View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2092_high_3 (Length: 523)

Name: NF2092_high_3
Description: NF2092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2092_high_3
NF2092_high_3
[»] chr4 (5 HSPs)
chr4 (13-504)||(50391326-50391824)
chr4 (124-226)||(42660144-42660250)
chr4 (62-130)||(46847004-46847069)
chr4 (124-162)||(50392475-50392513)
chr4 (158-202)||(25490858-25490902)
[»] chr3 (10 HSPs)
chr3 (38-210)||(48304469-48304643)
chr3 (158-231)||(8735720-8735797)
chr3 (158-231)||(9087961-9088038)
chr3 (124-162)||(44085462-44085500)
chr3 (124-195)||(45244883-45244954)
chr3 (162-208)||(28829206-28829252)
chr3 (124-166)||(45244465-45244507)
chr3 (124-166)||(45244674-45244716)
chr3 (158-208)||(46622272-46622322)
chr3 (174-231)||(49095653-49095714)
[»] chr5 (9 HSPs)
chr5 (38-210)||(36359085-36359259)
chr5 (131-231)||(26319827-26319931)
chr5 (124-195)||(43387867-43387938)
chr5 (140-231)||(37094243-37094338)
chr5 (124-166)||(38640763-38640805)
chr5 (124-162)||(36359626-36359664)
chr5 (124-165)||(38641180-38641221)
chr5 (144-208)||(38641214-38641278)
chr5 (124-160)||(43388113-43388149)
[»] chr1 (6 HSPs)
chr1 (38-210)||(38950743-38950917)
chr1 (124-208)||(24470668-24470752)
chr1 (124-166)||(43319233-43319275)
chr1 (158-233)||(32817247-32817326)
chr1 (124-166)||(43319022-43319064)
chr1 (158-195)||(9445679-9445716)
[»] chr8 (8 HSPs)
chr8 (124-226)||(36403619-36403725)
chr8 (124-232)||(41530962-41531074)
chr8 (124-166)||(24627649-24627691)
chr8 (124-166)||(7971034-7971076)
chr8 (124-231)||(24628066-24628176)
chr8 (124-166)||(41530750-41530792)
chr8 (13-59)||(42676842-42676888)
chr8 (124-208)||(7970230-7970314)
[»] chr2 (4 HSPs)
chr2 (124-227)||(9846976-9847083)
chr2 (128-208)||(25715846-25715926)
chr2 (124-166)||(25715440-25715482)
chr2 (124-164)||(25715640-25715680)
[»] scaffold0016 (1 HSPs)
scaffold0016 (124-208)||(205598-205681)
[»] chr6 (2 HSPs)
chr6 (158-208)||(16708601-16708651)
chr6 (164-197)||(17501525-17501558)


Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 13 - 504
Target Start/End: Complemental strand, 50391824 - 50391326
Alignment:
Q  13 aatatattgaggggttttcgggagtttattgataaacaaaagacaaagcatcattacatgagcaaaccccatcttttttaaaatggtgaaaacggtttct 112  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||   ||||||||||||| |||||||    
T  50391824 aatagattgaggggttttcgggagtttattgataaacaaaagacaaagcatcattacatgagcaaaacccatcttt---aaaatggtgaaaatggtttct 50391728  T
Q  113 atctcttgcaattttttcatggtgctgatgcaatccagaatacgtaatccggactgcaaatgggcatttttggaaattttacaaggcgcgcgagaaatac 212  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  50391727 atctcttgcaattttttcatggtgctgatgcaatccggaatacgtaatccggactgcaaatgggcatttttggaaattttacaagacgcgcgagaaatac 50391628  T
Q  213 ggtgggaaaagtaatactcata---nnnnnnnggcttttaatccatctacaagtaggaaaacagacattgaaggaaacgatggtttgtaacaagtgagtc 309  Q
    ||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  50391627 ggtgggaaaagtaatactcatattttttttttggcttttaatccatctacaagtaggaaaacagacattgaaggaaatgatggtttgtaacaagtgagtc 50391528  T
Q  310 acaactttcatcttataag-------tgtaatcaatgagttagattcaacttcaattttaagattatattataatctaaaaaactattaagtcactcgct 402  Q
     ||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  50391527 gcaactttcatcttataagtcagttttgtaatcaatgagttagattcaacttcaattttaagattatattataatctaaaaaactattgagtcaatcgct 50391428  T
Q  403 atcaaaccaatcagatcaggatccatatctcaatttctaatcctgaggagaggatgttaaaagtcgagagaagcaatagcatgtgtttataggtgatgag 502  Q
