View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20929_low_7 (Length: 304)
Name: NF20929_low_7
Description: NF20929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20929_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 5 - 281
Target Start/End: Complemental strand, 12053652 - 12053376
Alignment:
| Q |
5 |
aagatcactttttcaacttagcatattcttaataatcaacctcacattatatgttacataagcattcttaaattgatatgtagaaatctcataattaaac |
104 |
Q |
| |
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||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
12053652 |
aagatcactttttcaacttagcaaattctttataatcaacctcacattatatgttacataagcattcttaaattgatatttagaaatctcataattaaac |
12053553 |
T |
|
| Q |
105 |
tgaaacaaggttgaggaaaaaagtggcggagatataaagaatagtggtatataaaagttgactcaatttttaactgtgtgagattgtttactttttcaat |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12053552 |
tgaaacaaggttgaggaaaaaagtggcggagatataaagaatagtaccatataaaagttgactcaatttttaactgtgtgagattgtttactttttcaat |
12053453 |
T |
|
| Q |
205 |
atgatttcataccttctgccttcaagcagcattacaaatttcagagattctactgaaaaataaggtatgtgtgcctt |
281 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
12053452 |
atgatttcataccttctgccttcaagcagcattacatatttcagagattctactgaaaaataaggtatgtgtgcctt |
12053376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 31 - 281
Target Start/End: Complemental strand, 12051099 - 12050848
Alignment:
| Q |
31 |
tcttaataatcaacctcacattatatgttacataagcattcttaaattgatatgtagaaatctcataattaaactgaaacaaggttgaggaaaaaagtgg |
130 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||| |||||| ||||||| |||||||| ||||| ||||| |||||||||||| |||| |
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| T |
12051099 |
tctttataatcaacctcacattataagttacataagcattcttaaaatgatatttagaaatatcataattgaactgcaacaaagttgaggaaaaacgtgg |
12051000 |
T |
|
| Q |
131 |
cggagat-ataaagaatagtggtatataaaagttgactcaatttttaactgtgtgagattgtttactttttcaatatgatttcataccttctgccttcaa |
229 |
Q |
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| |||| |||||||||||| |||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
12050999 |
cagagaccataaagaatagtagtatataaaagttggctcattttttaactgtgtgagattgttcactttttcaatatgatttcataccttctgccttgaa |
12050900 |
T |
|
| Q |
230 |
gcagcattacaaatttcagagattctactgaaaaataaggtatgtgtgcctt |
281 |
Q |
| |
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||||||||||| |||||||| |||| |||| ||| |||||||||||||||| |
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| T |
12050899 |
gcagcattacatatttcagaaattccactgggaaaaaaggtatgtgtgcctt |
12050848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 5 - 223
Target Start/End: Complemental strand, 12074082 - 12073863
Alignment:
| Q |
5 |
aagatcactttttcaacttagcatattcttaataatcaacctcacattatatgttacataagcattcttaaattgatatgtagaaatctcataattaaac |
104 |
Q |
| |
|
|||||||||||| |||| ||||| |||||| ||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||| ||||||| ||| |
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| T |
12074082 |
aagatcacttttccaacgtagcaaattctttataatcaacatcacattataagttacataagcattcttaaattgatatttagaaataccataattgaac |
12073983 |
T |
|
| Q |
105 |
tgaaacaaggttgaggaaaaaagtggcggagat-ataaagaatagtggtatataaaagttgactcaatttttaactgtgtgagattgtttactttttcaa |
203 |
Q |
| |
|
|||||||| ||||| ||||||||| || ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
12073982 |
tgaaacaaagttgaagaaaaaagttgcaaagaccataaagaatagtggtatataaaagttggctcaatttttaactgtgtgagattgttcactttttcaa |
12073883 |
T |
|
| Q |
204 |
tatgatttcataccttctgc |
223 |
Q |
| |
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|||||||||||||||||||| |
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| T |
12073882 |
tatgatttcataccttctgc |
12073863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 5 - 281
Target Start/End: Complemental strand, 12066581 - 12066305
Alignment:
| Q |
5 |
aagatcactttttcaacttagcatattcttaataatcaacctcacattatatgttacataagcattcttaaattgatatgtagaaatctcataattaaac |
104 |
Q |
| |
|
||||||| |||| |||| ||||| |||||| ||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||| |||||||| || |
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| T |
12066581 |
aagatcaattttccaacgtagcaaattctttataatcaacctcatattataagttacataagcattcttaaattgatatttagaaatatcataattgaat |
12066482 |
T |
|
| Q |
105 |
tgaaacaaggttgaggaaaaaagtggcggaga-tataaagaatagtggtatataaaagttgactcaatttttaactgtgtgagattgtttactttttcaa |
203 |
Q |
| |
|
|||||||| ||||||||||||| |||| ||| ||| ||||| || ||||||||||||||||||||||||||||| ||| ||||| || || ||||||| |
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| T |
12066481 |
tgaaacaaagttgaggaaaaaaatggcaaagaccatatagaatcgtagtatataaaagttgactcaatttttaactctgttagattattcac-ttttcaa |
12066383 |
