View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2092_low_1 (Length: 638)

Name: NF2092_low_1
Description: NF2092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2092_low_1
NF2092_low_1
[»] chr3 (11 HSPs)
chr3 (1-537)||(25250464-25251000)
chr3 (572-638)||(25249803-25249869)
chr3 (477-538)||(40285199-40285260)
chr3 (477-538)||(26863184-26863245)
chr3 (477-546)||(54142883-54142952)
chr3 (477-537)||(23027643-23027703)
chr3 (480-538)||(7433757-7433815)
chr3 (473-538)||(11632928-11632993)
chr3 (477-538)||(21388577-21388638)
chr3 (477-538)||(54356137-54356198)
chr3 (478-538)||(34795197-34795257)
[»] chr8 (14 HSPs)
chr8 (472-538)||(6007535-6007601)
chr8 (479-549)||(27917420-27917490)
chr8 (479-549)||(27963839-27963909)
chr8 (477-538)||(1153827-1153888)
chr8 (507-549)||(27881225-27881267)
chr8 (507-549)||(28021406-28021448)
chr8 (477-538)||(35308301-35308362)
chr8 (478-538)||(17073143-17073203)
chr8 (478-538)||(17575067-17575127)
chr8 (483-538)||(15199604-15199659)
chr8 (472-538)||(4443838-4443904)
chr8 (491-533)||(17072756-17072798)
chr8 (491-533)||(17575473-17575515)
chr8 (507-537)||(35102735-35102765)
[»] chr4 (12 HSPs)
chr4 (474-539)||(54175701-54175766)
chr4 (473-535)||(24739219-24739281)
chr4 (477-538)||(7239054-7239115)
chr4 (483-548)||(29100711-29100776)
chr4 (482-535)||(13222070-13222123)
chr4 (477-535)||(660460-660518)
chr4 (481-538)||(9518896-9518953)
chr4 (481-546)||(16435941-16436006)
chr4 (480-537)||(32500133-32500190)
chr4 (481-537)||(12928423-12928479)
chr4 (488-548)||(41103893-41103953)
chr4 (488-548)||(42816115-42816175)
[»] chr1 (19 HSPs)
chr1 (472-538)||(47795798-47795864)
chr1 (477-537)||(47793189-47793249)
chr1 (472-538)||(6844325-6844391)
chr1 (480-538)||(33674850-33674908)
chr1 (481-537)||(33813425-33813481)
chr1 (481-537)||(33872895-33872951)
chr1 (481-548)||(42834752-42834819)
chr1 (489-548)||(43114639-43114698)
chr1 (479-538)||(47794757-47794816)
chr1 (479-538)||(49243650-49243709)
chr1 (507-546)||(49480381-49480420)
chr1 (507-548)||(7562010-7562051)
chr1 (477-538)||(10338321-10338382)
chr1 (481-538)||(33240951-33241008)
chr1 (509-538)||(45807886-45807915)
chr1 (478-538)||(6614423-6614483)
chr1 (480-548)||(6941238-6941306)
chr1 (474-538)||(11981577-11981641)
chr1 (489-537)||(42429472-42429520)
[»] chr2 (10 HSPs)
chr2 (482-538)||(38722725-38722781)
chr2 (477-538)||(24545794-24545855)
chr2 (472-537)||(37201516-37201580)
chr2 (469-538)||(43004773-43004842)
chr2 (482-546)||(21479095-21479159)
chr2 (478-538)||(21479276-21479336)
chr2 (475-535)||(39844362-39844422)
chr2 (477-548)||(41347441-41347512)
chr2 (481-535)||(30668783-30668837)
chr2 (478-538)||(14787070-14787130)
[»] chr7 (12 HSPs)
chr7 (477-536)||(4399528-4399587)
chr7 (480-546)||(35223671-35223737)
chr7 (483-540)||(1644766-1644823)
chr7 (477-538)||(47222671-47222732)
chr7 (481-537)||(22644701-22644757)
chr7 (481-537)||(29102549-29102605)
chr7 (477-548)||(10282620-10282691)
chr7 (483-538)||(24689214-24689269)
chr7 (480-538)||(1644405-1644463)
chr7 (507-548)||(24162314-24162355)
chr7 (507-548)||(30122057-30122098)
chr7 (481-537)||(33858162-33858218)
[»] chr6 (2 HSPs)
chr6 (480-538)||(7204968-7205026)
chr6 (481-538)||(21980780-21980837)
[»] chr5 (13 HSPs)
chr5 (474-538)||(1349520-1349584)
chr5 (472-548)||(35781246-35781322)
chr5 (482-538)||(35781770-35781826)
chr5 (483-538)||(2211396-2211451)
