View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20929_high_23 (Length: 240)

Name: NF20929_high_23
Description: NF20929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20929_high_23
NF20929_high_23
[»] chr4 (27 HSPs)
chr4 (1-234)||(1548261-1548495)
chr4 (1-168)||(1552668-1552838)
chr4 (1-234)||(546941-547177)
chr4 (1-198)||(1600447-1600647)
chr4 (22-146)||(570400-570524)
chr4 (2-68)||(8187095-8187161)
chr4 (1-230)||(55908567-55908799)
chr4 (1-73)||(1524485-1524557)
chr4 (6-85)||(532222-532301)
chr4 (1-68)||(12121461-12121528)
chr4 (2-127)||(553508-553633)
chr4 (2-63)||(659738-659799)
chr4 (11-68)||(1519146-1519203)
chr4 (10-213)||(3438422-3438628)
chr4 (28-127)||(644885-644984)
chr4 (1-68)||(1513411-1513478)
chr4 (10-68)||(8184034-8184092)
chr4 (28-149)||(53761692-53761816)
chr4 (1-45)||(12116602-12116646)
chr4 (28-150)||(21834297-21834422)
chr4 (1-78)||(640943-641020)
chr4 (21-82)||(1537757-1537818)
chr4 (2-54)||(1508021-1508073)
chr4 (98-201)||(8186959-8187065)
chr4 (21-68)||(1489365-1489412)
chr4 (2-68)||(1545802-1545868)
chr4 (11-68)||(7225887-7225944)
[»] chr8 (7 HSPs)
chr8 (1-234)||(18315108-18315344)
chr8 (1-223)||(32151329-32151551)
chr8 (28-127)||(28246240-28246339)
chr8 (2-68)||(27922537-27922603)
chr8 (176-231)||(17627897-17627952)
chr8 (22-73)||(21235607-21235658)
chr8 (26-204)||(17636262-17636447)
[»] chr6 (24 HSPs)
chr6 (2-150)||(6432190-6432341)
chr6 (1-203)||(7119185-7119387)
chr6 (1-203)||(7131663-7131865)
chr6 (5-150)||(6394896-6395044)
chr6 (5-150)||(6426543-6426691)
chr6 (1-150)||(6402888-6403040)
chr6 (2-130)||(6589265-6589393)
chr6 (5-88)||(6410038-6410121)
chr6 (21-150)||(6416014-6416146)
chr6 (22-88)||(12102315-12102381)
chr6 (1-84)||(6596916-6596999)
chr6 (28-127)||(11936220-11936319)
chr6 (28-127)||(11948200-11948299)
chr6 (20-86)||(6423264-6423330)
chr6 (22-150)||(6594525-6594656)
chr6 (8-145)||(19632474-19632611)
chr6 (2-150)||(7994101-7994252)
chr6 (174-234)||(9411556-9411616)
chr6 (22-85)||(9410751-9410814)
chr6 (22-73)||(9411404-9411455)
chr6 (1-56)||(28935077-28935132)
chr6 (1-150)||(6585156-6585308)
chr6 (1-58)||(10579750-10579807)
chr6 (1-66)||(14802364-14802429)
[»] chr3 (8 HSPs)
chr3 (21-223)||(13470581-13470783)
chr3 (1-234)||(51113619-51113852)
chr3 (6-129)||(51120836-51120959)
chr3 (1-231)||(51764281-51764511)
chr3 (28-68)||(1657306-1657346)
chr3 (13-53)||(27005791-27005831)
chr3 (9-66)||(33714861-33714918)
chr3 (13-53)||(36811046-36811086)
[»] chr5 (5 HSPs)
chr5 (2-232)||(41889391-41889624)
chr5 (4-129)||(20478025-20478150)
chr5 (2-65)||(41901542-41901605)
chr5 (2-197)||(32267504-32267699)
chr5 (100-209)||(41901398-41901510)
[»] chr7 (2 HSPs)
chr7 (23-202)||(10614643-10614822)
chr7 (28-149)||(15092071-15092195)
[»] chr2 (3 HSPs)
chr2 (2-234)||(32785610-32785842)
chr2 (1-230)||(1037503-1037735)
chr2 (1-66)||(45245091-45245156)
[»] chr1 (5 HSPs)
chr1 (2-85)||(19468486-19468569)
chr1 (4-68)||(52082612-52082676)
chr1 (174-231)||(19468340-19468397)
chr1 (178-234)||(9581276-9581332)
chr1 (178-234)||(9586844-9586900)
[»] scaffold0295 (1 HSPs)
scaffold0295 (1-160)||(533-695)


Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 1548495 - 1548261
Alignment:
Q  1 gagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaa-gtagcttcacttttaaactacgagc 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  1548495 gagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaaagtagcttcacttttaaactacgagc 1548396  T
Q  100 taagttcaactgtctaatcttacaacatcttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattgggg 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1548395 taagttcaactgtctaatcttacaacatcttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattgggg 1548296  T
Q  200 aaaatcgaagaaaatattttgatggtttcatctct 234  Q
    |||||||||||||||||||||||||||||||||||    
T  1548295 aaaatcgaagaaaatattttgatggtttcatctct 1548261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 1552838 - 1552668
Alignment:
Q  1 gagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcactt---ttaaactacga 97  Q
    |||||||||||||| |||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||   | |||||| |     
T  1552838 gagtgtttcatcattaatatttgtatgtgacaaattcaacacttccagtttgggaatttcaaagttcagtccaagtagcttcccttctataaaactatgg 1552739  T
Q  98 gctaagttcaactgtctaatcttacaacatcttaaaacttcacaaataccttcgtctgatatgccactgca 168  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1552738 gctaagttcaaatgtctaatcttacaacatcttaaaacttcacaaataccttcgtctgatatgccagtgca 1552668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 546941 - 547177
Alignment:
Q  1 gagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagct 100  Q
    ||||||||||||||  | | ||||| |||||||||||| |||||||| ||| |||| ||||||||||| ||||| ||| ||||||  ||||| |   | |    
T  546941 gagtgtttcatcattgacaattgtacgtgacaagttcaccacctccaatttaggaacttcaaagttcattccaaataggttcactactaaacaattggat 547040  T
Q  101 aagttcaactgtctaatcttacaacatct---taaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattgg 197  Q
    |||||||| || || ||||||||||||||   |||||| ||||||||||  || || ||||||  ||  |||| | | ||||||||||||||||||||||    
T  547041 aagttcaaatgccttatcttacaacatctccttaaaacatcacaaatactgtcttcagatatgttacgacaataacttaaatcaagcagttgcaaattgg 547140  T
Q  198 ggaaaatcgaagaaaatattttgatggtttcatctct 234  Q
    |||| || |||| ||| ||||||||| ||||||||||    
T  547141 ggaacatggaaggaaacattttgatgctttcatctct 547177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 1600447 - 1600647
Alignment:
Q  1 gagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagct 100  Q