    |||||| |||||||||||  |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  50391427 atcaaatcaatcagatcacaatccatatctcagtttctaatcctgaggagagggtgttaaaagtcgagagaagcaatagcatgtgtttataagtgatgag 50391328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 124 - 226
Target Start/End: Complemental strand, 42660250 - 42660144
Alignment:
Q  124 ttttttcatggtgctgatgcaatccagaatacgtaatccggactgcaaatgggcatttttggaaattttacaaggcgcgcgaga----aatacggtggga 219  Q
    ||||||||||||||| ||||||||| || |||||||||||||||||||| ||| ||||||| |||||||||| |||||||||||    |||| |||||||    
T  42660250 ttttttcatggtgctaatgcaatccggattacgtaatccggactgcaaaggggtatttttgaaaattttacagggcgcgcgagaaggcaatagggtggga 42660151  T
Q  220 aaagtaa 226  Q
    |||||||    
T  42660150 aaagtaa 42660144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 46847004 - 46847069
Alignment:
Q  62 atcattacatgagcaaaccccatcttttttaaaatggtgaaaacggtttctatctcttgcaattttttc 130  Q
    ||||||||||||||||| |||||||||   |||||||||||||||||||||||||||||||||| ||||    
T  46847004 atcattacatgagcaaaacccatcttt---aaaatggtgaaaacggtttctatctcttgcaattatttc 46847069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 124 - 162
Target Start/End: Complemental strand, 50392513 - 50392475
Alignment:
Q  124 ttttttcatggtgctgatgcaatccagaatacgtaatcc 162  Q
    ||||||||||||||||||||||||| || ||||||||||    
T  50392513 ttttttcatggtgctgatgcaatccggattacgtaatcc 50392475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 25490902 - 25490858
Alignment:
Q  158 aatccggactgcaaatgggcatttttggaaattttacaaggcgcg 202  Q
    |||||||| |||| | |||||||||||||||||||||| ||||||    
T  25490902 aatccggaatgcacaagggcatttttggaaattttacagggcgcg 25490858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 5e-54; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 38 - 210
Target Start/End: Original strand, 48304469 - 48304643
Alignment:
Q  38 ttattgataaacaaaagacaaag-----catcattacatgagcaaaccccatcttttttaaaatggtgaaaacggtttctatctcttgcaattttttcat 132  Q
    |||||||||||||||||||||||     |||||||||||||||||| |||||||||   ||||||||||||||||||| |||||||||||||||||||||    
T  48304469 ttattgataaacaaaagacaaagtaaagcatcattacatgagcaaaacccatcttt---aaaatggtgaaaacggtttgtatctcttgcaattttttcat 48304565  T
Q  133 ggtgctgatgcaatccagaatacgtaatccggactgcaaatgggcatttttggaaattttacaaggcgcgcgagaaat 210  Q
    |||||||||||||| | || ||||||||||||||||||| |||||||||||| ||||||||||  |||||||||||||    
T  48304566 ggtgctgatgcaattcggattacgtaatccggactgcaactgggcatttttgaaaattttacagagcgcgcgagaaat 48304643  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 158 - 231
Target Start/End: Original strand, 8735720 - 8735797
Alignment:
Q  158 aatccggactgcaaatgggcatttttggaaattttacaaggcgcgcgaga----aatacggtgggaaaagtaatactc 231  Q
    |||||||| |||||| |||||||||||||||||||||| |||||||||||    || | |||||||||||||||||||    
T  8735720 aatccggattgcaaaggggcatttttggaaattttacagggcgcgcgagaagacaacagggtgggaaaagtaatactc 8735797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 158 - 231
Target Start/End: Original strand, 9087961 - 9088038
Alignment:
Q  158 aatccggactgcaaatgggcatttttggaaattttacaaggcgcgcgaga----aatacggtgggaaaagtaatactc 231  Q
    |||||||| |||||| |||||||||||||||||||||| |||||||||||    || | |||||||||||||||||||    
T  9087961 aatccggattgcaaaggggcatttttggaaattttacagggcgcgcgagaagacaacagggtgggaaaagtaatactc 9088038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 162
Target Start/End: Complemental strand, 44085500 - 44085462
Alignment:
Q  124 ttttttcatggtgctgatgcaatccagaatacgtaatcc 162  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  44085500 ttttttcatggtgctgatgcaatccagattacgtaatcc 44085462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 195
Target Start/End: Original strand, 45244883 - 45244954
