View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20929_high_3 (Length: 431)
Name: NF20929_high_3
Description: NF20929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20929_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 18 - 421
Target Start/End: Original strand, 38000131 - 38000534
Alignment:
| Q |
18 |
ctaataacttggcttagttgctttacttgtgtgagaaataggagaaaacccatttgcacaaaaataggagaaaaccgtgttcattcaatacagggggaag |
117 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38000131 |
ctaataacttggcttagtggctttacttgtgtgagaaataggagaaaacccatttgcacaaaaataggagaaaaccgtgttcattcaatacagggggaag |
38000230 |
T |
|
| Q |
118 |
aaaggagaacaaaaatattagttgcacaatgtagcaaattgctttgcataaaaataagagaaaaccgtgttcattcaataacagaccatgatatattttc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38000231 |
aaaggagaacaaaaatattagttgcacaatgtagcaaattgctttgcataaaaataagagaaaaccgtgttcattcaataacagaccatgatatattttc |
38000330 |
T |
|
| Q |
218 |
tgtcttctcttgcttatacaattttcttccacaatttcccttctctcaattaagacacattttcttcaatcgaccaaattttccttctctctcaccatgc |
317 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38000331 |
tgtcttctcttgctcatacaattttcttccacaatttcccttctctcaattaagacacattttcttcaatctaccaaattttccttctctctcaccatgc |
38000430 |
T |
|
| Q |
318 |
ctcaagagtcaagacaatcattgattaactaaatctcattcaattaccatgctcctcgccattcactccatcattccatgatatttgtattggatgcctc |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38000431 |
ctcaagagtcaagacaatcattgattaactaaatctcattcaattaccatgctcctcgccattcactccatcattccatgatatttgtattggttgcctt |
38000530 |
T |
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| Q |
418 |
tgtg |
421 |
Q |
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|||| |
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| T |
38000531 |
tgtg |
38000534 |
T |
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