
T  27538195 aaagaatgatttagtattattttcggcagaattttcacccacaagaatgtgatgttgttgttct-ttttctaaatgattttctgcctccaaagt 27538287  T

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Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 20 - 350
Target Start/End: Original strand, 9851409 - 9851740
Alignment:
Q  20 aaaagggtatatcagcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaac 118  Q
    ||||||||||| | |||||||||||||| | ||| ||||||| ||| | |||| ||| ||||||||||||||| |||||  || ||||  | |||| ||     
T  9851409 aaaagggtataccggcgaatccccttcaagatacgatggaatacttaatgtgatttgcacattcacaccaagcgtatcga-caatggtgttttacagaat 9851507  T
Q  119 aatgttctgtcaattcccctcgtgcactagagataaaaaagaatgatttagtataatttttgacagaatttcgactcacaagaatgtgattttgtctcta 218  Q
    || ||| |||||  | | || |||||||||||| || ||||| ||||||||||| ||||||| |||||||| ||||||||| ||||||| ||| | || |    
T  9851508 aaagttttgtcacattctcttgtgcactagagaaaagaaagactgatttagtattatttttggcagaattttgactcacaataatgtgaatttctatcca 9851607  T
Q  219 t-tttctgaatacttttctgcctccaaagtgtctatctttatgaagaaacttatgtcatttgatgaagaaaaacaatcatttggaagagtttgttcatga 317  Q
    | ||||||| | |||||||||||||||| ||||| | ||||   ||||||||||||| |||| |||||| ||| || ||||||  |||||||||| ||||    
T  9851608 tgtttctgacttcttttctgcctccaaaatgtctctatttacagagaaacttatgtcttttggtgaagagaaataaccatttgacagagtttgtttatga 9851707  T
Q  318 attgttatattgcttcaattgtcaagcaataca 350  Q
    || || | |||||||||||||||||||||||||    
T  9851708 atggtcagattgcttcaattgtcaagcaataca 9851740  T

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Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 231 - 385
Target Start/End: Complemental strand, 36203054 - 36202900
Alignment:
Q  231 ttttctgcctccaaagtgtctatctttatgaagaaacttatgtcatttgatgaagaaaaacaatcatttggaagagtttgttcatgaattgttatattgc 330  Q
    ||||||| ||||||||||||| | |||||  |||||||||||||||||| |||||| ||| || | |||  |||||||||||||||||| |||| ||||     
T  36203054 ttttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatggttacattga 36202955  T
Q  331 ttcaattgtcaagcaatacacctttgctctaaaaggtctctatttaaccattgca 385  Q
    ||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||    
T  36202954 ttcaattgtcaagcattacaccttttctctaaaaggtctctttttaaccattgca 36202900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 34 - 208
Target Start/End: Complemental strand, 29006622 - 29006447
Alignment:
Q  34 gcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgt-acaaaacaatgttctgtcaa 131  Q
    |||||||| ||||||  |||||||||||||||||| |||| |  ||||||||||||||| |||||| || || |||| | ||| || || ||||||||||    
T  29006622 gcgaatcctcttcagaatacaatggaatccttgacatgacatacacattcacaccaagcgtatcgt-caatgttagttttacagaataaagttctgtcaa 29006524  T
Q  132 ttcccctcgtgcactagagataaaaaagaatgatttagtataatttttgacagaatttcgactcacaagaatgtgat 208  Q
     |   ||||||||||||| | || || |||||||||||||||||||||  |||||||| ||||||||||||||||||    
T  29006523 cttatctcgtgcactagaaaaaagaatgaatgatttagtataatttttagcagaatttagactcacaagaatgtgat 29006447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 336
Target Start/End: Complemental strand, 29006408 - 29006305
Alignment:
Q  233 ttctgcctccaaagtgtctatctttatgaagaaacttatgtcatttgatgaagaaaaacaatcatttggaagagtttgttcatgaattgttatattgctt 332  Q