chr5 (507-538)||(35040053-35040084)
chr5 (472-538)||(4728020-4728086)
chr5 (483-537)||(20515453-20515507)
chr5 (472-538)||(28793866-28793932)
chr5 (483-537)||(36197553-36197607)
chr5 (472-538)||(38184155-38184221)
chr5 (472-538)||(38214136-38214202)
chr5 (477-538)||(35041683-35041744)
chr5 (473-538)||(40591175-40591240)
[»] scaffold0224 (1 HSPs)
scaffold0224 (481-548)||(21833-21900)
[»] scaffold0016 (1 HSPs)
scaffold0016 (507-548)||(106211-106252)


Alignment Details
Target: chr3 (Bit Score: 505; Significance: 0; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 1 - 537
Target Start/End: Complemental strand, 25251000 - 25250464
Alignment:
Q  1 ctacaagaggagaaaggggatcaaattccgaagcaactctttttatcggaattcgtctgataaaatggtaaattttgtggatagcgcatttcatagatca 100  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  25251000 ctacaagaagagaaaggggatcaaattccgaagcaactgtttttatcggaattcgtctgataaaatggtaaattttgtggatagcgcgtttcatagatca 25250901  T
Q  101 gagggatgacaagtggtcattgttgtccttgaaagatggattggattatatttatttaatccatgatgtatctatttgtttgcttttcccatatttggtg 200  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25250900 gagggatgacaagtggtccttattgtccttgaaagatggattggattatatttatttaatccatgatgtatctatttgtttgcttttcccatatttggtg 25250801  T
Q  201 ggaaattcatagtgatttcttaatttaacatcatatacgtgtaaatataattttcaaaccaaacacatcaattttgtgacaatgaatcaagaaaagtagt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25250800 ggaaattcatagtgatttcttaatttaacatcatatacgtgtaaatataattttcaaaccaaacacatcaattttgtgacaatgaatcaagaaaagtagt 25250701  T
Q  301 ctatgcagtattgtttatacaacttcttttgtctttttattttcttatctgcctgttttactagcagtctttggtcaactaagttggtaatgttagtctt 400  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25250700 ctatgcagtattgtttatacaacttcttttgtctttctattttcttatctgcctgttttactagcagtctttggtcaactaagttggtaatgttagtctt 25250601  T
Q  401 gcagagtgcagaccaaatgtcataatgaaccattggatgcttctatttgttttctcatggaattgggttatattatgggcccgttttttacggataaaaa 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  25250600 gcagagtgcagaccaaatgtcataatgaaccattggatgcttctatttgttttctcatggaattgggttatattatgggcccgtttgttaccgataaaaa 25250501  T
Q  501 tatagctgattttgatataaaataatttagagattat 537  Q
    |||||||||||||||||||||||||||||||||||||    
T  25250500 tatagctgattttgatataaaataatttagagattat 25250464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 572 - 638
Target Start/End: Complemental strand, 25249869 - 25249803
Alignment:
Q  572 ttggtttacatatgtacatatgtaagttggtggtaattacaacaaaataaagtttaaagtcaatgtc 638  Q
    ||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  25249869 ttggtttacatatgtgcatatgtaagctggtggtaatcacaacaaaataaagtttaaagtcaatgtc 25249803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 477 - 538
Target Start/End: Complemental strand, 40285260 - 40285199
Alignment:
Q  477 gggcccgttttttacggataaaaatatagctgattttgatataaaataatttagagattata 538  Q
    |||||||||| |||||| | |||||| |  ||||||||||||||||||||||||||||||||    
T  40285260 gggcccgtttgttacggtttaaaataaaagtgattttgatataaaataatttagagattata 40285199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 477 - 538
Target Start/End: Complemental strand, 26863245 - 26863184
Alignment:
Q  477 gggcccgttttttacggataaaaatatagctgattttgatataaaataatttagagattata 538  Q
    |||||||||| |||||||| |||||| |  ||||||||| || |||||||||||||||||||    
T  26863245 gggcccgtttgttacggattaaaataaaagtgattttgacatcaaataatttagagattata 26863184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 477 - 546
