View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20929_high_18 (Length: 246)
Name: NF20929_high_18
Description: NF20929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20929_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 2862861 - 2862630
Alignment:
| Q |
1 |
gcttacattcaatcacgtctattttcaaaaggtgctatgtagggtgtctgtgaaagtgttttataggtactatgcaaagtcaaacacttgggcggcattc |
100 |
Q |
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| T |
2862861 |
gcttacattcaatcacgtccattttcaaaaggtgctatgtagggtgtctgtgaaagtgttttataggtactatgcaaagtcaaacacttgggcggcattc |
2862762 |
T |
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| Q |
101 |
cgcgaaataaaacatccaagaactcagttctcatttgtgatttaagcacctgtttttaagttcaataaacatcaatatggtacgaaaaataggaaaaaga |
200 |
Q |
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| T |
2862761 |
cgcgaaataaaacatccaagaactcagttctcatttgtgatttaagcacctgtttttaagttcaataaacatcaatatggtacgaaaaataggaaaaaga |
2862662 |
T |
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| Q |
201 |
ttatagtataggacagaagtaaacacctcatt |
232 |
Q |
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| T |
2862661 |
ttataccataggacagaagtaaacacctcatt |
2862630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 225
Target Start/End: Complemental strand, 2862005 - 2861900
Alignment:
| Q |
120 |
gaactcagttctcatttgtgatttaagcacctgtttttaagttcaataaacatcaatatggtacgaaaaatagg-aaaaagattatagtataggacagaa |
218 |
Q |
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|||||||||||| ||| ||||||| ||||| |||||||||| |||||||| |||||||||| ||||| ||| ||||| |||| | ||||||||||| |
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| T |
2862005 |
gaactcagttctgattaatgatttatgcacccatttttaagtttaataaacaacaatatggta-gaaaatcaggaaaaaatattagacaataggacagaa |
2861907 |
T |
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| Q |
219 |
gtaaaca |
225 |
Q |
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||||||| |
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| T |
2861906 |
gtaaaca |
2861900 |
T |
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