    |||||| || ||||||||| | |||||  |||||||||||||||||| |||||  |||||| | |||  |||| ||||||||||||| |||| |||||||    
T  29006408 ttctgcttctaaagtgtctctatttatagagaaacttatgtcatttggtgaagggaaacaaccctttaaaagattttgttcatgaatggttacattgctt 29006309  T
Q  333 caat 336  Q
    ||||    
T  29006308 caat 29006305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 211
Target Start/End: Complemental strand, 36203209 - 36203051
Alignment:
Q  52 caatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagaga 151  Q
    |||| ||||||||||||||||||| || |||||| ||||  |||| | || ||||||  ||||||| || |||||| ||| | | ||||| ||||| |||    
T  36203209 caatagaatccttgacgtgacttgcacgttcacatcaagtgtatc-tgcaatggtagcttacaaaataaagttctgacaaattctctcgtacactaaaga 36203111  T
Q  152 taaaaaagaatgatttagtataatttttgacagaatttcgactcacaagaatgtgatttt 211  Q
      | || |||| ||||||||||||||| | |||||||| ||||||||  |||||||||||    
T  36203110 agagaacgaataatttagtataattttcggcagaatttagactcacaccaatgtgatttt 36203051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 262 - 379
Target Start/End: Original strand, 11042984 - 11043101
Alignment:
Q  262 agaaacttatgtcatttgatgaagaaaaacaatcatttggaagagtttgttcatgaattgttatattgcttcaattgtcaagcaatacacctttgctcta 361  Q
    ||||||| ||||| |||| || ||| || ||| | |||| |||||||||||||||||| | || |||| || ||| | ||| || ||||||||| |||||    
T  11042984 agaaactcatgtcctttggtgtagataatcaaccctttgaaagagtttgttcatgaatggctagattgattaaatggacaaacattacaccttttctcta 11043083  T
Q  362 aaaggtctctatttaacc 379  Q
    |||| ||| |||||||||    
T  11043084 aaagatctttatttaacc 11043101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 351
Target Start/End: Complemental strand, 15205241 - 15205185
Alignment:
Q  295 catttggaagagtttgttcatgaattgttatattgcttcaattgtcaagcaatacac 351  Q
    |||||| ||||||||||||||||||  ||| |||||||||||| ||  |||||||||    
T  15205241 catttgtaagagtttgttcatgaatgattacattgcttcaattctcgtgcaatacac 15205185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 20 - 385
Target Start/End: Original strand, 14218851 - 14219218
Alignment:
Q  20 aaaagggtatatcagcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaac 118  Q
    ||||| ||||||||  ||||| |||||| | ||| || |||||  |||| |||| |||||||||||||||| | ||||  ||| || |||| |||||||     
T  14218851 aaaagagtatatcaatgaatctccttcaagatactatagaatcactgacttgacatgtacattcacaccaaacgtatccatcaatgatagtttacaaaat 14218950  T
Q  119 aatgttctgtcaattcccctcgtgcactagagataaaaaagaatgatttagtataatttttgacagaatttcgactcacaagaatgtga-ttttgtctct 217  Q
    || ||||| ||||||  |||||||||||||||| || ||||||||||||||||| ||||||  || ||||| ||||||||| ||||||| ||||||  ||    
T  14218951 aaagttctttcaattttcctcgtgcactagagaaaagaaagaatgatttagtattatttttagcataattttgactcacaataatgtgatttttgtacct 14219050  T
Q  218 a-ttttctgaatacttttctgcctccaaagtgtctatctttatgaagaaacttatgtcatttgatgaagaaaaacaatcatttggaagagtttgttcatg 316  Q
    | |||| |||||  ||||||||  ||||||||||| | |||||  ||||||||||| |||||| |||||| ||||||   |||| ||||||| |||||||    
T  14219051 atttttttgaattattttctgctgccaaagtgtctctatttatagagaaacttatgccatttggtgaagagaaacaacactttgaaagagttggttcatg 14219150  T
Q  317 aattgttatattgcttcaattgtcaagcaatacacctttgctctaaaaggtctctatttaaccattgca 385  Q