Target Start/End: Original strand, 54142883 - 54142952
Alignment:
Q  477 gggcccgttttttacggataaaaatatagctgattttgatataaaataatttagagattataagaaaaat 546  Q
    |||||||||| |||| ||| |||||| |  ||||||||| ||||||||||||||||||| || |||||||    
T  54142883 gggcccgtttgttacagattaaaataaaagtgattttgacataaaataatttagagattttatgaaaaat 54142952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 477 - 537
Target Start/End: Original strand, 23027643 - 23027703
Alignment:
Q  477 gggcccgttttttacggataaaaatatagctgattttgatataaaataatttagagattat 537  Q
    |||||||||| ||||| || |||||| |  ||||||||| |||||||||||||||||||||    
T  23027643 gggcccgtttgttacgaattaaaataaaagtgattttgacataaaataatttagagattat 23027703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 480 - 538
Target Start/End: Complemental strand, 7433815 - 7433757
Alignment:
Q  480 cccgttttttacggataaaaatatagctgattttgatataaaataatttagagattata 538  Q
    ||||||| |||||||| |||||| |  | ||||||| ||||||||||||||||||||||    
T  7433815 cccgtttgttacggattaaaataaaagtaattttgacataaaataatttagagattata 7433757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 538
Target Start/End: Original strand, 11632928 - 11632993
Alignment:
Q  473 ttatgggcccgttttttacggataaaaatatagctgattttgatataaaataatttagagattata 538  Q
    ||||||| | |||| ||||||||  ||||| |  ||||||||| ||||||||||||||||||||||    
T  11632928 ttatgggtctgtttgttacggatttaaataaaagtgattttgacataaaataatttagagattata 11632993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 477 - 538
Target Start/End: Complemental strand, 21388638 - 21388577
Alignment:
Q  477 gggcccgttttttacggataaaaatatagctgattttgatataaaataatttagagattata 538  Q
    |||||| ||| |||||||| |||||  |  ||||||||| ||||||||||||||||||||||    
T  21388638 gggcccttttgttacggattaaaatcaaagtgattttgacataaaataatttagagattata 21388577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 477 - 538
Target Start/End: Original strand, 54356137 - 54356198
Alignment:
Q  477 gggcccgttttttacggataaaaatatagctgattttgatataaaataatttagagattata 538  Q
    |||||||||| |||||||| ||| || |  ||||||||| || |||||||||||||||||||    
T  54356137 gggcccgtttgttacggattaaagtaaaagtgattttgacattaaataatttagagattata 54356198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 478 - 538
Target Start/End: Complemental strand, 34795257 - 34795197
Alignment:
Q  478 ggcccgttttttacggataaaaatatagctgattttgatataaaataatttagagattata 538  Q
    ||||||||| |||||||| |||||| |  | |||||||  |||||||||||||||||||||    
T  34795257 ggcccgtttgttacggattaaaataaaagtaattttgacgtaaaataatttagagattata 34795197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 472 - 538
Target Start/End: Original strand, 6007535 - 6007601
Alignment:
Q  472 attatgggcccgttttttacggataaaaatatagctgattttgatataaaataatttagagattata 538  Q
    ||||||||||||||| |||||||| |||||| |  ||||||||| ||||||||||||||||||||||    
T  6007535 attatgggcccgtttgttacggattaaaataaaagtgattttgacataaaataatttagagattata 6007601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 479 - 549
Target Start/End: Original strand, 27917420 - 27917490
Alignment:
Q  479 gcccgttttttacggataaaaatatagctgattttgatataaaataatttagagattataagaaaaatcac 549  Q
    |||||||| ||||| || |||||| |  ||||||||||||||||||||||| |||||||| ||||||||||    
T  27917420 gcccgtttgttacgaattaaaataaaagtgattttgatataaaataatttaaagattatatgaaaaatcac 27917490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 479 - 549
