View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2092_high_11 (Length: 350)
Name: NF2092_high_11
Description: NF2092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2092_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 9e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 33566063 - 33565753
Alignment:
| Q |
1 |
aagaatttctcaaataaaaactaaaatgtagagcaaacaaacagccgtcagcaggtaaagagaaatccatcggcaaaaggccactagaaaagtaatacca |
100 |
Q |
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|||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
33566063 |
aagaatttctcaaataaaaattagaatgtagagcaaacaaacagccgtcagcagataaagagaaatccatcggcaaaaggcccctagaaaaataatacca |
33565964 |
T |
|
| Q |
101 |
aaccattttttaataagattccnnnnnnnnnnnnnnnnnnagcaatgtaataagattcctaaactttcaaatcaaccaaaaaatgttattgataaaagaa |
200 |
Q |
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|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33565963 |
aaccattttttaataagattcc---ttttttttttttttgagcaatgtaattagattcctaaactttcaaatcaaccaaaaaatgttattgataaaagaa |
33565867 |
T |
|
| Q |
201 |
aggataagattccttttannnnnnngacnnnnnnnggataagattgctgtctaaaacaaaaaggataagat-tttaatttgtttgcttcaatcgtgaaat |
299 |
Q |
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|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33565866 |
aggataagattccttttatttttttgacaaaaaaaggataagattgctgtctaaaacaaaaaggataagatatttaatttgtttgcttcaatcgtgaaat |
33565767 |
T |
|
| Q |
300 |
tagagcaaaataat |
313 |
Q |
| |
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|||||||||||||| |
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| T |
33565766 |
tagagcaaaataat |
33565753 |
T |
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