Alignment:
Q  124 ttttttcatggtgctgatgcaatccagaatacgtaatccggactgcaaatgggcatttttggaaattttaca 195  Q
    ||||||||||||||| |||||||||  | ||| ||||||| || ||||| | ||||||||| ||||||||||    
T  45244883 ttttttcatggtgctaatgcaatccgaattacataatccgaacggcaaaggagcatttttgaaaattttaca 45244954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 28829252 - 28829206
Alignment:
Q  162 cggactgcaaatgggcatttttggaaattttacaaggcgcgcgagaa 208  Q
    ||||||||||| ||| |||||||||||||||||| ||||||| ||||    
T  28829252 cggactgcaaaggggtatttttggaaattttacagggcgcgcaagaa 28829206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 124 - 166
Target Start/End: Original strand, 45244465 - 45244507
Alignment:
Q  124 ttttttcatggtgctgatgcaatccagaatacgtaatccggac 166  Q
    ||||||||||||||||||||||||  || ||||||||||||||    
T  45244465 ttttttcatggtgctgatgcaatctggattacgtaatccggac 45244507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 124 - 166
Target Start/End: Original strand, 45244674 - 45244716
Alignment:
Q  124 ttttttcatggtgctgatgcaatccagaatacgtaatccggac 166  Q
    ||||||||||||||| ||||||||| || ||||||||||||||    
T  45244674 ttttttcatggtgctaatgcaatccggattacgtaatccggac 45244716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 46622322 - 46622272
Alignment:
Q  158 aatccggactgcaaatgggcatttttggaaattttacaaggcgcgcgagaa 208  Q
    |||||||| |||| ||||||||||||| |||||||||| |||||| |||||    
T  46622322 aatccggaatgcacatgggcatttttgaaaattttacagggcgcgggagaa 46622272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 174 - 231
Target Start/End: Complemental strand, 49095714 - 49095653
Alignment:
Q  174 gggcatttttggaaattttacaaggcgcgcgagaa----atacggtgggaaaagtaatactc 231  Q
    |||||||||||||||||||||| || ||| |||||    ||| |||||||||||||||||||    
T  49095714 gggcatttttggaaattttacagggtgcgggagaaggccatagggtgggaaaagtaatactc 49095653  T

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Target: chr5 (Bit Score: 92; Significance: 2e-44; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 38 - 210
Target Start/End: Complemental strand, 36359259 - 36359085
Alignment:
Q  38 ttattgataaacaaaagacaaag-----catcattacatgagcaaaccccatcttttttaaaatggtgaaaacggtttctatctcttgcaattttttcat 132  Q
    |||||||||||||||||||||||     |||||||||||||||||| | |||||||   ||||||||||||||||||| |||||||||||| ||||||||    
T  36359259 ttattgataaacaaaagacaaagtaaaacatcattacatgagcaaaactcatcttt---aaaatggtgaaaacggtttgtatctcttgcaactttttcat 36359163  T
Q  133 ggtgctgatgcaatccagaatacgtaatccggactgcaaatgggcatttttggaaattttacaaggcgcgcgagaaat 210  Q
    |||||||||||||| | || |||||||||||||||  |||||| |||||||| |||||||||| |||||| |||||||    
T  36359162 ggtgctgatgcaattcggattacgtaatccggactagaaatggacatttttgaaaattttacagggcgcgtgagaaat 36359085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 131 - 231
Target Start/End: Original strand, 26319827 - 26319931
Alignment:
Q  131 atggtgctgatgcaatccagaatacgtaatccggactgcaaatgggcatttttggaaattttacaaggcgcgcgaga----aatacggtgggaaaagtaa 226  Q
    ||||| || ||||||||| || ||||||||||||| |||||| |||||||||||||||||||||||||| | |||||    || | ||||||||||||||    
T  26319827 atggtcctaatgcaatccggattacgtaatccggaatgcaaaggggcatttttggaaattttacaaggcacacgagaagtcaacagggtgggaaaagtaa 26319926  T
Q  227 tactc 231  Q
    |||||    
T  26319927 tactc 26319931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 124 - 195
Target Start/End: Complemental strand, 43387938 - 43387867
Alignment:
Q  124 ttttttcatggtgctgatgcaatccagaatacgtaatccggactgcaaatgggcatttttggaaattttaca 195  Q
    |||| |||||||||| ||||||||| || || ||||||||||||||||| |||||||||| |||||||||||    