Target Start/End: Original strand, 27963839 - 27963909
Alignment:
Q  479 gcccgttttttacggataaaaatatagctgattttgatataaaataatttagagattataagaaaaatcac 549  Q
    |||||||| ||||| || |||||| |  ||||||||||||||||||||||| |||||||| ||||||||||    
T  27963839 gcccgtttgttacgaattaaaataaaagtgattttgatataaaataatttaaagattatatgaaaaatcac 27963909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 477 - 538
Target Start/End: Complemental strand, 1153888 - 1153827
Alignment:
Q  477 gggcccgttttttacggataaaaatatagctgattttgatataaaataatttagagattata 538  Q
    |||||||||| |||| ||| |||||| |  ||||||||||||||||||||||||||||||||    
T  1153888 gggcccgtttgttacagattaaaataaaagtgattttgatataaaataatttagagattata 1153827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 507 - 549
Target Start/End: Original strand, 27881225 - 27881267
Alignment:
Q  507 tgattttgatataaaataatttagagattataagaaaaatcac 549  Q
    ||||||||||||||||||||||||||||||||  |||||||||    
T  27881225 tgattttgatataaaataatttagagattatataaaaaatcac 27881267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 507 - 549
Target Start/End: Original strand, 28021406 - 28021448
Alignment:
Q  507 tgattttgatataaaataatttagagattataagaaaaatcac 549  Q
    ||||||||||||||||||||||||||||||||  |||||||||    
T  28021406 tgattttgatataaaataatttagagattatataaaaaatcac 28021448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 477 - 538
Target Start/End: Complemental strand, 35308362 - 35308301
Alignment:
Q  477 gggcccgttttttacggataaaaatatagctgattttgatataaaataatttagagattata 538  Q
    |||||| ||| |||||||| |||||| |  ||||||||| ||||||||||||||||||||||    
T  35308362 gggcccttttgttacggattaaaataaaagtgattttgacataaaataatttagagattata 35308301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 478 - 538
Target Start/End: Complemental strand, 17073203 - 17073143
Alignment:
Q  478 ggcccgttttttacggataaaaatatagctgattttgatataaaataatttagagattata 538  Q
    ||||||||| |||| ||| |||||| |  ||||||||| ||||||||||||||||||||||    
T  17073203 ggcccgtttgttacagattaaaataaaagtgattttgacataaaataatttagagattata 17073143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 478 - 538
Target Start/End: Original strand, 17575067 - 17575127
Alignment:
Q  478 ggcccgttttttacggataaaaatatagctgattttgatataaaataatttagagattata 538  Q
    ||||||||| |||| ||| |||||| |  ||||||||| ||||||||||||||||||||||    
T  17575067 ggcccgtttgttacagattaaaataaaagtgattttgacataaaataatttagagattata 17575127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 483 - 538
Target Start/End: Original strand, 15199604 - 15199659
Alignment:
Q  483 gttttttacggataaaaatatagctgattttgatataaaataatttagagattata 538  Q
    |||| |||||||| |||||| |  ||||||||| ||||||||||||||||||||||    
T  15199604 gtttattacggattaaaataaaagtgattttgacataaaataatttagagattata 15199659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 472 - 538
Target Start/End: Original strand, 4443838 - 4443904
Alignment:
Q  472 attatgggcccgttttttacggataaaaatatagctgattttgatataaaataatttagagattata 538  Q
    |||| ||| |||||| |||||||| |||||| |  ||||||||| ||||||||||||| ||||||||    
T  4443838 attaagggtccgtttgttacggattaaaataaaagtgattttgacataaaataatttatagattata 4443904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 491 - 533
Target Start/End: Original strand, 17072756 - 17072798
Alignment:
Q  491 cggataaaaatatagctgattttgatataaaataatttagaga 533  Q
    ||||| |||||| || |||||||||||||||||||||||||||    
