View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20929_high_5 (Length: 326)
Name: NF20929_high_5
Description: NF20929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20929_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 8 - 310
Target Start/End: Original strand, 25487827 - 25488129
Alignment:
| Q |
8 |
gagcagagaaatgttttccgtcaacaagaagctattccggtttgagtgaggatctattaaaattcattaacagtctagacatgttacgaagggcattagg |
107 |
Q |
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| T |
25487827 |
gagcagagaaatgttttccgtcaacaagaagctattccggtttgagtgaggatctattaaaattcattaacagtctagacatgttacgaagggcattagg |
25487926 |
T |
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| Q |
108 |
atgctcaatataaggatgggtgggttgatataatttaagttggaaggtgtgttatattggataatcgcttttatcctttttcaaggagatggtgattctg |
207 |
Q |
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| T |
25487927 |
atgctcaatataaggatgggtgggttgatataatttaagttggaaggtgtgttatattggataatcggttttatcctttttcaaggagatggtgattctg |
25488026 |
T |
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| Q |
208 |
taccatataatttgatctcaagtttaggatctaacaagttattgaaaaggagttgtcatggataattggttttgcttatagatatacaaagtgagttctg |
307 |
Q |
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| T |
25488027 |
taccatataatttgatctcaagtttaggatctaacaagttattgaaaaggagttgtcatggataattggttttgcttatagatatacaaagtgagttctg |
25488126 |
T |
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| Q |
308 |
aag |
310 |
Q |
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| T |
25488127 |
aag |
25488129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 277
Target Start/End: Original strand, 16103016 - 16103069
Alignment:
| Q |
224 |
ctcaagtttaggatctaacaagttattgaaaaggagttgtcatggataattggt |
277 |
Q |
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| T |
16103016 |
ctcaaatttaggatctaacaagttattgaaaagacgttgtcaaggataattggt |
16103069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 301
Target Start/End: Original strand, 14656316 - 14656390
Alignment:
| Q |
227 |
aagtttaggatctaacaagttattgaaaaggagttgtcatggataattggttttgcttatagatatacaaagtga |
301 |
Q |
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| T |
14656316 |
aagtttaggatctaacaagtcattgcaaagaggttgtcaagaataattggttttgattatggatattaaaagtga |
14656390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 277
Target Start/End: Original strand, 27004931 - 27005001
Alignment:
| Q |
207 |
gtaccatataatttgatctcaagtttaggatctaacaagttattgaaaaggagttgtcatggataattggt |
277 |
Q |
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| T |
27004931 |
gtaccatattatctaacctcaagtttaggatctaacaagttattgaagagacattgtcaaggataattggt |
27005001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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