View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20929_low_25 (Length: 236)

Name: NF20929_low_25
Description: NF20929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20929_low_25
NF20929_low_25
[»] chr2 (8 HSPs)
chr2 (31-217)||(12063792-12063975)
chr2 (31-184)||(12050917-12051069)
chr2 (31-184)||(12073874-12074026)
chr2 (126-184)||(12066467-12066525)
chr2 (31-180)||(12046675-12046823)
chr2 (31-184)||(12053445-12053596)
chr2 (134-184)||(12058330-12058380)
chr2 (181-217)||(12066536-12066572)
[»] chr4 (1 HSPs)
chr4 (31-184)||(30353563-30353714)


Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 31 - 217
Target Start/End: Original strand, 12063792 - 12063975
Alignment:
Q  31 gaaatcatattgaaaaagcgaacaatctcatagttaaatattgagccaattacttttatataccactaatctttatgatctccgccacnnnnnnnctcaa 130  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||| |||||||||||||||||||       |||||    
T  12063792 gaaattatattgaaaaagcgaacaatctcatagttaaatattgagccaa---cttttatataccactattctttatgatctccgccactttttttctcaa 12063888  T
Q  131 ctttgtttcaattcaattatgagatttctaaatatcaatttaagaatgcttatgaggttgattgtaaagaatttgctacgttggaaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  12063889 ctttgtttcaattcaattatgagatttctaaatatcaatttaagaatgcttatgaggttgattgtaaagaatttgctgcgttggaaa 12063975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 31 - 184
Target Start/End: Original strand, 12050917 - 12051069
Alignment:
Q  31 gaaatcatattgaaaaagcgaacaatctcata--gttaaatattgagccaattacttttatataccactaatctttatgatctccgccacnnnnnnnctc 128  Q
    |||||||||||||||||| ||||||||||| |  |||||| | ||||||||   ||||||||||| |||| |||||||| |||| |||||       |||    
T  12050917 gaaatcatattgaaaaagtgaacaatctcacacagttaaaaaatgagccaa---cttttatatactactattctttatggtctctgccacgtttttcctc 12051013  T
Q  129 aactttgtttcaattcaattatgagatttctaaatatcaatttaagaatgcttatg 184  Q
    ||||||||| || ||||||||||| |||||||||||||| ||||||||||||||||    
T  12051014 aactttgttgcagttcaattatgatatttctaaatatcattttaagaatgcttatg 12051069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 31 - 184
Target Start/End: Original strand, 12073874 - 12074026
Alignment:
Q  31 gaaatcatattgaaaaagcgaacaatctcata--gttaaatattgagccaattacttttatataccactaatctttatgatctccgccacnnnnnnnctc 128  Q
    |||||||||||||||||| ||||||||||| |  |||||| ||||||||||   |||||||||||||||| |||||||| |||  || ||        ||    
T  12073874 gaaatcatattgaaaaagtgaacaatctcacacagttaaaaattgagccaa---cttttatataccactattctttatggtctttgcaacttttttcttc 12073970  T
Q  129 aactttgtttcaattcaattatgagatttctaaatatcaatttaagaatgcttatg 184  Q
    |||||||||||| ||||||||||  |||||||||||||||||||||||||||||||    
T  12073971 aactttgtttcagttcaattatggtatttctaaatatcaatttaagaatgcttatg 12074026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 12066467 - 12066525
Alignment:
Q  126 ctcaactttgtttcaattcaattatgagatttctaaatatcaatttaagaatgcttatg 184  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12066467 ctcaactttgtttcaattcaattatgatatttctaaatatcaatttaagaatgcttatg 12066525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 31 - 180
Target Start/End: Original strand, 12046675 - 12046823
Alignment:
Q  31 gaaatcatattgaaaaagcgaacaatctcata--gttaaatattgagccaattacttttatataccactaatctttatgatctccgccacnnnnnnnctc 128  Q
    |||||||||||||||||| ||||||||||| |  |||||| |||||| |||   ||||||||||| |||| |||||||| |||  |||||       |||    
T  12046675 gaaatcatattgaaaaagtgaacaatctcacacagttaaaaattgagtcaa---cttttatatactactattctttatggtctttgccacttttttcctc 12046771  T
Q  129 aactttgtttcaattcaattatgagatttctaaatatcaatttaagaatgct 180  Q
    |||  ||||||| || ||||||||||||||||||||||||||||||||||||    
T  12046772 aaccctgtttcagttaaattatgagatttctaaatatcaatttaagaatgct 12046823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 31 - 184
Target Start/End: Original strand, 12053445 - 12053596
Alignment:
Q  31 gaaatcatattgaaaaagcgaacaatctcata--gttaaatattgagccaattacttttatataccactaatctttatgatctccgccacnnnnnnnctc 128  Q
    ||||||||||||||||||  |||||||||| |  |||||| |||||| |||   |||||||||   |||| ||||||| |||||||||||       |||    
T  12053445 gaaatcatattgaaaaagtaaacaatctcacacagttaaaaattgagtcaa---cttttatatggtactattctttat-atctccgccacttttttcctc 12053540  T
Q  129 aactttgtttcaattcaattatgagatttctaaatatcaatttaagaatgcttatg 184  Q
    ||| |||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  12053541 aaccttgtttcagtttaattatgagatttctaaatatcaatttaagaatgcttatg 12053596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 134 - 184
Target Start/End: Original strand, 12058330 - 12058380
Alignment:
Q  134 tgtttcaattcaattatgagatttctaaatatcaatttaagaatgcttatg 184  Q
    ||||||| ||||||||||| ||||||||||||||||||| |||||||||||    
T  12058330 tgtttcagttcaattatgatatttctaaatatcaatttatgaatgcttatg 12058380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 12066536 - 12066572
Alignment:
Q  181 tatgaggttgattgtaaagaatttgctacgttggaaa 217  Q
    ||||||||||||| |||||||||||||||||||||||    
T  12066536 tatgaggttgattataaagaatttgctacgttggaaa 12066572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 31 - 184
Target Start/End: Complemental strand, 30353714 - 30353563
Alignment:
Q  31 gaaatcatattgaaaaagcgaacaatctcatagttaaatattgagccaattacttttatataccactaatctttatgatctccgccacnnnnnnnctcaa 130  Q
    ||||| |||||||||| | |||||||| |||||||||| ||||||||||   | |||||||| ||||| |||||||| |||| |||||       |||||    
T  30353714 gaaattatattgaaaaggtgaacaatcccatagttaaaaattgagccaa---cctttatatatcactattctttatggtctctgccacttgtctcctcaa 30353618  T
Q  131 ctttgtttcaattcaattatg-agatttctaaatatcaatttaagaatgcttatg 184  Q
    |  ||||||| ||||||| |  |||||||||||||||||||||||||| ||||||    
T  30353617 ccctgtttcagttcaattttttagatttctaaatatcaatttaagaattcttatg 30353563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University