T  17072756 cggattaaaataaaggtgattttgatataaaataatttagaga 17072798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 491 - 533
Target Start/End: Complemental strand, 17575515 - 17575473
Alignment:
Q  491 cggataaaaatatagctgattttgatataaaataatttagaga 533  Q
    ||||| |||||| || |||||||||||||||||||||||||||    
T  17575515 cggattaaaataaaggtgattttgatataaaataatttagaga 17575473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 537
Target Start/End: Complemental strand, 35102765 - 35102735
Alignment:
Q  507 tgattttgatataaaataatttagagattat 537  Q
    |||||||||||||||||||||||||||||||    
T  35102765 tgattttgatataaaataatttagagattat 35102735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 474 - 539
Target Start/End: Original strand, 54175701 - 54175766
Alignment:
Q  474 tatgggcccgttttttacggataaaaatatagctgattttgatataaaataatttagagattataa 539  Q
    ||||||||||||| |||||||| |||||| |  ||||||||| |||||||||||||||||||||||    
T  54175701 tatgggcccgtttgttacggattaaaataaaagtgattttgacataaaataatttagagattataa 54175766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 473 - 535
Target Start/End: Complemental strand, 24739281 - 24739219
Alignment:
Q  473 ttatgggcccgttttttacggataaaaatatagctgattttgatataaaataatttagagatt 535  Q
    ||||| |||||||| |||||||| |||||| |  |||||||||||||||||||||||||||||    
T  24739281 ttatgcgcccgtttgttacggattaaaataaaagtgattttgatataaaataatttagagatt 24739219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 477 - 538
Target Start/End: Complemental strand, 7239115 - 7239054
Alignment:
Q  477 gggcccgttttttacggataaaaatatagctgattttgatataaaataatttagagattata 538  Q
    |||||||||| |||||||| |||||| |  ||||||||| ||||||||||||||||||||||    
T  7239115 gggcccgtttgttacggattaaaataaaagtgattttgacataaaataatttagagattata 7239054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 483 - 548
Target Start/End: Original strand, 29100711 - 29100776
Alignment:
Q  483 gttttttacggataaaaatatagctgattttgatataaaataatttagagattataagaaaaatca 548  Q
    |||| |||||||| |||||| |  ||||||||||||||||||||||| |||||||| |||||||||    
T  29100711 gtttgttacggattaaaataaaagtgattttgatataaaataatttaaagattatatgaaaaatca 29100776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 482 - 535
Target Start/End: Original strand, 13222070 - 13222123
Alignment:
Q  482 cgttttttacggataaaaatatagctgattttgatataaaataatttagagatt 535  Q
    ||||| |||||||| |||||| |  |||||||||||||||||||||||||||||    
T  13222070 cgtttgttacggattaaaataaaagtgattttgatataaaataatttagagatt 13222123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 477 - 535
Target Start/End: Original strand, 660460 - 660518
Alignment:
Q  477 gggcccgttttttacggataaaaatatagctgattttgatataaaataatttagagatt 535  Q
    |||||||||| ||||||||  ||||| |  ||||||||| |||||||||||||||||||    
T  660460 gggcccgtttgttacggatttaaataaaagtgattttgacataaaataatttagagatt 660518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 538
Target Start/End: Original strand, 9518896 - 9518953
Alignment:
Q  481 ccgttttttacggataaaaatatagctgattttgatataaaataatttagagattata 538  Q
    |||||| |||||||| |||||| |  |||||| || ||||||||||||||||||||||    
T  9518896 ccgtttgttacggattaaaataaaagtgatttagacataaaataatttagagattata 9518953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 546
Target Start/End: Original strand, 16435941 - 16436006
Alignment:
Q  481 ccgttttttacggataaaaatatagctgattttgatataaaataatttagagattataagaaaaat 546  Q
