View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20929_low_24 (Length: 237)

Name: NF20929_low_24
Description: NF20929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20929_low_24
NF20929_low_24
[»] chr8 (1 HSPs)
chr8 (5-221)||(35147499-35147717)
[»] chr6 (11 HSPs)
chr6 (105-169)||(14864059-14864126)
chr6 (184-221)||(15321896-15321933)
chr6 (184-221)||(15324545-15324582)
chr6 (184-221)||(15374884-15374921)
chr6 (184-221)||(15372481-15372518)
chr6 (186-221)||(14863741-14863776)
chr6 (105-169)||(15324468-15324535)
chr6 (184-221)||(15352054-15352091)
chr6 (184-221)||(15354686-15354723)
chr6 (105-169)||(15352102-15352171)
chr6 (105-169)||(15372531-15372600)
[»] chr2 (1 HSPs)
chr2 (50-96)||(43282115-43282161)


Alignment Details
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 5 - 221
Target Start/End: Original strand, 35147499 - 35147717
Alignment:
Q  5 tgtgtgcaagcttctttcaaaaatgtttttgttaaacactgaattttatgctggaaatttgtaaattaaataaccattttgattagcttttg-nnnnnnn 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  35147499 tgtgtgcaagcttctttcaaaaatgtttttgttaaacactgaattttatgctggaaatttgtaaattaaataaccattttgattagcttttgaaaaaaaa 35147598  T
Q  104 nttaatacaaaagagagaaactatcttgatattta---tttttcaacttgaatgctttttaaactatagnnnnnnnnnnnnagaatctctaaagaattct 200  Q
     ||||||||||||||||||||||| ||||||||||   |||||||||||||||||||||||||||||||            |||||||||||||||||||    
T  35147599 attaatacaaaagagagaaactattttgatatttagagtttttcaacttgaatgctttttaaactatag--ttttttttttagaatctctaaagaattct 35147696  T
Q  201 tcaaattatttatatcaaact 221  Q
    |||||||||||||||||||||    
T  35147697 tcaaattatttatatcaaact 35147717  T

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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 105 - 169
Target Start/End: Complemental strand, 14864126 - 14864059
Alignment:
Q  105 ttaatacaaaagagagaaactatcttgatattta---tttttcaacttgaatgctttttaaactatag 169  Q
    ||||||||||||||||||||||| ||||||||||   |||| ||||||||||||||||||||||||||    
T  14864126 ttaatacaaaagagagaaactattttgatatttagagttttccaacttgaatgctttttaaactatag 14864059  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 15321933 - 15321896
Alignment:
Q  184 aatctctaaagaattcttcaaattatttatatcaaact 221  Q
    ||||||||||||||||||||||||||||||||||||||    
T  15321933 aatctctaaagaattcttcaaattatttatatcaaact 15321896  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 15324545 - 15324582
Alignment:
Q  184 aatctctaaagaattcttcaaattatttatatcaaact 221  Q
    ||||||||||||||||||||||||||||||||||||||    
T  15324545 aatctctaaagaattcttcaaattatttatatcaaact 15324582  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 15374884 - 15374921
Alignment:
Q  184 aatctctaaagaattcttcaaattatttatatcaaact 221  Q
    ||||||||||||||||||||||||||||||||||||||    
T  15374884 aatctctaaagaattcttcaaattatttatatcaaact 15374921  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 15372518 - 15372481
Alignment:
Q  184 aatctctaaagaattcttcaaattatttatatcaaact 221  Q
    |||||||||||||||||||||||||||||| |||||||    
T  15372518 aatctctaaagaattcttcaaattatttatgtcaaact 15372481  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 221
Target Start/End: Complemental strand, 14863776 - 14863741
Alignment:
Q  186 tctctaaagaattcttcaaattatttatatcaaact 221  Q
    |||||||||||||||||||| |||||||||||||||    
T  14863776 tctctaaagaattcttcaaaatatttatatcaaact 14863741  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 15324468 - 15324535
Alignment:
Q  105 ttaatacaaaagagagaaactatcttgatattta---tttttcaacttgaatgctttttaaactatag 169  Q
    |||||||||| |||||||| ||| | ||||||||   |||||||  ||||||||||||||||||||||    
T  15324468 ttaatacaaatgagagaaagtatttagatatttaatgtttttcattttgaatgctttttaaactatag 15324535  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 15352091 - 15352054
Alignment:
Q  184 aatctctaaagaattcttcaaattatttatatcaaact 221  Q
    ||||||| |||||||||| |||||||||||||||||||    
T  15352091 aatctcttaagaattctttaaattatttatatcaaact 15352054  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 15354686 - 15354723
Alignment:
Q  184 aatctctaaagaattcttcaaattatttatatcaaact 221  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  15354686 aatctctaaagaattcttcaagttacttatatcaaact 15354723  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 169
Target Start/End: Complemental strand, 15352171 - 15352102
Alignment:
Q  105 ttaatacaaaagagaga--aactatcttgatattta---tttttcaacttgaatgctttttaaactatag 169  Q
    |||||||||||||||||  || ||| ||||||||||   |||||||  ||||||||||||||||||||||    
T  15352171 ttaatacaaaagagagataaagtattttgatatttagagtttttcattttgaatgctttttaaactatag 15352102  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 169
Target Start/End: Complemental strand, 15372600 - 15372531
Alignment:
Q  105 ttaatacaaaagagagaaac--tatcttgatattta---tttttcaacttgaatgctttttaaactatag 169  Q
    ||||||||||||||||| ||  ||| ||||||||||   |||||||  ||||||||||||||||||||||    
T  15372600 ttaatacaaaagagagatacaatattttgatatttagagtttttcatattgaatgctttttaaactatag 15372531  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 96
Target Start/End: Complemental strand, 43282161 - 43282115
Alignment:
Q  50 ttatgctggaaatttgtaaattaaataaccattttgattagcttttg 96  Q
    |||||||| ||||||| |||| ||||||||||||||||||| |||||    
T  43282161 ttatgctgaaaatttgaaaatgaaataaccattttgattagattttg 43282115  T

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