View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20929_high_15 (Length: 249)
Name: NF20929_high_15
Description: NF20929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20929_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 27 - 232
Target Start/End: Original strand, 3903207 - 3903412
Alignment:
| Q |
27 |
tgtttggtcggccctagttttgctgcctcattaattaaaatgtcaagaatgatataaaaatgaatggtatataattgtgaggtgaagtcgtaaaatggaa |
126 |
Q |
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| T |
3903207 |
tgtttggtcggccctagttttattgcctcattaattaaaatgccaagaatgatataaaaatgaatggtatataattgtgagctgaagtcgtaaaatggaa |
3903306 |
T |
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| Q |
127 |
aaacatactaagtttgatatatacaacaagagggagaagcaagagtactactagacaagaaaataaataatgaatatcccaagatagaaaggtgatacat |
226 |
Q |
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| T |
3903307 |
acacatactaagtttgatatatacaacaagagggagaagcaagagtactactagacaagaaaataaataatgaatatcccaagatagaaaggtgatacat |
3903406 |
T |
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| Q |
227 |
gcaaag |
232 |
Q |
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| T |
3903407 |
gcaaag |
3903412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 70 - 232
Target Start/End: Original strand, 3906023 - 3906175
Alignment:
| Q |
70 |
caagaatgatataaaaatgaatggtatataattgtgaggtgaagtcgtaaaatggaaaaacatactaagtttgatatatacaacaagagggagaagcaag |
169 |
Q |
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| T |
3906023 |
caagaatgatataaaaatgcatagtatataattgtgagccgaagtcgtaaaatggaa-------ctaagtt-ga-atatacaacaagagggagaagcaac |
3906113 |
T |
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| Q |
170 |
agtactactagacaagaaaataaataatgaatatcccaagatagaaaggtgatacatgcaaag |
232 |
Q |
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| T |
3906114 |
agtacta-tggacaagaaaataaataatgaatatcccaagatagaaaggtgatacatggaaag |
3906175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 96 - 233
Target Start/End: Original strand, 3900277 - 3900411
Alignment:
| Q |
96 |
tataattgtgaggtgaagtcgtaaaatggaaaaacatactaagtttgatatatacaacaagagggagaagcaagagtactactagacaagaaaataaata |
195 |
Q |
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| T |
3900277 |
tataattgtgagttgaagtcataaaatgaattcaaatacagagtttgatatacgcaacaagagtgtgaagaaagagtactactagacaagaaaa-aaata |
3900375 |
T |
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| Q |
196 |
atgaatatcccaagatagaaaggtgatacatgcaaagt |
233 |
Q |
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| T |
3900376 |
atgaatattccaag-ta-aaaggtgatacatgcaaagt |
3900411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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