View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2092_high_12 (Length: 304)
Name: NF2092_high_12
Description: NF2092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2092_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 25 - 292
Target Start/End: Original strand, 5967148 - 5967415
Alignment:
| Q |
25 |
ctaacagctttattgacagagaagtcaattgatttcataatcaggttttctagggcagggaaactttcttcctatggaaatcttatgggagatgcctatg |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5967148 |
ctaacagctttattgacagagaagtcaattgatttcataatcaggttttctagggcagggaaactttcttcctatggaaatcttatgggagatgcctatg |
5967247 |
T |
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| Q |
125 |
ggaaatacggaaaagcgtcgttggagatatgtgttttaactaccatcggtagtctgatcatgtacatgatcattattggtgagaccatattcttaagtct |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5967248 |
ggaaatacggaaaagcgtcgttggagatatgtgttttaactaccatcggtagtctgatcatgtacatgatcattattggtgagaccatattcttaagtct |
5967347 |
T |
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| Q |
225 |
agacttttactgttatcattagagaagaatttaaggttgtataattcaattttgtttttattcatatt |
292 |
Q |
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| T |
5967348 |
agacttttactgttatcattagagaagaatttaaggttgtataattcaattttgtttttgttcatatt |
5967415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 25 - 226
Target Start/End: Original strand, 5961638 - 5961842
Alignment:
| Q |
25 |
ctaacagctttattgacagagaagtcaattgatttcataatcaggttttctagggcagggaaactttcttcctatggaaatcttatgggagatgcctatg |
124 |
Q |
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|||||||| ||||||||||||||| ||||||| ||||| ||||||||||| || |||||||| |||||||||||||||| ||||||||||||| ||| || |
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| T |
5961638 |
ctaacagcattattgacagagaaggcaattgagttcatgatcaggttttcgagagcagggaatctttcttcctatggaagtcttatgggagatacctttg |
5961737 |
T |
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| Q |
125 |
ggaaatacggaaaagcgtcgttggagatatgtgtttta---actaccatcggtagtctgatcatgtacatgatcattattggtgagaccatattcttaag |
221 |
Q |
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| T |
5961738 |
ggaaatacggaaaagcactggtagagatatgtgttataatcactaacgttggtattctgattgtttacatgatcattattggtgagaccttattcttaag |
5961837 |
T |
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| Q |
222 |
tctag |
226 |
Q |
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||||| |
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| T |
5961838 |
tctag |
5961842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 40 - 226
Target Start/End: Original strand, 5983077 - 5983266
Alignment:
| Q |
40 |
acagagaagtcaattgatttcataatcaggttttctagggcagggaaactttcttcctatggaaatcttatgggagatgcctatgggaaatacggaaaag |
139 |
Q |
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||||| ||||||||||| || | || |||||||| ||||||||||| |||||||||||||||| ||||||||| ||||||| |||||||||||||||| |
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| T |
5983077 |
acagaaaagtcaattgagtttgtgattaggttttcgagggcagggaatctttcttcctatggaagtcttatgggggatgcctttgggaaatacggaaaaa |
5983176 |
T |
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| Q |
140 |
cgtcgttggagatatgtgttttaa---ctaccatcggtagtctgatcatgtacatgatcattattggtgagaccatattcttaagtctag |
226 |
Q |
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| T |
5983177 |
tatcggtggagatatgtattgtaatcggtaacactggtatgctgattgtttacatgatcattgttggtgagaccatattcttaattctag |
5983266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 140
Target Start/End: Original strand, 5932752 - 5932867
Alignment:
| Q |
25 |
ctaacagctttattgacagagaagtcaattgatttcataatcaggttttctagggcagggaaactttcttcctatggaaatcttatgggagatgcctatg |
124 |
Q |
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|||||||| || ||||||||||||||| |||| ||||| |||||||||| ||||||||||| |||||||| ||||||| ||||||||| ||||||| || |
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| T |
5932752 |
ctaacagcatttttgacagagaagtcagttgaattcatgctcaggttttcaagggcagggaatctttcttcatatggaagtcttatgggggatgcctttg |
5932851 |
T |
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| Q |
125 |
ggaaatacggaaaagc |
140 |
Q |
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||| ||| |||||||| |
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| T |
5932852 |
ggagatatggaaaagc |
5932867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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