View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20929_low_4 (Length: 360)
Name: NF20929_low_4
Description: NF20929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20929_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 13 - 345
Target Start/End: Original strand, 42593932 - 42594264
Alignment:
| Q |
13 |
tcatcatggggactcaaatagaccatgtcacccaccacaatatcagatacggtgagacgcacagctttggacgcttcacgtcttttaacattgaatttcc |
112 |
Q |
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| T |
42593932 |
tcatcatggggactcaaatagaccatgtcacccaccacaatatcagatacggtgagaggcacaggtttggacgcttcacgtcttttaacattgaatttcc |
42594031 |
T |
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| Q |
113 |
actgaccttttttctttgccagcttcatcattttccgctcacggcaaaagttagttattgaagagaatgcaatcagaagtagaagagcgaacaccatggc |
212 |
Q |
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| T |
42594032 |
actgaccttttttctttgcaagcttcatcattttccgctcacggcaaaagttagttattgaagagaatgcaatcagaagtagaagagcgaacaccatggc |
42594131 |
T |
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| Q |
213 |
aacaccatcatgccaaccatatttgggtccctcctgcttgaactctgtggcaaaggacaaaaaggctgaaatcagcagcattgaaattgtgtaaagattg |
312 |
Q |
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| T |
42594132 |
aacaccatcatgccaaccatatttgggtccctcctgcttgaactctgtggcaaaggacaaaaaggctgaaatcagcagcattgaaattgtgtaaagattg |
42594231 |
T |
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| Q |
313 |
tgcttgcagctattccatagaatgccaaagaag |
345 |
Q |
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| T |
42594232 |
tgcttgcagctattccatagaatgccagagaag |
42594264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 136 - 318
Target Start/End: Complemental strand, 4090732 - 4090550
Alignment:
| Q |
136 |
ttcatcattttccgctcacggcaaaagttagttattgaagagaatgcaatcagaagtagaagagcgaacaccatggcaacaccatcatgccaaccatatt |
235 |
Q |
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| T |
4090732 |
ttcatcattttcctatgacgccaaaagcttgttattgaagagaatgcaagcattagtagaacagaaaaagctatggcaacaccatcatgccaaccatact |
4090633 |
T |
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| Q |
236 |
tgggtccctcctgcttgaactctgtggcaaaggacaaaaaggctgaaatcagcagcattgaaattgtgtaaagattgtgcttg |
318 |
Q |
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| T |
4090632 |
tgagtccttcctccatgtatcctatggctaaggagaataaagctgaaatcagaagcaatgaaactgtgcaacgattgtccttg |
4090550 |
T |
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