View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20929_high_22 (Length: 241)
Name: NF20929_high_22
Description: NF20929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20929_high_22 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 3902973 - 3903198
Alignment:
| Q |
1 |
attattcttcaaacaatgaacgcacttaatttaaagaaatgaaatacaacaaaactacaagaattgtctagttggggagaatattaacaaaaatatacct |
100 |
Q |
| |
|
||||||||||||||||| ||| || |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3902973 |
attattcttcaaacaataaacacatttaactaaaagaaatgaaatacaacaaaactacaagaattgtctagttggggagaatattaacaaaaatatacct |
3903072 |
T |
|
| Q |
101 |
tattctcatgcttcactgattcattcaggggagaggagtgggatttactaataaaaacaatttggtcagatgtttgatttatttttgtaaaatcaattct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3903073 |
tattctcatgcttcactgattcattcaggggagaggagtggaatttactaataaaaacaatttggtcagatgtttgatttatttttgtaaaatcaattct |
3903172 |
T |
|
| Q |
201 |
tatttgactttttctaacatagaaga |
226 |
Q |
| |
|
||||| |||||||||||||||||||| |
|
|
| T |
3903173 |
tattttactttttctaacatagaaga |
3903198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 33 - 97
Target Start/End: Original strand, 3905583 - 3905647
Alignment:
| Q |
33 |
aaagaaatgaaatacaacaaaactacaagaattgtctagttggggagaatattaacaaaaatata |
97 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||| ||||||| ||||||||||||||||| |||| |
|
|
| T |
3905583 |
aaagaaatgaaatataacaaaactacaataattgactagttgaggagaatattaacaaaattata |
3905647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 184 - 240
Target Start/End: Original strand, 3894373 - 3894429
Alignment:
| Q |
184 |
tttgtaaaatcaattcttatttgactttttctaacatagaagacct-attttagtatt |
240 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3894373 |
tttgtaaaatcaattcttattt-actttttctaacatagaagacctcattttagtatt |
3894429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 3905793 - 3905840
Alignment:
| Q |
182 |
tttttgtaaaatcaattcttatttgactttttctaacatagaagacct |
229 |
Q |
| |
|
||||||||||||||||||||| || |||||||||| |||| ||||||| |
|
|
| T |
3905793 |
tttttgtaaaatcaattcttaatttactttttctatcatataagacct |
3905840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University