View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20929_low_2 (Length: 479)
Name: NF20929_low_2
Description: NF20929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20929_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Complemental strand, 35147517 - 35147047
Alignment:
| Q |
1 |
tgaaagaagcttgcacacagacataactaaaacatcaaaatcaannnnnnnagacctaaagcaaccagccaacaactgcatagctatctgagcaaacatg |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35147517 |
tgaaagaagcttgcacacaaacataactaaaacatcaaaatcaatttttttagacctaaagcaaccagccaacaactgcatagctatctgagcaaacatg |
35147418 |
T |
|
| Q |
101 |
aaataaaaaccgcatagtcgaagactttttaagttcaaaatacctgtgaaaaccattcaaaaattgaatatataggagtatgtattcaaaactgcatagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35147417 |
aaataaaaaccgcatagtcgaagactttttaagttcaacatacctgtgaaaaccattcaaaacttgaatatataggagtatgtattcaaaactgcatagt |
35147318 |
T |
|
| Q |
201 |
cactttcaagtctacaataccggtgaaaaccattaaaagcttgaacatctacaacactaccagacaactaattcgcaatgcatgtttcagtctaaaaagt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35147317 |
cactttcaagtctacaataccggtgaaaaccattaaaagcttgaacgtctacaacactaccagacaactaattcgcaatgcatgtttcagtctaaaaagt |
35147218 |
T |
|
| Q |
301 |
caaacatatttttacatgacagtagtaagacaaacatattcttgaacgtctgcaacattcagtgaatctcacataccaatagtaagtgtcccaagacagc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35147217 |
caaacatatttttacatgacagtagtaagacaaacatattcttgaacgtctacaatattcagtgaatctcacataccaatagtaagtgtcccaagacagc |
35147118 |
T |
|
| Q |
401 |
atgctcaaagggtgagattatccatgttcttgatgttactggagattccatgaactgaccgcccttcttct |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35147117 |
atgctcaaagggtgagattatccatgttcttgatgttactggagattccatgaactgaccgcccttcttct |
35147047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 52 - 312
Target Start/End: Original strand, 14864211 - 14864471
Alignment:
| Q |
52 |
agacctaaagcaaccagccaacaactgcatagctatctgagcaaacatgaaataaaaaccgcatagtcgaagactttttaagttcaaaatacctgtgaaa |
151 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||| |||| ||||||||||||| |
|
|
| T |
14864211 |
agacctaaagcaaccggccaacaactgcatagctatccgagcaaacatgaaataaaaatcgcatagttgaagactttttaaattcacaatacctgtgaaa |
14864310 |
T |
|
| Q |
152 |
accattcaaaaattgaatatataggagtatgtattcaaaactgcatagtcactttcaagtctacaataccggtgaaaaccattaaaagcttgaacatcta |
251 |
Q |
| |
|
||||||||||| ||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||| |
|
|
| T |
14864311 |
accattcaaaacttgaatatacaggagtatatattcaaaacttcatagtcactttcaagtctacaatatcggtgaaaaccattaaaagcatgaacgtcta |
14864410 |
T |
|
| Q |
252 |
caacactaccagacaactaattcgcaatgcatgtttcagtctaaaaagtcaaacatatttt |
312 |
Q |
| |
|
||||||||| ||||| ||||||| |||||||||||||||| ||||| || ||||||||||| |
|
|
| T |
14864411 |
caacactacaagacagctaattcacaatgcatgtttcagtataaaatgtaaaacatatttt |
14864471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 15324435 - 15324167
Alignment:
| Q |
1 |
tgaaagaagcttgcacacagacataactaaaacatcaaaatcaannnnnnn-agacctaaagcaaccagccaacaactgcatagctatctgagcaaacat |
99 |
Q |
| |
|
||||||||| || |||||| ||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
15324435 |
tgaaagaaggttccacacaaacataactaaaacatcaaaattaattggttttagacctaaagcaaccagctaacaactgcatagctatctgagcaaaaat |
15324336 |
T |
|
| Q |
100 |
gaaataaaaaccgcatagtcgaagactttttaagttcaaaatacctgtgaaaaccattcaaaaattgaatatataggagtatgtattcaaaactgcatag |
199 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||| || || |||||||||||| ||||||||||||||||| |
|
|
| T |
15324335 |
aaaataaaaaccgcataatcgaagacttttaaagttcacaatacctgtgaaaaccattcaaaacttaaacatataggagtatatattcaaaactgcatag |
15324236 |
T |
|
| Q |
200 |
tcactttcaagtctacaataccgg-------tgaaaaccattaaaagcttgaacatctacaacactacca |
262 |
Q |
| |
|
|| ||||||||||| | || || | |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
15324235 |
