View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2092_high_21 (Length: 250)
Name: NF2092_high_21
Description: NF2092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2092_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 232
Target Start/End: Original strand, 30653514 - 30653735
Alignment:
| Q |
11 |
tgagatgaaatttctacataaagctttaaagagttttgtctctccaggtcagtctacgtaaagctttatctatccaccttctatgctcttaatgtgacat |
110 |
Q |
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| T |
30653514 |
tgaggtgaaatttctacataaagctttaaagagttttgtctctccaggtcagtctacgtaaagctttatctatccaccttctatgctcttaatgtgacat |
30653613 |
T |
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| Q |
111 |
ggcactacaaacatttctacatatcttgtatttaaaagttggttaatatattactcattcccatgctggaaatgctgccacgcgtatgtaaccatgaaat |
210 |
Q |
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| T |
30653614 |
gacactacaaacatttctacatatcttgtatttaaaagttggttaatatattactcattcccatgctggaaatgctgccacacgtatgtaaccatgaaat |
30653713 |
T |
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| Q |
211 |
tatattttagtttagttttatt |
232 |
Q |
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|||||||||||||||||||||| |
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| T |
30653714 |
tatattttagtttagttttatt |
30653735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 30653471 - 30653512
Alignment:
| Q |
11 |
tgagatgaaatttctacataaagctttaaagagttttgtctc |
52 |
Q |
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| T |
30653471 |
tgaggtgaaatttctacataaagctttaaagagttttgtctc |
30653512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 30653441 - 30653469
Alignment:
| Q |
24 |
ctacataaagctttaaagagttttgtctc |
52 |
Q |
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| T |
30653441 |
ctacataaagctttaaagagttttgtctc |
30653469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 166
Target Start/End: Complemental strand, 2551730 - 2551605
Alignment:
| Q |
30 |
aaagctttaaagagttttgtctctccaggtcagtctacgtaaagctttatctatccaccttctatgctcttaatgtgacatggcactacaaacatttcta |
129 |
Q |
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||||||||||||||||||| |||||||||||||||||| |||||||| |||| || |||||| ||||||| ||||| | ||||||||| |
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| T |
2551730 |
aaagctttaaagagttttggctctccaggtcagtctacataaagcttcatctctctaccttc-----------tgtgacacggcacaatgaacatttctg |
2551642 |
T |
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| Q |
130 |
catatcttgtatttaaaagttggttaatatattactc |
166 |
Q |
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|||||||||||||||||| |||||||||||||||||| |
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| T |
2551641 |
catatcttgtatttaaaatttggttaatatattactc |
2551605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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