    ||||| |||||| ||||  ||||||| ||||||||||||||||||||||||  ||| ||||||||||| |||  | ||||||| | || |||   | |||    
T  1600447 gagtgcttcatcgtcaacccttgtatatgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgggct 1600546  T
Q  101 aagttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattgg 197  Q
    |||||||| |||||||| ||| || ||   |||||||||| |||||||||||| || ||||||  | ||||| |  ||||||||||||||||||||||||    
T  1600547 aagttcaaatgtctaattttagaaaatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgcaaattgg 1600646  T
Q  198 g 198  Q
    |    
T  1600647 g 1600647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 146
Target Start/End: Original strand, 570400 - 570524
Alignment:
Q  22 tgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatctta 121  Q
    ||||| |||||||||||||||||| |||||| ||| ||||||||||| |||| | || ||||||||| | |   ||||||||||||| || ||||  |||    
T  570400 tgtatatgacaagttcaacacctcgagtttgagaacttcaaagttcaatccacgcagtttcacttttgagcagtgagctaagttcaaatgcctaagttta 570499  T
Q  122 caacatcttaaaacttcacaaatac 146  Q
    |||||||||||||||| ||||||||    
T  570500 caacatcttaaaacttgacaaatac 570524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 8187161 - 8187095
Alignment:
Q  2 agtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 68  Q
    ||||||| ||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8187161 agtgttttatcatcaactcttgtatgtgacaagttcaacacctccagtttggaaatttcaaagttca 8187095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 55908799 - 55908567
Alignment:
Q  1 gagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagct 100  Q
    ||||||||||||||||| || ||||||||||||||| |||||||| | ||  |||| || |||||| | || |||||| |||||| || |||     |||    
T  55908799 gagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagtttcactcttgaacagtaggct 55908700  T
Q  101 aagttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattgg 197  Q
    || ||||| ||||||| ||||||||||   |||| |||||||||||||||||| || ||||||  |  |||     |||||||||| | |||||||||||    
T  55908699 aaattcaaatgtctaaccttacaacatctccttagaacttcacaaataccttcttcagatatgttatggcaggagctcaaatcaagaaattgcaaattgg 55908600  T
Q  198 ggaaaatcgaagaaaatattttgatggtttcat 230  Q
    ||||||| |||| ||| | | ||||| ||||||    
T  55908599 ggaaaatggaagcaaacaatatgatgttttcat 55908567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 1524557 - 1524485
Alignment:
Q  1 gagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtcca 73  Q
    ||||||||||||||||| ||||||| ||||||| |||||||||||||  ||||||| ||||||||||| ||||    
T  1524557 gagtgtttcatcatcaacacttgtacgtgacaaattcaacacctccaaattgggaacttcaaagttcattcca 1524485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 85
Target Start/End: Original strand, 532222 - 532301
Alignment:
Q  6 tttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcact 85  Q
    |||||||||||||  |||||| |||||||||||||||||| || ||||| | ||||||||||| ||||||||| ||||||    
T  532222 tttcatcatcaatgtttgtatatgacaagttcaacacctctagcttggggacttcaaagttcattccaagtagattcact 532301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 12121528 - 12121461
Alignment:
Q  1 gagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 68  Q
    ||||||||||||||||| | |||||| ||||||||||||||| || |||||||||| |||||||||||    
T  12121528 gagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttca 12121461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 127
Target Start/End: Original strand, 553508 - 553633
Alignment:
Q  2 agtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagcta 101  Q
    |||| |||||||||||  ||||||  ||||||||||||||||||||||||| ||| || |||||||| |  | ||| ||||||| || |||  || | ||    
T  553508 agtgcttcatcatcaactcttgtaaatgacaagttcaacacctccagtttgagaactttaaagttcaatgtacgtaacttcactcttgaacagcgggtta 553607  T
Q  102 agttcaactgtctaatcttacaacat 127  Q
    ||||||| |||||||| |||||||||    
T  553608 agttcaaatgtctaatgttacaacat 553633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 659738 - 659799
Alignment:
Q  2 agtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaa 63  Q
    |||||||||| || || ||||||||||||||||||||||||||| |||||||||| ||||||    
T  659738 agtgtttcattattaacacttgtatgtgacaagttcaacacctctagtttgggaacttcaaa 659799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 1519203 - 1519146
Alignment:
Q  11 tcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 68  Q
    |||||||  |||||||||||||||||||||||||| |||||||||| |||||||||||    
T  1519203 tcatcaacccttgtatgtgacaagttcaacacctctagtttgggaacttcaaagttca 1519146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 213
Target Start/End: Complemental strand, 3438628 - 3438422
Alignment:
Q  10 atcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaac 109  Q
    ||||||||  ||||||||||||||| |||| ||||||| ||| | ||  |||||||||| | ||   |  ||||||  ||||| || ||||||||||||     
T  3438628 atcatcaactcttgtatgtgacaagctcaatacctccaattttgaaacatcaaagttcattgcacacaaattcactcctaaacaaccagctaagttcaaa 3438529  T
Q  110 tgtctaatcttacaacat---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaatcg 206  Q
    ||||||||||||||||||   |||||||||| |  || ||||||||| ||||||     ||| |   ||| ||||||||| ||||||||||||||||| |    
T  3438528 tgtctaatcttacaacatctccttaaaacttgaataacaccttcgtcagatatgtagtcgcattctctcacatcaagcagctgcaaattggggaaaatag 3438429  T
Q  207 aagaaaa 213  Q
    |||||||    
T  3438428 aagaaaa 3438422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 127
Target Start/End: Original strand, 644885 - 644984
Alignment:
Q  28 tgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat 127  Q
    ||||||||  ||||||||||||||||||| ||||||||||| |  ||||||||||| | || |||  |||| ||| ||||| |||||||| |||||||||    