T  43387938 ttttctcatggtgctaatgcaatccggattatgtaatccggactgcaaaggggcatttttagaaattttaca 43387867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 140 - 231
Target Start/End: Complemental strand, 37094338 - 37094243
Alignment:
Q  140 atgcaatccagaatacgtaatccggactgcaaatgggcatttttggaaattttacaaggcgcgcgaga----aatacggtgggaaaagtaatactc 231  Q
    ||||||||| || |||||||||| || |||||| ||||||||||| |||||||||| |||||||||||    || | |||||||||||||||||||    
T  37094338 atgcaatccggattacgtaatccagaatgcaaaggggcatttttgaaaattttacagggcgcgcgagaagtcaacagggtgggaaaagtaatactc 37094243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 166
Target Start/End: Original strand, 38640763 - 38640805
Alignment:
Q  124 ttttttcatggtgctgatgcaatccagaatacgtaatccggac 166  Q
    ||||||||||||||||||||||||| || ||||||||||||||    
T  38640763 ttttttcatggtgctgatgcaatccggattacgtaatccggac 38640805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 124 - 162
Target Start/End: Complemental strand, 36359664 - 36359626
Alignment:
Q  124 ttttttcatggtgctgatgcaatccagaatacgtaatcc 162  Q
    ||||||||||||| |||||||||||||| ||||||||||    
T  36359664 ttttttcatggtgttgatgcaatccagattacgtaatcc 36359626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 165
Target Start/End: Original strand, 38641180 - 38641221
Alignment:
Q  124 ttttttcatggtgctgatgcaatccagaatacgtaatccgga 165  Q
    ||||||||||||||| ||||||||| || |||||||||||||    
T  38641180 ttttttcatggtgctaatgcaatccggattacgtaatccgga 38641221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 38641214 - 38641278
Alignment:
Q  144 aatccagaatacgtaatccggactgcaaatgggcatttttggaaattttacaaggcgcgcgagaa 208  Q
    ||||| || ||||||||||||||| |||| | |||| |||| |||||||||| ||| ||||||||    
T  38641214 aatccggattacgtaatccggactacaaaggagcatctttgaaaattttacagggcacgcgagaa 38641278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 160
Target Start/End: Complemental strand, 43388149 - 43388113
Alignment:
Q  124 ttttttcatggtgctgatgcaatccagaatacgtaat 160  Q
    ||||||||||||||||||||||||| || ||||||||    
T  43388149 ttttttcatggtgctgatgcaatccggattacgtaat 43388113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 3e-37; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 38 - 210
Target Start/End: Original strand, 38950743 - 38950917
Alignment:
Q  38 ttattgataaacaaaagacaaag-----catcattacatgagcaaaccccatcttttttaaaatggtgaaaacggtttctatctcttgcaattttttcat 132  Q
    |||||||||||||||||||||||     |||||||||||||||||| | |||||||   |||||||||| |||||||| |||||||||||||||||||||    
T  38950743 ttattgataaacaaaagacaaagtaaagcatcattacatgagcaaaactcatcttt---aaaatggtgataacggtttgtatctcttgcaattttttcat 38950839  T
Q  133 ggtgctgatgcaatccagaatacgtaatccggactgcaaatgggcatttttggaaattttacaaggcgcgcgagaaat 210  Q
    |||||||||||||| | || ||||||||||  |||| |||||| |||||||  ||||||||||  |||||||| ||||    
T  38950840 ggtgctgatgcaattcggattacgtaatccaaactgtaaatggacatttttaaaaattttacagagcgcgcgaaaaat 38950917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 124 - 208
Target Start/End: Complemental strand, 24470752 - 24470668
Alignment:
Q  124 ttttttcatggtgctgatgcaatccagaatacgtaatccggactgcaaatgggcatttttggaaattttacaaggcgcgcgagaa 208  Q
    |||||| ||||| || ||||||||  || ||||||||||||| |||||| |||||||||||||||||||||| ||||||| ||||    
T  24470752 tttttttatggtcctaatgcaatctggattacgtaatccggaatgcaaaggggcatttttggaaattttacagggcgcgcaagaa 24470668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 166
Target Start/End: Complemental strand, 43319275 - 43319233
Alignment:
Q  124 ttttttcatggtgctgatgcaatccagaatacgtaatccggac 166  Q
    ||||||||||||||||||||||||| || ||||||||||||||    
