View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2092_high_20 (Length: 251)
Name: NF2092_high_20
Description: NF2092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2092_high_20 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 33566427 - 33566189
Alignment:
| Q |
13 |
aatatacaaatatttgataatttttaaaaattataattaagtttcnnnnnnnttgttgttatattcctgaagtgaaaacttctgatcagatcattaaata |
112 |
Q |
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| T |
33566427 |
aatatacaaatatttgataatttttaaaa-ttataattaactttcaaaaaaattgttgttatattcctcaagtgaaaacttttgatcggatcattaaata |
33566329 |
T |
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| Q |
113 |
caatggaaacgacatctcaactatgtcgacacgttacatatatcttttgcaacgtctcaataattattatcaaataaatacaaataaagagatatggaga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33566328 |
caatggaaacgacatctcaactatgtcgacacgttacatatatcttttgcaacgtctcaataattattatcaaataaatacaaataaagagatatggaga |
33566229 |
T |
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| Q |
213 |
gactacacaaaaact-aatgatacaattgaaaataacatt |
251 |
Q |
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||||||||||||||| || ||||||||||||||||||||| |
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| T |
33566228 |
gactacacaaaaactaaaagatacaattgaaaataacatt |
33566189 |
T |
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