T  644885 tgacaagtctaacacctccagtttgggaacttcaaagttcaatgtaagtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaacat 644984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 1513478 - 1513411
Alignment:
Q  1 gagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 68  Q
    ||||||||||||||||| | |||||  ||||||||||||||| || |||||||||| |||||||||||    
T  1513478 gagtgtttcatcatcaacatttgtaaatgacaagttcaacacttctagtttgggaacttcaaagttca 1513411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 8184092 - 8184034
Alignment:
Q  10 atcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 68  Q
    ||||||||  |||||||||||||||||||||||||| ||||| |||| |||||||||||    
T  8184092 atcatcaactcttgtatgtgacaagttcaacacctctagtttcggaacttcaaagttca 8184034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 149
Target Start/End: Complemental strand, 53761816 - 53761692
Alignment:
Q  28 tgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat 127  Q
    ||||||||||||| |||| || ||||||| | ||||||||| ||||| |||||||||| || |||     ||||||||||| || ||||| |||||||||    
T  53761816 tgacaagttcaacgcctctagcttgggaactacaaagttcattccaattagcttcactcttgaacactcggctaagttcaaatgcctaatgttacaacat 53761717  T
Q  128 ---cttaaaacttcacaaatacctt 149  Q
       |||||||||| |||||||||||    
T  53761716 ctccttaaaacttgacaaatacctt 53761692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 12116646 - 12116602
Alignment:
Q  1 gagtgtttcatcatcaatacttgtatgtgacaagttcaacacctc 45  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||    
T  12116646 gagtgattcatcatcaacacttgtatgtgacaagttcaacacctc 12116602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 150
Target Start/End: Complemental strand, 21834422 - 21834297
Alignment:
Q  28 tgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat 127  Q
    |||||||| |||||||||||| ||||||| | ||||||| |  | | |||||||||||||  ||| ||  | ||||||||| ||  ||||||||||||||    
T  21834422 tgacaagtccaacacctccagcttgggaactacaaagttgatactatgtagcttcactttataacaacctgataagttcaaatgcttaatcttacaacat 21834323  T
Q  128 ---cttaaaacttcacaaataccttc 150  Q
       ||||||||||| |||||||||||    
T  21834322 ttccttaaaacttcgcaaataccttc 21834297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 640943 - 641020
Alignment:
Q  1 gagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtag 78  Q
    |||||||||||||||||   |||||| |||||||||||||||||||| | | || | |||||| |||| |||||||||    
T  640943 gagtgtttcatcatcaacgtttgtatctgacaagttcaacacctccaatattggtagttcaaatttcattccaagtag 641020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 1537818 - 1537757
Alignment:
Q  21 ttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttc 82  Q
    |||||| ||||||||||||||| || |||||||||| ||||||||||| |||| | ||||||    
T  1537818 ttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattccatgcagcttc 1537757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 1508073 - 1508021
Alignment:
Q  2 agtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttggg 54  Q
    |||||||||||||||| | | |||||||||||||||||||| || ||||||||    
T  1508073 agtgtttcatcatcaacattggtatgtgacaagttcaacacttctagtttggg 1508021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 201
Target Start/End: Complemental strand, 8187065 - 8186959
Alignment:
Q  98 gctaagttcaactgtctaatcttacaacatctt---aaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaat 194  Q
    ||||||||||| |  ||||||| |||||||||    ||||||| |||||||||||| || |||||| ||  ||||| | ||||||||||||  |||||||    
T  8187065 gctaagttcaaatccctaatctcacaacatctcttcaaaacttgacaaataccttcttcagatatgtcatagcaatgactcaaatcaagcaactgcaaat 8186966  T
Q  195 tggggaa 201  Q
    |||||||    
T  8186965 tggggaa 8186959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 1489412 - 1489365
Alignment:
Q  21 ttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 68  Q
    |||||| ||||||||||||||| || |||||||||| |||||||||||    
T  1489412 ttgtatatgacaagttcaacacttctagtttgggaacttcaaagttca 1489365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 1545802 - 1545868
Alignment:
Q  2 agtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 68  Q
    ||||||||||||||||  ||||||    |||||||||||||||||||||| |||| || ||||||||    
T  1545802 agtgtttcatcatcaactcttgtaaacaacaagttcaacacctccagtttaggaactttaaagttca 1545868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 7225944 - 7225887
Alignment:
Q  11 tcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 68  Q
    |||||||  |||||||||||||||||||| ||||||| || | ||| |||||||||||    
T  7225944 tcatcaactcttgtatgtgacaagttcaagacctccaattcgagaacttcaaagttca 7225887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 18315344 - 18315108
Alignment:
Q  1 gagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagct 100  Q
    ||||| |||||||||||   |||||||||||||||||||||||||||||||||||| || |||||||| |||| ||||||||| | || ||  |||||||    
T  18315344 gagtgcttcatcatcaacttttgtatgtgacaagttcaacacctccagtttgggaactttaaagttcattccacgtagcttcattcttgaatcacgagct 18315245  T
Q  101 aagttcaactgtctaatct---tacaacatcttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattgg 197  Q
    |||||||||||||||||||    ||||| || |||||||| |||||||||||| || | ||||  |  ||| |   ||||||||||||  ||||||||||    
T  18315244 aagttcaactgtctaatctcagaacaacttcgtaaaacttgacaaataccttcttcaggtatgttatcgcagtagctcaaatcaagcaactgcaaattgg 18315145  T
Q  198 ggaaaatcgaagaaaatattttgatggtttcatctct 234  Q
    ||||||| |||||||||||||||||| |||| |||||    
T  18315144 ggaaaatggaagaaaatattttgatgctttcctctct 18315108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 32151329 - 32151551
Alignment:
Q  1 gagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagct 100  Q
