View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20928_low_7 (Length: 304)
Name: NF20928_low_7
Description: NF20928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20928_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 85 - 297
Target Start/End: Complemental strand, 29019164 - 29018952
Alignment:
| Q |
85 |
caaagaaatggagaattgcgagttcgaactcacgtcacaacatatcaaatttctctccaatcttttatcatttgagctttacttatagacatatattgac |
184 |
Q |
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| T |
29019164 |
caaagaaatagagaattgcgaattcgaacttacgtcacaacatatcaaatgtctctccaatcttttatcatttgaactttacttatagacatgtattgac |
29019065 |
T |
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| Q |
185 |
attttatatgagaaaatattatagtattaggggaaggaatatagggattaccttccctggatgagtattgccccaatctacagcatacttaatatcttga |
284 |
Q |
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| T |
29019064 |
attttatatgagaaaatattatagtattaggggaaggaatatagggattaccttccctggatgagtattgccccaatcaacagcatacttaatatcttga |
29018965 |
T |
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| Q |
285 |
cacaggttctgct |
297 |
Q |
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|||| ||| |||| |
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| T |
29018964 |
cacatgttttgct |
29018952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 105 - 297
Target Start/End: Complemental strand, 29040505 - 29040311
Alignment:
| Q |
105 |
agttcgaactcacgtcacaacatatcaaatttctctccaatcttttatcatttgagctttacttat-agacatatattgacattttatatgagaaaatat |
203 |
Q |
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| T |
29040505 |
agttcaaactcaagtcccagaatatcaaatgtttatccaatcttttatcgtttgaactatacttctgaggcatatattgagattttataacagcaattac |
29040406 |
T |
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| Q |
204 |
tatagtattaggggaa-ggaatatagggattaccttccctggatgagtattgccccaatctacagcatacttaatatcttgacacaggttctgct |
297 |
Q |
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| T |
29040405 |
tatagtattacgggaaaggaatatagggattaccttctctggatgtgtattgccccaatcaacagcatacttaatatcttgacacatgttttgct |
29040311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 29041211 - 29041160
Alignment:
| Q |
18 |
acgaaccttgtaccttctctgccaatctcttgtgcctgttgaattatgcatt |
69 |
Q |
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| T |
29041211 |
acgaaccttgtaccttctctgccaatctcttgtgcctgttgaattatgcatt |
29041160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 29019512 - 29019471
Alignment:
| Q |
24 |
cttgtaccttctctgccaatctcttgtgcctgttgaattatg |
65 |
Q |
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| T |
29019512 |
cttgtcccttctctgccaatctcttctgcctgttgaattatg |
29019471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 171
Target Start/End: Complemental strand, 26919928 - 26919846
Alignment:
| Q |
90 |
aaatggagaattgcgagttcgaactcacgtcacaacatatcaaatttctctccaa-tcttttatcatttgagctttacttata |
171 |
Q |
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| T |
26919928 |
aaatggagaattgtgagttcatcctcacgtcccaacatatcaaatatctttacaatttttttatcatttgagttatacttata |
26919846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 169
Target Start/End: Original strand, 39992176 - 39992223
Alignment:
| Q |
122 |
caacatatcaaatttctctccaatcttttatcatttgagctttactta |
169 |
Q |
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| T |
39992176 |
caacatatcaaatttctctgcaattctttatcatttgagttttactta |
39992223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 160
Target Start/End: Complemental strand, 15091360 - 15091290
Alignment:
| Q |
90 |
aaatggagaattgcgagttcgaactcacgtcacaacatatcaaatttctctccaatcttttatcatttgag |
160 |
Q |
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| T |
15091360 |
aaatggagaattgtgagttcaaactcacgccccaacatatcaaatgtctttgcaatattttaccatctgag |
15091290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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