T |
|
| Q |
204 |
tatgatttcataccttctgccttcaagcagcattacaaatttcagagattctactgaaaaataaggtatgtgtgcctt |
281 |
Q |
| |
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|| ||||||| |||||||||||| ||||||||||||| |||||| | |||||||||| |||||||||||| ||||||| |
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| T |
12066382 |
tacgatttcaaaccttctgccttgaagcagcattacatatttcaaaaattctactgagaaataaggtatgcgtgcctt |
12066305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 28 - 219
Target Start/End: Complemental strand, 12046860 - 12046668
Alignment:
| Q |
28 |
tattcttaataatcaacctcacattatatgttacataagcattcttaaattgatatgtagaaatctcataattaaactgaaacaaggttgaggaaaaaag |
127 |
Q |
| |
|
||||||| ||||||||||||| |||||| ||||||| ||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||| |
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|
| T |
12046860 |
tattctttataatcaacctcatattataagttacatgagcattcttaaattgatatttagaaatctcataatttaactgaaacagggttgaggaaaaaag |
12046761 |
T |
|
| Q |
128 |
tggcggaga-tataaagaatagtggtatataaaagttgactcaatttttaactgtgtgagattgtttactttttcaatatgatttcatacctt |
219 |
Q |
| |
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|||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
12046760 |
tggcaaagaccataaagaatagtagtatataaaagttgactcaatttttaactgtgtgagattgttcactttttcaatatgatttcatacctt |
12046668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 5 - 240
Target Start/End: Complemental strand, 12058436 - 12058210
Alignment:
| Q |
5 |
aagatcactttttcaacttagcatattcttaataatcaacctcacattatatgttacataagcattcttaaattgatatgtagaaatctcataattaaac |
104 |
Q |
| |
|
|||||||||||| || | ||||| |||||| |||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||| |||||||| ||| |
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|
| T |
12058436 |
aagatcacttttccagcgtagcaaattctttataatcaacctcacattataagttacataagcattcataaattgatatttagaaatatcataattgaac |
12058337 |
T |
|
| Q |
105 |
tgaaacaaggttgaggaaaaaagtggcggagat-ataaagaatagtggtatataaaagttgactcaatttttaactgtgtgagattgtttactttttcaa |
203 |
Q |
| |
|
||||||| ||||||||| |||| |||||||||| |||||||||||||||| ||||||||| | |||| || ||||||| |||||||||| |
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|
| T |
12058336 |
tgaaacac---------aaaaagtggtagagaccataaagaatattggtatataaaagttggctcaattttga-ctgtatgggattgttcactttttcaa |
12058247 |
T |
|
| Q |
204 |
tatgatttcataccttctgccttcaagcagcattaca |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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| T |
12058246 |
tatgatttcataccttctgccttcaagcagcattaca |
12058210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 61 - 214
Target Start/End: Complemental strand, 12063942 - 12063790
Alignment:
| Q |
61 |
cataagcattcttaaattgatatgtagaaatctcataattaaactgaaacaaggttgaggaaaaaagtggcggagat-ataaagaatagtggtatataaa |
159 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| || |||||||| |||||| ||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
12063942 |
cataagcattcttaaattgatatttagaaatctcataattgaattgaaacaaagttgagaaaaaaagtggcggagatcataaagaatagtggtatataaa |
12063843 |
T |
|
| Q |
160 |
agttgactcaatttttaactgtgtgagattgtttactttttcaatatgatttcat |
214 |
Q |
| |
|
||||| |||||| |||||| | |||||||||| |||||||||||| ||||||| |
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|
| T |
12063842 |
agttggctcaatatttaac--tatgagattgttcgctttttcaatataatttcat |
12063790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 13 - 275
Target Start/End: Original strand, 30353515 - 30353777
Alignment:
| Q |
13 |
tttttcaacttagcatattcttaataatcaacctcacattatatgttacataagcattcttaaattgatatgtagaaatctcataa-ttaaactgaaaca |
111 |
Q |
| |
|
|||| |||| ||||| |||||| ||||||||||| | |||||| |||||||||| |||||||||||||||| ||||||||| | || || |||||||||| |
|
|
| T |
30353515 |
ttttccaacgtagcagattctttataatcaacctgaaattataagttacataagaattcttaaattgatatttagaaatctaaaaaattgaactgaaaca |
30353614 |
T |
|
| Q |
112 |
aggttgaggaaaaaagtggcggagat-ataaagaatagtggtatataaaagttgactcaatttttaactgtgtgagattgtttactttttcaatatgatt |
210 |
Q |
| |
|
||||||||| | ||||||| |||| ||||||||||||| |||||||| |||| |||||||||||||| || || ||||| || |||||||||| ||| |
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|
| T |
30353615 |
gggttgaggagacaagtggcagagaccataaagaatagtgatatataaaggttggctcaatttttaactatggga--ttgttcaccttttcaatataatt |
30353712 |
T |
|
| Q |
211 |
tcataccttctgccttcaagcagcattacaaatttcagagattctactgaaaaataaggtatgtg |
275 |
Q |
| |
|
|||||||||||| ||| ||||| |||| || |||||||| | |||||||| |||||||||||||| |
|
|
| T |
30353713 |
tcataccttctggcttgaagcaacattgcatatttcagaaactctactgagaaataaggtatgtg |
30353777 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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