    |||||| |||||||  |||||| |  ||||||||| ||||||||||||||||||| || |||||||    
T  16435941 ccgtttgttacggactaaaataaaagtgattttgaaataaaataatttagagattttatgaaaaat 16436006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 480 - 537
Target Start/End: Original strand, 32500133 - 32500190
Alignment:
Q  480 cccgttttttacggataaaaatatagctgattttgatataaaataatttagagattat 537  Q
    ||||||| |||| ||| |||||| |  ||||||| |||||||||||||||||||||||    
T  32500133 cccgtttattacagattaaaataaaagtgattttaatataaaataatttagagattat 32500190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 481 - 537
Target Start/End: Original strand, 12928423 - 12928479
Alignment:
Q  481 ccgttttttacggataaaaatatagctgattttgatataaaataatttagagattat 537  Q
    |||||| |||||||| |||||| |  |||||||||  ||||||||||||||||||||    
T  12928423 ccgtttgttacggattaaaataaaagtgattttgacgtaaaataatttagagattat 12928479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 488 - 548
Target Start/End: Original strand, 41103893 - 41103953
Alignment:
Q  488 ttacggataaaaatatagctgattttgatataaaataatttagagattataagaaaaatca 548  Q
    |||||||| |||||| |  ||||||| | ||||||||||||||||||| || |||||||||    
T  41103893 ttacggattaaaataaaagtgattttcacataaaataatttagagattttatgaaaaatca 41103953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 488 - 548
Target Start/End: Complemental strand, 42816175 - 42816115
Alignment:
Q  488 ttacggataaaaatatagctgattttgatataaaataatttagagattataagaaaaatca 548  Q
    |||||||| |||||| |  |||||||||  |||||||||||||||||| || |||||||||    
T  42816175 ttacggattaaaataaaagtgattttgacgtaaaataatttagagattttatgaaaaatca 42816115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 472 - 538
Target Start/End: Original strand, 47795798 - 47795864
Alignment:
Q  472 attatgggcccgttttttacggataaaaatatagctgattttgatataaaataatttagagattata 538  Q
    |||| |||||||||| |||||||| |||||| |  ||||||||||||||||||||||| ||||||||    
T  47795798 attaagggcccgtttgttacggattaaaataaaagtgattttgatataaaataatttatagattata 47795864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 477 - 537
Target Start/End: Original strand, 47793189 - 47793249
Alignment:
Q  477 gggcccgttttttacggataaaaatatagctgattttgatataaaataatttagagattat 537  Q
    |||||||||| |||||||| |||||| |  ||||||||| |||||||||||||||||||||    
T  47793189 gggcccgtttgttacggattaaaataaaagtgattttgacataaaataatttagagattat 47793249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 472 - 538
Target Start/End: Original strand, 6844325 - 6844391
Alignment:
Q  472 attatgggcccgttttttacggataaaaatatagctgattttgatataaaataatttagagattata 538  Q
    |||| |||||||||| |||| ||| |||||| |  ||||||||| ||||||||||||||||||||||    
T  6844325 attaagggcccgtttgttacagattaaaataaaagtgattttgacataaaataatttagagattata 6844391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 480 - 538
Target Start/End: Original strand, 33674850 - 33674908
Alignment:
Q  480 cccgttttttacggataaaaatatagctgattttgatataaaataatttagagattata 538  Q
    ||||||| |||||||| |||||| |  ||||||||| ||||||||||||||||||||||    
T  33674850 cccgtttgttacggattaaaataaaaatgattttgacataaaataatttagagattata 33674908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 481 - 537
Target Start/End: Complemental strand, 33813481 - 33813425
Alignment:
Q  481 ccgttttttacggataaaaatatagctgattttgatataaaataatttagagattat 537  Q
    |||||| |||||||| |||||| |  ||||||||| |||||||||||||||||||||    