tctctttcaagtct-cgatgccagtgaaaactgaaaaccattaaaagcttgaatgtctacaacactacca |
15324167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 52 - 262
Target Start/End: Complemental strand, 15374721 - 15374506
Alignment:
| Q |
52 |
agacctaaagcaaccagccaacaactgcatagctatctgagcaaacatgaaataaaaaccgcatagtcgaagactttttaagttcaaaatacctgtgaaa |
151 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||| || | ||||||||||| | |
|
|
| T |
15374721 |
agacctaaagcaaccagc-aacaactgcatagttatacgagtaaacatgaaataaaaaccgcatagtcgaagactttttaatttgacaatacctgtgaca |
15374623 |
T |
|
| Q |
152 |
accattcaaaaattgaatatataggagtatgtattcaaaactgcatagtcactttcaagtctacaataccgg-------tgaaaaccattaaaagcttga |
244 |
Q |
| |
|
||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||| | ||||| | ||||||||||||||||||||| |
|
|
| T |
15374622 |
accattcaaaacttgatcatataggagtatatattcaaaactgcatagtcactttcaagtct-cgataccagtgaaaattgaaaaccattaaaagcttga |
15374524 |
T |
|
| Q |
245 |
acatctacaacactacca |
262 |
Q |
| |
|
|| ||||||||||||||| |
|
|
| T |
15374523 |
acttctacaacactacca |
15374506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 15372633 - 15372901
Alignment:
| Q |
1 |
tgaaagaagcttgcacacagacataactaaaacatcaaaatcaannnnnnn-agacctaaagcaaccagccaacaactgcatagctatctgagcaaacat |
99 |
Q |
| |
|
||||||||| || |||||| |||||| |||||||||||||| || ||||||||||||||| || ||||||| |||||||||| |||||||||| |
|
|
| T |
15372633 |
tgaaagaaggttccacacaaacataaataaaacatcaaaattaattagttttagacctaaagcaaccggcaaacaactacatagctatccgagcaaacat |
15372732 |
T |
|
| Q |
100 |
gaaataaaaaccgcatagtcgaagactttttaagttcaaaatacctgtgaaaaccattcaaaaattgaatatataggagtatgtattcaaaactgcatag |
199 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||||| |||| ||||| ||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
15372733 |
gaaataaaaactgcatagtcgaagactttttaagttcacaatacctgaaaaaatcattctaaacttgaatatataggagtatatattcaaaactgcatag |
15372832 |
T |
|
| Q |
200 |
tcactttcaagtctacaataccgg-------tgaaaaccattaaaagcttgaacatctacaacactacca |
262 |
Q |
| |
|
||||||||||||| | |||| | ||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
15372833 |
ccactttcaagtct-cgatactagtgaaaactgaaaaccattaaaagcttgaacgtatacaacactacca |
15372901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 14 - 262
Target Start/End: Original strand, 15352217 - 15352472
Alignment:
| Q |
14 |
cacacagacataactaaaacatcaaaatcaannnnnnn-agacctaaagcaaccagccaacaactgcatagctatctgagcaaacatgaaataaaaaccg |
112 |
Q |
| |
|
|||||| ||||||||||||||||||||| || ||||||||||||||| || |||||||||||| ||||| | |||||||||||||||| || |
|
|
| T |
15352217 |
cacacaaacataactaaaacatcaaaattaatttgttttagacctaaagcaaccggctaacaactgcataactatccaaaaaaacatgaaataaaaatcg |
15352316 |
T |
|
| Q |
113 |
catagtcgaagactttttaagttcaaaatacctgtgaaaaccattcaaaaattgaatatataggagtatgtattcaaaactgcatagtcactttcaagtc |
212 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||||||| ||||| ||||| || ||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
15352317 |
catagtcgaagacttttaaagttcacaatacctgtgaaaaccatccaaaacttgaacatttaggagtatatattcaaaactccatagtcactttcaagtc |
15352416 |
T |
|
| Q |
213 |
tacaataccgg-------tgaaaaccattaaaagcttgaacatctacaacactacca |
262 |
Q |
| |
|
| | ||||| | ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
15352417 |
t-cgataccagtgaaaattgaaaaccattaaaagcttgaacgtctacaacactacca |
15352472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 15354574 - 15354362
Alignment:
| Q |
1 |
tgaaagaagcttgcacacagacataactaaaacatcaaaatcaannnnnnn-agacctaaagcaaccagccaacaactgcatagctatctgagcaaacat |
99 |
Q |
| |
|
||||||||| || |||||| |||||||||||| |||||||| || ||||||||||||||| || ||||||||||| ||||||||||||||||| |
|
|
| T |
15354574 |
tgaaagaaggttccacacaaacataactaaaaaatcaaaattaatttgttttagacctaaagcaaccggctaacaactgcattgctatctgagcaaacat |
15354475 |
T |
|
| Q |
100 |