T  43319275 ttttttcatggtgctgatgcaatccggattacgtaatccggac 43319233  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 158 - 233
Target Start/End: Complemental strand, 32817326 - 32817247
Alignment:
Q  158 aatccggactgcaaatgggcatttttggaaattttacaaggcgcgcgagaa----atacggtgggaaaagtaatactcat 233  Q
    |||||||| |||| | ||||||||||| |||||||||| |||||| |||||    ||| |||||||||||||||| ||||    
T  32817326 aatccggaatgcacaagggcatttttgaaaattttacagggcgcgggagaaggctatagggtgggaaaagtaatagtcat 32817247  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 124 - 166
Target Start/End: Complemental strand, 43319064 - 43319022
Alignment:
Q  124 ttttttcatggtgctgatgcaatccagaatacgtaatccggac 166  Q
    ||||||||||||||||||||||||| || ||||||||| ||||    
T  43319064 ttttttcatggtgctgatgcaatccggattacgtaatctggac 43319022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 195
Target Start/End: Complemental strand, 9445716 - 9445679
Alignment:
Q  158 aatccggactgcaaatgggcatttttggaaattttaca 195  Q
    ||||||||||||||| |||||||||| |||||||||||    
T  9445716 aatccggactgcaaaggggcatttttagaaattttaca 9445679  T

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Target: chr8 (Bit Score: 58; Significance: 4e-24; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 124 - 226
Target Start/End: Complemental strand, 36403725 - 36403619
Alignment:
Q  124 ttttttcatggtgctgatgcaatccagaatacgtaatccggactgcaaatgggcatttttggaaattttacaaggcgcgcgagaa----atacggtggga 219  Q
    |||||| |||||| | ||||||||| || |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    ||| |||||||    
T  36403725 tttttttatggtgttaatgcaatccggattacgtaatccggactgcaaaggggcatttttgaaaattttacaaggcgcgcgagaaggctatagggtggga 36403626  T
Q  220 aaagtaa 226  Q
    |||||||    
T  36403625 aaagtaa 36403619  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 124 - 232
Target Start/End: Original strand, 41530962 - 41531074
Alignment:
Q  124 ttttttcatggtgctgatgcaatccagaatacgtaatccggactgcaaatgggcatttttggaaattttacaaggcgcgcga----gaaatacggtggga 219  Q
    ||||||||||||||| ||||||||| || ||||||||| ||| ||||||  |||||||||  |||||||||||| ||  |||    |||| | |||||||    
T  41530962 ttttttcatggtgctaatgcaatccggattacgtaatctggagtgcaaagaggcatttttaaaaattttacaagacgttcgagaaggaaacagggtggga 41531061  T
Q  220 aaagtaatactca 232  Q
    |||||||||||||    
T  41531062 aaagtaatactca 41531074  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 166
Target Start/End: Original strand, 24627649 - 24627691
Alignment:
Q  124 ttttttcatggtgctgatgcaatccagaatacgtaatccggac 166  Q
    ||||||||||||||||||||||||| || ||||||||||||||    
T  24627649 ttttttcatggtgctgatgcaatccggattacgtaatccggac 24627691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 124 - 166
Target Start/End: Complemental strand, 7971076 - 7971034
Alignment:
Q  124 ttttttcatggtgctgatgcaatccagaatacgtaatccggac 166  Q
    ||||| ||||||||||||||||||| || ||||||||||||||    
T  7971076 tttttccatggtgctgatgcaatccggattacgtaatccggac 7971034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 124 - 231
Target Start/End: Original strand, 24628066 - 24628176
Alignment:
Q  124 ttttttcatggtgctgatgcaatccagaatacgtaatccggactgcaaatgggcatttttggaaattttacaaggcgcgcgaga----aatacggtggga 219  Q
    ||||||||| ||| | ||||||||| || |||||||| | ||| ||||| ||||||||| | |||||||| | |||||||||||    || | |||||||    
T  24628066 ttttttcattgtgttaatgcaatccggattacgtaattcagacagcaaaggggcatttt-gaaaattttatagggcgcgcgagaatgcaacatggtggga 24628164  T
Q  220 aaagtaatactc 231  Q
    ||||||||||||    
T  24628165 aaagtaatactc 24628176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 124 - 166
Target Start/End: Original strand, 41530750 - 41530792