    |||||||||||||||||  ||||||  ||||||||| ||||||||||| |||| || ||| ||||||| |||| | |||||||| | |||||  |  |      
T  32151329 gagtgtttcatcatcaaaccttgtacatgacaagtttaacacctccagattggaaacttcgaagttcattccacgcagcttcacatgtaaacagccggtg 32151428  T
Q  101 aagttcaactgtctaatcttacaacatcttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattgggga 200  Q
    || ||||| || ||||||| | | ||||||||||||| |||||| ||||| || ||||||  |  ||||    |||||||||||||||||||||| ||||    
T  32151429 aaattcaaatgcctaatctcagagcatcttaaaacttgacaaattccttcttcagatatgttatggcaacacctcaaatcaagcagttgcaaattaggga 32151528  T
Q  201 aaatcgaagaaaatattttgatg 223  Q
    |||| |||| ||| |||||||||    
T  32151529 aaatggaagcaaacattttgatg 32151551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 127
Target Start/End: Complemental strand, 28246339 - 28246240
Alignment:
Q  28 tgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat 127  Q
    |||||||| |||||||||||||||||||| ||||||||||| |  | ||||||||| | || ||| ||||| ||| ||||| |||||||| |||||||||    
T  28246339 tgacaagtccaacacctccagtttgggaacttcaaagttcaatgtatgtagcttcagtcttgaacaacgagttaaattcaaatgtctaatgttacaacat 28246240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 27922537 - 27922603
Alignment:
Q  2 agtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 68  Q
    |||| ||||||||||| | |||||| |||||||||||||||||||| |||||||| |||||||||||    
T  27922537 agtgcttcatcatcaacatttgtatatgacaagttcaacacctccaatttgggaacttcaaagttca 27922603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 176 - 231
Target Start/End: Complemental strand, 17627952 - 17627897
Alignment:
Q  176 aaatcaagcagttgcaaattggggaaaatcgaagaaaatattttgatggtttcatc 231  Q
    ||||||||||||||||||||||||||||| |||| ||| ||||||||| |||||||    
T  17627952 aaatcaagcagttgcaaattggggaaaatggaagcaaacattttgatgttttcatc 17627897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 21235607 - 21235658
Alignment:
Q  22 tgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtcca 73  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||| ||||    
T  21235607 tgtatatgacaagttcaacacctccagtttgggaacttcaaagttcactcca 21235658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 204
Target Start/End: Complemental strand, 17636447 - 17636262
Alignment:
Q  26 tgtgacaagttcaacacctccagtttgggaatttcaaagttca----gtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatctta 121  Q
    |||||||||||||||||||||| |||||||| |||||||||||     || | |||| |||||| || |||  ||  |||||||||| || ||||| |||    
T  17636447 tgtgacaagttcaacacctccaatttgggaacttcaaagttcattcgatcgatgtagtttcactcttgaacatcggcctaagttcaaatgcctaatatta 17636348  T
Q  122 caacat---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaat 204  Q
     |||||   |||||||||| |||||||||||  ||||||||   | ||||||     ||||||||||| |||||||||||||||||    
T  17636347 gaacatccccttaaaacttgacaaatacctttctctgatattttattgcaatctcgtaaatcaagcagctgcaaattggggaaaat 17636262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 2 - 150
Target Start/End: Original strand, 6432190 - 6432341
Alignment:
Q  2 agtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagcta 101  Q
    ||||||||||||||||  ||||||| ||||||||||||||||| ||| ||||||| ||||||||||| |||| ||||||||||||||| || |   ||||    
T  6432190 agtgtttcatcatcaacgcttgtatttgacaagttcaacaccttcagcttgggaacttcaaagttcattccatgtagcttcacttttatacaataggcta 6432289  T
Q  102 agttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttc 150  Q
    ||||||| ||| |||  |||||||||   |||||||||| ||||||||||||    
T  6432290 agttcaaatgtttaagtttacaacatctccttaaaacttgacaaataccttc 6432341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 7119185 - 7119387
Alignment:
Q  1 gagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagct 100  Q
    |||||||||||||||||   | |||| ||||||||||||||||||||| | | |||   ||||||||| |||||||||||||||| || |||   | |||    
T  7119185 gagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggtgaacaacaaagttcattccaagtagcttcactcttgaacagtgggct 7119284  T
Q  101 aagttcaactgtctaatcttacaacatct---taaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattgg 197  Q
    |||||||| ||| |||||||| |||||||   |||||||| ||||||||||||    ||||||  | ||||| || |||||||||| ||||| |||||||    
T  7119285 aagttcaaatgtttaatcttagaacatctccttaaaacttgacaaataccttca---gatatgttattgcaagtattcaaatcaagaagttgtaaattgg 7119381  T
Q  198 ggaaaa 203  Q
    ||||||    
T  7119382 ggaaaa 7119387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 7131663 - 7131865
Alignment:
Q  1 gagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagct 100  Q
    |||||||||||||||||   | |||| ||||||||||||||||||||| | | |||   ||||||||| |||||||||||||||| || |||   | |||    
T  7131663 gagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggcgaacaacaaagttcattccaagtagcttcactcttgaacagtgggct 7131762  T
Q  101 aagttcaactgtctaatcttacaacatct---taaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattgg 197  Q
    |||||||| ||| |||||||| |||||||   |||||||| ||||||||||||    ||||||  | ||||| || |||||||||| ||||| |||||||    
T  7131763 aagttcaaatgtttaatcttagaacatctccttaaaacttgacaaataccttca---gatatgttattgcaagtattcaaatcaagaagttgtaaattgg 7131859  T
Q  198 ggaaaa 203  Q
    ||||||    
T  7131860 ggaaaa 7131865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 150
Target Start/End: Original strand, 6394896 - 6395044
Alignment:
Q  5 gtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagt 104  Q
    |||||||||||||  ||||||| ||||||||||||||||||||| | ||||| | ||||||||| |||| |||| ||||||||| |||    ||||||||    
T  6394896 gtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagt 6394995  T