gaaataaaaaccgcatagtcgaagactttttaagttcaaaatacctgtgaaaaccattcaaaaattgaatatataggagtatgtattcaaaactgcatag |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||||||||| |||| ||||| ||| ||||| |||||||||||| ||||||||||| || || |
|
|
| T |
15354474 |
gaaataaaaaccgcatagtcgaagacttttaaagttcacaatacctgtaaaaatcattc-aaacttgaacatataggagtatatattcaaaactacacag |
15354376 |
T |
|
| Q |
200 |
tcactttcaagtct |
213 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
15354375 |
tcactttcaagtct |
15354362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 15322047 - 15322312
Alignment:
| Q |
1 |
tgaaagaagcttgcacacagacataactaaaacatcaaaatcaannnnnnn-agacctaaagcaaccagccaacaactgcatagctatctgagcaaacat |
99 |
Q |
| |
|
||||||||| || |||||| | ||||||||||||||||||| || ||||||| | ||||| || |||||||||||||||||| |||||||||| |
|
|
| T |
15322047 |
tgaaagaaggttccacacaaaaataactaaaacatcaaaattaatttgttttagacctacaacaaccggctaacaactgcatagctatccgagcaaacat |
15322146 |
T |
|
| Q |
100 |
gaaataaaaaccgcatagtcgaagactttttaagttcaaaatacctgtgaaaaccattcaaaaattgaatatataggagtatgtattcaaaactgcatag |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||| |||||||||||| ||||||||||| |||| |
|
|
| T |
15322147 |
gaaataaaaaccgcatagtcgaagacttttaaagtttccaatacctgtgaaaaccattcaaaacttgaacatataggagtatatattcaaaactctatag |
15322246 |
T |
|
| Q |
200 |
tcactttcaagtctacaataccgg-------tgaaaaccattaaaagcttgaacatctacaacacta |
259 |
Q |
| |
|
| |||||||||||| | ||||| | |||||||||||||||| |||||| |||||||||||| |
|
|
| T |
15322247 |
ttactttcaagtct-cgataccagtgaaaactgaaaaccattaaaagtttgaacgtctacaacacta |
15322312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 69 - 174
Target Start/End: Original strand, 43282232 - 43282336
Alignment:
| Q |
69 |
ccaacaactgcatagctatctgagcaaacatgaaataaaaaccgcatagtcgaagactttttaagttcaaaatacctgtgaaaaccattcaaaaattgaa |
168 |
Q |
| |
|
|||||||||| | |||||| ||||||||||||| ||| ||| |||||||| ||||| ||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
43282232 |
ccaacaactgtagagctatttgagcaaacatgac-taagaactgcatagtcaaagacgttttaagttcacaatacctgtgaaaaccattcaaaacttgaa |
43282330 |
T |
|
| Q |
169 |
tatata |
174 |
Q |
| |
|
|||||| |
|
|
| T |
43282331 |
tatata |
43282336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 69 - 170
Target Start/End: Original strand, 43277818 - 43277918
Alignment:
| Q |
69 |
ccaacaactgcatagctatctgagcaaacatgaaataaaaaccgcatagtcgaagactttttaagttcaaaatacctgtgaaaaccattcaaaaattgaa |
168 |
Q |
| |
|
|||||||||| ||| |||| | |||||||||||| ||||||| ||||||| ||| ||||||||||||| |||| |||||||||||||| ||| ||||| |
|
|
| T |
43277818 |
ccaacaactgtatatctatttaagcaaacatgaa-taaaaacttcatagtcaaaggctttttaagttcacaatatctgtgaaaaccatttgaaacttgaa |
43277916 |
T |
|
| Q |
169 |
ta |
170 |
Q |
| |
|
|| |
|
|
| T |
43277917 |
ta |
43277918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 223 - 319
Target Start/End: Original strand, 43277949 - 43278046
Alignment:
| Q |
223 |
gtgaaaaccattaaaagcttgaacatctacaacactaccagacaactaattcgcaatgcatgtttcagtctaaaaa-gtcaaacatatttttacatga |
319 |
Q |
| |
|
|||||||| ||||||||| ||| ||||| |||||| || ||| |||| | |||||||||| ||||||||||||| || |||||||||||||||||| |
|
|
| T |
43277949 |
gtgaaaacaattaaaagcaagaatatctagaacactgtcaaacagctaacttgcaatgcatgcttcagtctaaaaatgttaaacatatttttacatga |
43278046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 223 - 319
Target Start/End: Original strand, 43282418 - 43282515
Alignment:
| Q |
223 |
gtgaaaaccattaaaagcttgaacatctacaacactaccagacaactaattcgcaatgcatgtttcagtctaaaaa-gtcaaacatatttttacatga |
319 |
Q |
| |
|
|||||||| ||||| |||||||| ||||| || ||| || ||| |||| | |||||||||| ||||||||||||| || |||||||||||| ||||| |
|
|
| T |
43282418 |
gtgaaaacaattaagagcttgaatatctagaagactgtcaaacagctaactggcaatgcatgcttcagtctaaaaaggttaaacatatttttgcatga |
43282515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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