View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20929_high_27 (Length: 215)
Name: NF20929_high_27
Description: NF20929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20929_high_27 |
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Alignment Details
Target: chr7 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 83 - 197
Target Start/End: Complemental strand, 26280256 - 26280141
Alignment:
| Q |
83 |
gaaactaacatgatagtttgttaaatttttcacgtgtgatctgcaactagagttaatgacttcaaattcattatgctatgctttatctc--tgaagtgtg |
180 |
Q |
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| T |
26280256 |
gaaactaacatgatagtttgttaaatttttcacgtgtgatctgcaactagagttaatgacttcaaattcattatgctatgctttatctcttttaagtg-g |
26280158 |
T |
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| Q |
181 |
tcattcaccacatgctt |
197 |
Q |
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||||||||||||||||| |
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| T |
26280157 |
tcattcaccacatgctt |
26280141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 86 - 197
Target Start/End: Complemental strand, 26284832 - 26284721
Alignment:
| Q |
86 |
actaacatgatagtttgttaaatttttcacgtgtgatctgcaactagagttaatgacttcaaattcattatgctatgctttatctctgaagtgtgtcatt |
185 |
Q |
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|||||||||||||||| |||||||||||| || || |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
26284832 |
actaacatgatagtttcgtaaatttttcacaagtaatttgcaactagaattaatgacttcaaattcattatgctatgctttatctctcaagtgtgtcatt |
26284733 |
T |
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| Q |
186 |
caccacatgctt |
197 |
Q |
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||||||| |||| |
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| T |
26284732 |
caccacaggctt |
26284721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 78 - 169
Target Start/End: Original strand, 39186966 - 39187057
Alignment:
| Q |
78 |
ttgacgaaactaacatgatagtttgttaaatttttcacgtgtgatctgcaactagagttaatgacttcaaattcattatgctatgctttatc |
169 |
Q |
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| T |
39186966 |
ttgatgaaactaacgtgatagtttggtaaatttttcaggtgtgatctgcaactagagttaataacttcaaattcattatgttatgctttatc |
39187057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 187
Target Start/End: Original strand, 27004323 - 27004369
Alignment:
| Q |
141 |
acttcaaattcattatgctatgctttatctctgaagtgtgtcattca |
187 |
Q |
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||||||||| |||||| |||||||||||||| |||||||||||||| |
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| T |
27004323 |
acttcaaatatattatggtatgctttatctctcaagtgtgtcattca |
27004369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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