Q  105 tcaactgtctaatcttacaacat---cttaaaacttcacaaataccttc 150  Q
    |||| ||| ||| ||||||||||    ||||||||| ||||||||||||    
T  6394996 tcaaatgtttaagcttacaacatttctttaaaacttgacaaataccttc 6395044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 150
Target Start/End: Original strand, 6426543 - 6426691
Alignment:
Q  5 gtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagt 104  Q
    |||||||||||||| ||||| | |||||| |||||||||||||| | ||||| | ||||||||| |||| |||| ||||| ||| |||    ||||||||    
T  6426543 gtttcatcatcaatgcttgtgtttgacaaattcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacgtttgaacagaaagctaagt 6426642  T
Q  105 tcaactgtctaatcttacaacat---cttaaaacttcacaaataccttc 150  Q
    |||| ||| ||| ||||||||||   |||||||||||||||||||||||    
T  6426643 tcaaatgtttaagcttacaacatttccttaaaacttcacaaataccttc 6426691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 6402888 - 6403040
Alignment:
Q  1 gagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagct 100  Q
    |||||||||||||||||   | |||| ||||||||||||||| || |||| ||||| | ||||||| | |||||||||||||||| || |||  | || |    
T  6402888 gagtgtttcatcatcaaccttcgtatctgacaagttcaacacttctagttggggaactgcaaagtttattccaagtagcttcactcttgaacacccagtt 6402987  T
Q  101 aagttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttc 150  Q
    |||||||| || ||||| |||||||||   |||||||||| ||||||||||||    
T  6402988 aagttcaaatgcctaatgttacaacatctccttaaaacttgacaaataccttc 6403040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 130
Target Start/End: Complemental strand, 6589393 - 6589265
Alignment:
Q  2 agtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagcta 101  Q
    ||||||| ||||| || | |||||| |||||||||||||||||||||  |||||| | ||||||||| ||||||||||||||||||   ||     ||||    
T  6589393 agtgttttatcattaacatttgtatttgacaagttcaacacctccagcatgggaactacaaagttcattccaagtagcttcactttcttacagaaggcta 6589294  T
Q  102 agttcaactgtctaatcttacaacatctt 130  Q
    ||||||| || ||||||||||||||||||    
T  6589293 agttcaaatgcctaatcttacaacatctt 6589265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 88
Target Start/End: Original strand, 6410038 - 6410121
Alignment:
Q  5 gtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcactttt 88  Q
    |||||||||||||  ||||||| |||| |||||||||||| ||| ||||||| ||||||||||| |||| ||||||||||||||    
T  6410038 gtttcatcatcaacgcttgtatttgactagttcaacaccttcagcttgggaacttcaaagttcattccatgtagcttcactttt 6410121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 150
Target Start/End: Original strand, 6416014 - 6416146
Alignment:
Q  21 ttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatctt 120  Q
    |||||| ||||||||||||||||||||| ||||||| | |||||| || |||| ||||||||||||||  || |   ||||||||||| || | ||||||    
T  6416014 ttgtatttgacaagttcaacacctccaggttgggaactacaaagtccattccatgtagcttcacttttttacaaaaggctaagttcaaatgcccaatctt 6416113  T
Q  121 acaacat---cttaaaacttcacaaataccttc 150  Q
    |||||||    ||||||||| ||||||||||||    
T  6416114 acaacatatctttaaaacttgacaaataccttc 6416146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 12102315 - 12102381
Alignment:
Q  22 tgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcactttt 88  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||| | || |||||||||    
T  12102315 tgtatgtgacaagttcaacacctccagtttgggaacttcaaagttcaatccatgcagtttcactttt 12102381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 6596999 - 6596916
Alignment:
Q  1 gagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcac 84  Q
    ||||||||||||||||| | |||||  ||||||||||||||||||||| | ||||||||||||||| | | ||||| |||||||    
T  6596999 gagtgtttcatcatcaacatttgtacttgacaagttcaacacctccagctggggaatttcaaagtttatttcaagtcgcttcac 6596916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 127
Target Start/End: Complemental strand, 11936319 - 11936220
Alignment:
Q  28 tgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat 127  Q
    |||||||| |||||||||||||||||||| ||||||||||| |  | ||||||||| | || |||  |||| ||| ||||| |||||||| |||||||||    
T  11936319 tgacaagtccaacacctccagtttgggaacttcaaagttcaatgtacgtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaacat 11936220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 127
Target Start/End: Complemental strand, 11948299 - 11948200
Alignment:
Q  28 tgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat 127  Q
    |||||||| |||||||||||||||||||| ||||||||||| |  | ||||||||| | || |||  |||| ||| ||||| |||||||| |||||||||    
T  11948299 tgacaagtccaacacctccagtttgggaacttcaaagttcaatgtacgtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaacat 11948200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 6423264 - 6423330
Alignment:
Q  20 cttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcactt 86  Q
    ||||||| ||||||||||||||||||||| ||||||| || |||||||| | || ||||||||||||    
T  6423264 cttgtatttgacaagttcaacacctccagcttgggaacttaaaagttcattgcacgtagcttcactt 6423330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 150
Target Start/End: Complemental strand, 6594656 - 6594525
Alignment:
Q  22 tgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatctta 121  Q
    ||||| |||||||| |||||||||||||||||||| |  |||||| | |||| ||||||||||| || |||  |  | ||||| ||| ||| ||||||||    
T  6594656 tgtatttgacaagtacaacacctccagtttgggaactaaaaagtttattccatgtagcttcactcttgaacacccggataagtacaaatgtgtaatctta 6594557  T
Q  122 caacat---cttaaaacttcacaaataccttc 150  Q
     |||||   |||||||||| ||||||||||||    
T  6594556 taacatctccttaaaacttgacaaataccttc 6594525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 145
Target Start/End: Original strand, 19632474 - 19632611
Alignment:
Q  8 tcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttca 107  Q
    ||||||||||   ||||||  ||||||| ||||||||| || ||||||| |  |||||| | ||||||||| || ||| || |||  |||| ||||||||    
T  19632474 tcatcatcaacctttgtatacgacaagtccaacacctctagcttgggaactagaaagtttattccaagtaggttaactattgaacatcgagttaagttca 19632573  T
Q  108 actgtctaatcttacaacatcttaaaacttcacaaata 145  Q
    | ||  | |||||||||||||||||||||| |||||||    
T  19632574 aatgcgttatcttacaacatcttaaaacttgacaaata 19632611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 150
Target Start/End: Complemental strand, 7994252 - 7994101
Alignment:
Q  2 agtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagcta 101  Q
    |||||||| |||| ||  ||||||| ||||| |||||||||||| || || |||| | ||||||||| ||| |||||||||||| ||  || |   ||||    
T  7994252 agtgtttcgtcattaacccttgtatttgacatgttcaacacctctagcttcggaactacaaagttcattcctagtagcttcactcttgtacaatcggcta 7994153  T
Q  102 agttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttc 150  Q
     |||||| || || ||||||||||||   |||||||| | ||||||||||||    
T  7994152 tgttcaaatgcctgatcttacaacatttccttaaaacgtaacaaataccttc 7994101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 9411556 - 9411616
Alignment:
Q  174 tcaaatcaagcagttgcaaattggggaaaatcgaagaaaatattttgatggtttcatctct 234  Q
    ||||||||||||| ||||||||||||||||| |||| |||  |||||||| ||| ||||||    
T  9411556 tcaaatcaagcagctgcaaattggggaaaatggaagcaaaccttttgatgtttttatctct 9411616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 9410751 - 9410814
Alignment:
Q  22 tgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcact 85  Q
    |||||||||||| |||||||||||||  ||||||  ||||||||||| ||||| || |||||||    
T  9410751 tgtatgtgacaaattcaacacctccaacttgggagcttcaaagttcaatccaattaacttcact 9410814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 9411404 - 9411455
Alignment:
Q  22 tgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtcca 73  Q
    ||||| ||||||||||||||||||||| |||||||  |||||||||| ||||    
T  9411404 tgtatatgacaagttcaacacctccagcttgggaacctcaaagttcaatcca 9411455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 28935077 - 28935132
Alignment:
Q  1 gagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaa 56  Q
    ||||| |||||| ||||  |||||||||||||||||||||||||| |||| |||||    
T  28935077 gagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctcgagttggggaa 28935132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 6585308 - 6585156
Alignment:
Q  1 gagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagct 100  Q
    |||||||||||||||||   |||||| |||||||||||| |||||||  | || || |  |||||| | |||||||||||||||| || |||  | ||      
T  6585308 gagtgtttcatcatcaacctttgtatctgacaagttcaatacctccaactgggtaactaaaaagtttattccaagtagcttcactcttgaacacccagta 6585209  T
Q  101 aagttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttc 150  Q
    |||||||| || ||||| ||| |||||   |||||||| | ||||||||||||    
T  6585208 aagttcaaatgcctaatattaaaacatctccttaaaacatgacaaataccttc 6585156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 10579807 - 10579750
Alignment:
Q  1 gagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatt 58  Q
    |||||||| ||||||||   |||||| ||||||||||||||||||||| | |||||||    
T  10579807 gagtgttttatcatcaacttttgtatatgacaagttcaacacctccagctggggaatt 10579750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 14802364 - 14802429
Alignment:
Q  1 gagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagtt 66  Q
    |||||||||||||||||   |||||| |||||| |||||||| ||||  ||||||| |||||||||    
T  14802364 gagtgtttcatcatcaacctttgtatttgacaaattcaacacttccatcttgggaacttcaaagtt 14802429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 13470783 - 13470581
Alignment:
Q  21 ttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatctt 120  Q
    |||||| ||||||||||||||||||||| |||||||   ||||||||| |||||||||||||||||||  || |   ||||||||||| || ||||||||    
T  13470783 ttgtatttgacaagttcaacacctccagattgggaacaacaaagttcattccaagtagcttcacttttttacaataggctaagttcaaatgcctaatctt 13470684  T
Q  121 acaacat---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaatcgaagaaaatatt 217  Q
    |||||||   |||||||||| ||||||||||   | ||||| |  | |||||  | ||||||||||||| ||||||||||||||| | |||| ||| |||    
T  13470683 acaacatatccttaaaacttgacaaatacct---tttgataagagattgcaacaattcaaatcaagcagctgcaaattggggaaattggaagcaaacatt 13470587  T
Q  218 ttgatg 223  Q
     |||||    
T  13470586 atgatg 13470581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 51113852 - 51113619
Alignment:
Q  1 gagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagct 100  Q
    |||||||||||||||||   |||||| ||||||||  ||||||||||||||||||  ||||||||||| |||||||||||||| |||| |||    ||||    
T  51113852 gagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagtttgggagcttcaaagttcattccaagtagcttcagttttgaacagtaagct 51113753  T
Q  101 aagttcaactgtctaatcttacaacatc---ttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattgg 197  Q
    || ||||| || ||||| ||||||||||   ||||||||| |||||||||||||   |||||  ||  ||||| | | |||||||| || |||| |||||    
T  51113752 aatttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttcg---gatatctcatagcaatgagttaaatcaagaagctgcagattgg 51113656  T
Q  198 ggaaaatcgaagaaaatattttgatggtttcatctct 234  Q
    ||||||| |||| ||  ||| ||||| | ||||||||    
T  51113655 ggaaaatggaagcaatcattatgatgctctcatctct 51113619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 6 - 129
Target Start/End: Complemental strand, 51120959 - 51120836
Alignment:
Q  6 tttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagtt 105  Q