Alignment:
Q  124 ttttttcatggtgctgatgcaatccagaatacgtaatccggac 166  Q
    |||||||||||||||| |||||||| || ||||||||||||||    
T  41530750 ttttttcatggtgctgttgcaatccggattacgtaatccggac 41530792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 42676842 - 42676888
Alignment:
Q  13 aatatattgaggggttttcgggagtttattgataaacaaaagacaaa 59  Q
    |||| |||||||||||||| ||||| |||| ||||||||||||||||    
T  42676842 aatagattgaggggttttcaggagtatattcataaacaaaagacaaa 42676888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 208
Target Start/End: Complemental strand, 7970314 - 7970230
Alignment:
Q  124 ttttttcatggtgctgatgcaatccagaatacgtaatccggactgcaaatgggcatttttggaaattttacaaggcgcgcgagaa 208  Q
    ||||| ||||||||| || |||| | || || |||||||| | |||||| || |||||||| |||||||| | ||||||||||||    
T  7970314 tttttccatggtgctaatacaattcggattaggtaatccgaaatgcaaaaggacatttttgaaaattttatagggcgcgcgagaa 7970230  T

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Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 124 - 227
Target Start/End: Complemental strand, 9847083 - 9846976
Alignment:
Q  124 ttttttcatggtgctgatgcaatccagaatacgtaatccggactgcaaatgggcatttttggaaattttacaaggcgcgcgaga----aatacggtggga 219  Q
    ||||||||||||||| ||||||||   | |||||||||  ||||||||||| |||||||||||||||||||| |||||||||||    |||| |||||||    
T  9847083 ttttttcatggtgctaatgcaatcttaattacgtaatctagactgcaaatgagcatttttggaaattttacagggcgcgcgagaaggcaatagggtggga 9846984  T
Q  220 aaagtaat 227  Q
    ||||||||    
T  9846983 aaagtaat 9846976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 128 - 208
Target Start/End: Original strand, 25715846 - 25715926
Alignment:
Q  128 ttcatggtgctgatgcaatccagaatacgtaatccggactgcaaatgggcatttttggaaattttacaaggcgcgcgagaa 208  Q
    ||||||||||| || ||||||||| ||||||||  ||| |||||| |||||||||||||||||||||||||||| ||||||    
T  25715846 ttcatggtgctaatacaatccagattacgtaatatggaatgcaaaggggcatttttggaaattttacaaggcgcacgagaa 25715926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 166
Target Start/End: Original strand, 25715440 - 25715482
Alignment:
Q  124 ttttttcatggtgctgatgcaatccagaatacgtaatccggac 166  Q
    ||||||||||||||||||||||||| || ||||||||||||||    
T  25715440 ttttttcatggtgctgatgcaatccggattacgtaatccggac 25715482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 164
Target Start/End: Original strand, 25715640 - 25715680
Alignment:
Q  124 ttttttcatggtgctgatgcaatccagaatacgtaatccgg 164  Q
    |||||||||||||| |||||||||| || ||||||||||||    
T  25715640 ttttttcatggtgcagatgcaatccggattacgtaatccgg 25715680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 124 - 208
Target Start/End: Complemental strand, 205681 - 205598
Alignment:
Q  124 ttttttcatggtgctgatgcaatccagaatacgtaatccggactgcaaatgggcatttttggaaattttacaaggcgcgcgagaa 208  Q
    ||||||||| ||||| ||||||||| || ||||||||||| |||||||| ||||||||||| |||||||||| ||||||||||||    
T  205681 ttttttcatagtgctaatgcaatccggattacgtaatccgaactgcaaa-gggcatttttgaaaattttacagggcgcgcgagaa 205598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 16708601 - 16708651
Alignment:
Q  158 aatccggactgcaaatgggcatttttggaaattttacaaggcgcgcgagaa 208  Q
    ||||||||||||||| || |||| |||||||||||||| ||| ||||||||    
T  16708601 aatccggactgcaaagggacattgttggaaattttacagggcacgcgagaa 16708651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 17501525 - 17501558
Alignment:
Q  164 gactgcaaatgggcatttttggaaattttacaag 197  Q
    ||||||||| ||||||||||||||||||||||||    
T  17501525 gactgcaaaggggcatttttggaaattttacaag 17501558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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