View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20929_low_20 (Length: 244)
Name: NF20929_low_20
Description: NF20929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20929_low_20 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 504086 - 504313
Alignment:
| Q |
17 |
aaacacatctagctttagacaaatcattcaccaaacttcacagtacaaagagacataaagtcaacctgtttctaatagagcaatttcggttaacatacag |
116 |
Q |
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| T |
504086 |
aaacacatctaactttagacaaatcattcaccaaacttcacagtacaaagagacataaagtcaacctgtttctaatagagcaattccggttaacatacag |
504185 |
T |
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| Q |
117 |
ccttggatgaattcaactataaccatcaacctaccatatttttcttcttttacgcagagtgaagaataagagtggctacttttaaaagaaccgaaaacag |
216 |
Q |
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| T |
504186 |
ccttggatgaattcaactataaccatcaacctaccatatttttcttcttttacgcagagtgaagaataagagtggctacttttaaaagaaccgaaaacag |
504285 |
T |
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| Q |
217 |
caattacaacgaccaatattcgtatcat |
244 |
Q |
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| T |
504286 |
caattacaacaaccaatattcgtatcat |
504313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 48 - 168
Target Start/End: Original strand, 11791967 - 11792087
Alignment:
| Q |
48 |
caaacttcacagtacaaagagacataaagtcaacctgtttctaatagagcaatttcggttaacatacagccttggatgaattcaactataaccatcaacc |
147 |
Q |
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| T |
11791967 |
caaacttcacagtacaaagagacgtaaaatcaagttgtttctaatagagaaatttcggttaacataaaaccttggatgagtttaactacaaccatcaacc |
11792066 |
T |
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| Q |
148 |
taccatatttttcttctttta |
168 |
Q |
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| T |
11792067 |
taccatgtttttcttctttta |
11792087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 137
Target Start/End: Complemental strand, 12088179 - 12088115
Alignment:
| Q |
73 |
aaagtcaacctgtttctaatagagcaatttcggttaacatacagccttggatgaattcaactata |
137 |
Q |
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| T |
12088179 |
aaagtcaaccagtttcaaatagagcaattttggttaacataaaacctttgatgaattcaactata |
12088115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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