    ||||||||||||  |||||||| ||||||||||||||||||| |||| ||| ||||||||||| |||| | || |||||| || ||| ||  |  |||||    
T  51120959 tttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcagtttcactcttgaacaaccggtgaagtt 51120860  T
Q  106 caactgtctaatcttacaacatct 129  Q
    ||| |||||||| |||||||||||    
T  51120859 caagtgtctaatgttacaacatct 51120836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 51764511 - 51764281
Alignment:
Q  1 gagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaac-tacgagc 99  Q
    |||||||| ||||||||   |||||  ||||||||  ||||||||||| || |||| | ||||||||| |||||||||||||||| || ||| | || |     
T  51764511 gagtgttttatcatcaacttttgtaaatgacaagtctaacacctccagcttcggaactgcaaagttcattccaagtagcttcactcttgaacattcg-ga 51764413  T
Q  100 taagttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattg 196  Q
    || |||||| || ||||||||| |||||   |||||||||||||| | ||||   |  ||||||| | |||||  | | ||||||||||| |||||||||    
T  51764412 taggttcaaatgcctaatcttagaacatctccttaaaacttcacagacacct---ttagatatgcgattgcaagaattaaaatcaagcagctgcaaattg 51764316  T
Q  197 gggaaaatcgaagaaaatattttgatggtttcatc 231  Q
    |||||||| |||| ||| ||| ||||| |||||||    
T  51764315 gggaaaatggaagcaaacattatgatgctttcatc 51764281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 1657306 - 1657346
Alignment:
Q  28 tgacaagttcaacacctccagtttgggaatttcaaagttca 68  Q
    |||||||| |||||||||||||||||||| |||||||||||    
T  1657306 tgacaagtccaacacctccagtttgggaacttcaaagttca 1657346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 27005831 - 27005791
Alignment:
Q  13 atcaatacttgtatgtgacaagttcaacacctccagtttgg 53  Q
    |||||| |||||||||||||||||||| |||||||||||||    
T  27005831 atcaattcttgtatgtgacaagttcaagacctccagtttgg 27005791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 33714918 - 33714861
Alignment:
Q  9 catcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagtt 66  Q
    |||||||||| ||||  | ||||||||||| |||||||||||||| || |||||||||    
T  33714918 catcatcaattcttgagtttgacaagttcagcacctccagtttggaaacttcaaagtt 33714861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 36811086 - 36811046
Alignment:
Q  13 atcaatacttgtatgtgacaagttcaacacctccagtttgg 53  Q
    |||||| |||| ||| |||||||||||||||||||||||||    
T  36811086 atcaattcttgaatgggacaagttcaacacctccagtttgg 36811046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 232
Target Start/End: Complemental strand, 41889624 - 41889391
Alignment:
Q  2 agtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagcta 101  Q
    ||||||||||||||||   |||||| ||| |||||||||||||||| |||||||| || |||||||| | |||||||||||||| || |||  |  | ||    
T  41889624 agtgtttcatcatcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcatttcaagtagcttcactattgaacatccggata 41889525  T
Q  102 agttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggg 198  Q
    ||||||| | |||||| |||||||||   |||||||||| |  ||||||||| ||  |||||| ||  |||||  |||||||||| || |||||||| ||    
T  41889524 agttcaaatatctaatgttacaacatatccttaaaacttgagtaataccttcatcaaatatgcgacaacaattgctcaaatcaagtagctgcaaattagg 41889425  T
Q  199 gaaaatcgaagaaaatattttgatggtttcatct 232  Q
    |||||| |||| ||| ||| |||||  |||||||    
T  41889424 gaaaatggaagcaaacattatgatgtcttcatct 41889391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 129
Target Start/End: Complemental strand, 20478150 - 20478025
Alignment:
Q  4 tgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaag 103  Q
    |||||| ||||||| | |||||| ||||||||||||||||||||| | ||||||| ||| ||| | ||||||||||||| || ||  ||  | |||||||    
T  20478150 tgtttcgtcatcaacatttgtatatgacaagttcaacacctccagctggggaattacaacgtttattccaagtagcttcgctcttcgacatccagctaag 20478051  T
Q  104 ttcaactgtctaatcttacaacatct 129  Q
    ||||| || || | ||||||||||||    
T  20478050 ttcaaatgccttaacttacaacatct 20478025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 41901605 - 41901542
Alignment:
Q  2 agtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagt 65  Q
    |||| |||||||||||   |||||| ||||||||||||||||||||||||||||| ||||||||    
T  41901605 agtgcttcatcatcaacttttgtatatgacaagttcaacacctccagtttgggaacttcaaagt 41901542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 197
Target Start/End: Original strand, 32267504 - 32267699
Alignment:
Q  2 agtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagcta 101  Q
    |||| |||||||||||   |||| |||||||||||||| ||||||| |||||||| ||||||||||| | |   ||| |||||| || |||   | | ||    
T  32267504 agtgcttcatcatcaactattgtttgtgacaagttcaatacctccaatttgggaacttcaaagttcatttc---tagtttcactgttgaacactgggata 32267600  T
Q  102 agttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattgg 197  Q
    ||||||| |||||||| |||||||||   ||||||| || |   |||||||| || ||||||| ||  |||||  ||||||||||||| ||||||||||    
T  32267601 agttcaaatgtctaatgttacaacatatccttaaaaattgaacgataccttcttcagatatgcgacaacaattgctcaaatcaagcagctgcaaattgg 32267699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 100 - 209
Target Start/End: Complemental strand, 41901510 - 41901398
Alignment:
Q  100 taagttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattg 196  Q
    ||||||||| |||||||| ||||||||    |||||||||| |  ||||||||| ||  |||||| ||  |||||  ||||||||||||| |||||||||    
T  41901510 taagttcaaatgtctaatgttacaacacatccttaaaacttgaacaataccttcttcaaatatgcgacaacaattgctcaaatcaagcagctgcaaattg 41901411  T
Q  197 gggaaaatcgaag 209  Q
    |||||||| ||||    
T  41901410 gggaaaatggaag 41901398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 23 - 202
Target Start/End: Original strand, 10614643 - 10614822
Alignment:
Q  23 gtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttac 122  Q
