View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2092_high_9 (Length: 399)
Name: NF2092_high_9
Description: NF2092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2092_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 42871188 - 42871444
Alignment:
| Q |
1 |
agtaaccagttaccatttgtaagttttatctgccatataataggcgtgtgcatatataaaggtatgttgcacaatttgcttttctgttatctttgcaaga |
100 |
Q |
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| T |
42871188 |
agtaaccagttaccatttgtaagttttatctgccatataataggcgtgtgcatatataaaggtatgttgcacaatttgcttttctgttatctttgcaaga |
42871287 |
T |
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| Q |
101 |
tattgtatatgatgatcaaattaatggcctccacaaaatgcaatgaaactaaaaagttgtgggacatgtatccaatcatccaaactttgagcgtggaggg |
200 |
Q |
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| T |
42871288 |
tattgtatatgatgatcaaattaatggcctccacaaaatgcaatgaaactaaaaggttgtgggacatgtatccaatcatccaaactttgagcgtgggggg |
42871387 |
T |
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| Q |
201 |
tggggtgaatacatggaactgtgataaagcatgattagagtgatatttcagagacaa |
257 |
Q |
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| T |
42871388 |
tggggtgaatacatggaactgtgataaagcatgatgagagtgatatttcagagacaa |
42871444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 283 - 389
Target Start/End: Original strand, 42871439 - 42871545
Alignment:
| Q |
283 |
agacaaaaacttgataatttggtccacacaaattgtaacgtttagctaagagacagagtgatcatttgagcaagtgggatagatagaaatatgccttatg |
382 |
Q |
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|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42871439 |
agacaataacttgatcatttggtccacacaaattgtaacgtttagctaagagacagagtgatcatttgagcaagtgggatagatagaaatatgccttatg |
42871538 |
T |
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| Q |
383 |
gcctatg |
389 |
Q |
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| T |
42871539 |
gcctatg |
42871545 |
T |
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