    |    ||| |||||||||||||| ||||| | ||| ||| |||| |||| | |||||||||| ||||||    
T  14219151 accgattacattgcttcaattgtaaagcattgcacattttctct-aaagatttctatttaactattgca 14219218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 69 - 385
Target Start/End: Original strand, 34681118 - 34681432
Alignment:
Q  69 tgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaaagaatgattta 168  Q
    ||||||| ||||||||| ||||| ||||| ||| || |||| |||  || || ||| |||||||| | ||||| ||| ||||| || ||||||| |        
T  34681118 tgacttgcacattcacatcaagcgtatcgatcaatgatagtttacgtaataaagttttgtcaatttctctcgttcaccagagaaaagaaagaattag--- 34681214  T
Q  169 gtataatttttgacagaatttcgactcacaagaatgtgatttt--gtctctattttctgaatacttttctgcctccaaagtgtctatctttatgaagaaa 266  Q
    || | ||||| | || ||||| |||||||||||||||||||||  || ||| |||||| | |  |||| |||||  ||| ||||  | |||||  |||||    
T  34681215 gtgttattttcggcataattttgactcacaagaatgtgattttctgtgtct-ttttctaactgattttatgcctaaaaaatgtccctatttatagagaaa 34681313  T
Q  267 cttatgtcatttgatgaagaaaaacaatcatttggaagagtttgttcatgaattgttatattgcttcaattgtcaagcaatacacctttgctctaaaagg 366  Q
     ||||||| ||||  ||||||||||||   ||| ||||||||||||||| ||| || | ||||||||||||||||| || ||||| ||| ||||||||||    
T  34681314 tttatgtcttttggggaagaaaaacaactcttttgaagagtttgttcatcaatggtaacattgcttcaattgtcaaacattacactttttctctaaaagg 34681413  T
Q  367 tctctatttaaccattgca 385  Q
    | | | |||||||||||||    
T  34681414 tttatgtttaaccattgca 34681432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 17862450 - 17862390
Alignment:
Q  164 atttagtataatttttgacagaatttcgactcacaagaatgtgattttgtctctattttct 224  Q
    ||||| ||| |||||||||| ||||| || ||||||||||| |||||||| ||||||||||    
T  17862450 atttaatattatttttgacaaaattttgagtcacaagaatgagattttgtatctattttct 17862390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 58 - 385
Target Start/End: Complemental strand, 217861 - 217544
Alignment:
Q  58 aatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaa 157  Q
    ||||||||| | |||||| ||||||||||||||  ||||| ||| ||||||| ||||||| ||||||||| ||||| | |||||| |||||||| || ||    
T  217861 aatccttgaagagacttgcacattcacaccaagtgtatcgatcaatggtagtttacaaaataatgttctgccaatttctctcgtgaactagagaaaagaa 217762  T
Q  158 agaatgatttagtataatttttgacagaatttcgactcacaagaatgtgattttgtctctat-tttctgaatacttttctgcctccaaagtgtctatctt 256  Q
    ||||| |||||| || ||||| | |||||||  ||| ||||| ||||||||||| | | |||  || |||||  ||||||||||| ||||||||||  ||    
T  217761 agaattatttagaattattttcggcagaattctgacacacaacaatgtgatttt-tatttatacttttgaattattttctgcctctaaagtgtcta--tt 217665  T
Q  257 tatgaagaaacttatgtcatttgatgaagaaaaacaatcatttggaagagtttgttcatgaattgttatattgcttcaattgtcaagcaatacacctttg 356  Q
    |||  |||||||||||||||||| | |||| |||||| | |||| |||||||||| |||||        |||||||  ||||||||| | ||| | |||     
T  217664 tatagagaaacttatgtcatttggtaaagataaacaaccttttgaaagagtttgtccatga--------attgctttgattgtcaagaattacgcatttt 217573  T
Q  357 ctctaaaaggtctctatttaaccattgca 385  Q
    ||||||||| |||||||||||||||||||    
T  217572 ctctaaaagatctctatttaaccattgca 217544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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