    |||| ||||||||||||||||||||| |||||||   ||| ||||| |||||||||||||||||||  || |   ||||||||||| || ||||||||||    
T  10614643 gtatttgacaagttcaacacctccagattgggaacaacaacgttcattccaagtagcttcacttttttacaataggctaagttcaaatgcctaatcttac 10614742  T
Q  123 aacat---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaa 202  Q
    |||||   |||||||||| |||||||||||| |   ||| |  | |||||  | |||||||||||||||||||||||||||||    
T  10614743 aacatatccttaaaacttgacaaataccttcat---ataagagattgcaacgattcaaatcaagcagttgcaaattggggaaa 10614822  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 149
Target Start/End: Complemental strand, 15092195 - 15092071
Alignment:
Q  28 tgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat 127  Q
    |||||| |||||||||||||| | ||||| | ||||||||| |||| |||| |||||  ||||||  | || ||||||||| ||| ||| |||| |||||    
T  15092195 tgacaaattcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacacttaaacatccagttaagttcaaatgtttaagcttataacat 15092096  T
Q  128 ---cttaaaacttcacaaatacctt 149  Q
       |||||||||| | |||||||||    
T  15092095 ttccttaaaacttgagaaatacctt 15092071  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 234
Target Start/End: Complemental strand, 32785842 - 32785610
Alignment:
Q  2 agtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagcta 101  Q
    |||| |||||||||||| |||||||||||||||||||||||||| |||||||||  || |||||||| || | |  |||  | | || ||    |  | |    
T  32785842 agtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagctttaaagttcattcgacggtgctcgattcttgaaaagtggtcca 32785743  T
Q  102 agttcaactgtctaatcttacaacatcttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaa 201  Q
    | ||||| |||||||||||| |||||||||||| || |||||||||||| || ||||||  |  |||||   |||||||||| |||||||||||||  ||    
T  32785742 aattcaaatgtctaatcttagaacatcttaaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgcaaattggaaaa 32785643  T
Q  202 aatcgaagaaaatattttgatggtttcatctct 234  Q
    ||| |||||||| ||  ||||| ||||||||||    
T  32785642 aatagaagaaaacatcctgatgctttcatctct 32785610  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 1037735 - 1037503
Alignment:
Q  1 gagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacga-gc 99  Q
    ||||||||||||||||| || ||||||||||||||| |||||||| | ||  |||| || |||||| | || |||||| |||||| || || ||  | ||    
T  1037735 gagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagtttcactcttgaa-tagtaggc 1037637  T
Q  100 taagttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattg 196  Q
    ||| ||||| ||||||| ||||||||||   ||||||||||||||||||||||| || ||||||  |  |||     |||||||||| | ||||||||||    
T  1037636 taaattcaaatgtctaaccttacaacatctccttaaaacttcacaaataccttcttcagatatgttatggcaggagctcaaatcaagaaattgcaaattg 1037537  T
Q  197 gggaaaatcgaagaaaatattttgatggtttcat 230  Q
    |||||||| |||| ||| | | ||||| ||||||    
T  1037536 gggaaaatggaagcaaacaatatgatgttttcat 1037503  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 45245156 - 45245091
Alignment:
Q  1 gagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagtt 66  Q
    |||||||||||||||||   |||| | |||||| ||||||||||| ||||| |||| |||||||||    
T  45245156 gagtgtttcatcatcaaccattgtctctgacaaattcaacacctcaagttttggaacttcaaagtt 45245091  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 19468569 - 19468486
Alignment:
Q  2 agtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcact 85  Q
    ||||||||||||||||   |||||| |||||| |||||||||||||| ||||||| | ||||||||| ||||||||| ||||||    
T  19468569 agtgtttcatcatcaacctttgtatctgacaacttcaacacctccagcttgggaactacaaagttcactccaagtagattcact 19468486  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 52082612 - 52082676
Alignment:
Q  4 tgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 68  Q
    |||||||||||||||  |||| | |||||||||||||||||||| ||||| || || ||||||||    
T  52082612 tgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttca 52082676  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 231
Target Start/End: Complemental strand, 19468397 - 19468340
Alignment:
Q  174 tcaaatcaagcagttgcaaattggggaaaatcgaagaaaatattttgatggtttcatc 231  Q
    ||||||||||||| ||||||||||| ||||| |||| ||| ||| ||||| |||||||    
T  19468397 tcaaatcaagcagctgcaaattgggaaaaatggaagcaaacattatgatgttttcatc 19468340  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 9581276 - 9581332
Alignment:
Q  178 atcaagcagttgcaaattggggaaaatcgaagaaaatattttgatggtttcatctct 234  Q
    ||||||||| ||||||||||||||||| |||| ||| ||| ||||| ||| ||||||    
T  9581276 atcaagcagctgcaaattggggaaaattgaagcaaacattatgatgtttttatctct 9581332  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 9586844 - 9586900
Alignment:
Q  178 atcaagcagttgcaaattggggaaaatcgaagaaaatattttgatggtttcatctct 234  Q
    ||||||||| ||||||||||||||||| |||| ||| ||| ||||| ||| ||||||    
T  9586844 atcaagcagctgcaaattggggaaaattgaagcaaacattatgatgtttttatctct 9586900  T

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Target: scaffold0295 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 695 - 533
Alignment:
Q  1 gagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagct 100  Q
    ||||||||||||||| | |||||||||||||||||| |||||||| | ||  |||| || |||||| | || |||||| |||||| || |||     |||    
T  695 gagtgtttcatcatcgacacttgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagtttcactcttgaacagtaggct 596  T
Q  101 aagttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttcgtctgatatg 160  Q
    || ||||| ||||||  ||||||||||   |||| |||||||||||||||||| || ||||||    
T  595 aaattcaaatgtctagccttacaacatctccttagaacttcacaaataccttcttcagatatg 533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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