T  33813481 ccgtttgttacggattaaaataaaagtgattttgacataaaataatttagagattat 33813425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 481 - 537
Target Start/End: Complemental strand, 33872951 - 33872895
Alignment:
Q  481 ccgttttttacggataaaaatatagctgattttgatataaaataatttagagattat 537  Q
    |||||| |||||||| |||||| |  ||||||||| |||||||||||||||||||||    
T  33872951 ccgtttgttacggattaaaataaaagtgattttgacataaaataatttagagattat 33872895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 548
Target Start/End: Complemental strand, 42834819 - 42834752
Alignment:
Q  481 ccgttttttacggataaaaatatagctgattttgatataaaataatttagagattataagaaaaatca 548  Q
    |||||| |||||||| |||||| |  ||||||||| ||||||||||||||||||| |  |||||||||    
T  42834819 ccgtttgttacggattaaaataaaagtgattttgacataaaataatttagagattttttgaaaaatca 42834752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 489 - 548
Target Start/End: Original strand, 43114639 - 43114698
Alignment:
Q  489 tacggataaaaatatagctgattttgatataaaataatttagagattataagaaaaatca 548  Q
    ||||||| |||||| |  ||||||||| ||||||||||||||||||| || |||||||||    
T  43114639 tacggattaaaataaaagtgattttgacataaaataatttagagattttatgaaaaatca 43114698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 538
Target Start/End: Complemental strand, 47794816 - 47794757
Alignment:
Q  479 gcccgttttttacggataaaaatatagctgattttgatataaaataatttagagattata 538  Q
    |||||||| |||||||| |||||| |  ||||||||| ||||||||| ||||||||||||    
T  47794816 gcccgtttgttacggattaaaataaaagtgattttgacataaaataaattagagattata 47794757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 538
Target Start/End: Original strand, 49243650 - 49243709
Alignment:
Q  479 gcccgttttttacggataaaaatatagctgattttgatataaaataatttagagattata 538  Q
    |||||||| ||| |||| |||||| |  |||||||||| |||||||||||||||||||||    
T  49243650 gcccgtttgttatggattaaaataaaagtgattttgatgtaaaataatttagagattata 49243709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 507 - 546
Target Start/End: Complemental strand, 49480420 - 49480381
Alignment:
Q  507 tgattttgatataaaataatttagagattataagaaaaat 546  Q
    ||||||||| ||||||||||||||||||| ||||||||||    
T  49480420 tgattttgacataaaataatttagagattttaagaaaaat 49480381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 548
Target Start/End: Complemental strand, 7562051 - 7562010
Alignment:
Q  507 tgattttgatataaaataatttagagattataagaaaaatca 548  Q
    ||||||||| ||||||||||||||||||| || |||||||||    
T  7562051 tgattttgacataaaataatttagagattttatgaaaaatca 7562010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 477 - 538
Target Start/End: Complemental strand, 10338382 - 10338321
Alignment:
Q  477 gggcccgttttttacggataaaaatatagctgattttgatataaaataatttagagattata 538  Q
    |||||||||| ||||  || |||||| |  ||||||||| ||||||||||||||||||||||    
T  10338382 gggcccgtttgttacatattaaaataaaagtgattttgacataaaataatttagagattata 10338321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 538
Target Start/End: Original strand, 33240951 - 33241008
Alignment:
Q  481 ccgttttttacggataaaaatatagctgattttgatataaaataatttagagattata 538  Q
    |||||| ||| |||| |||||| |  ||||||||| ||||||||||||||||||||||    
T  33240951 ccgtttgttatggattaaaataaaagtgattttgacataaaataatttagagattata 33241008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 538
Target Start/End: Original strand, 45807886 - 45807915
Alignment:
Q  509 attttgatataaaataatttagagattata 538  Q
    ||||||||||||||||||||||||||||||    
T  45807886 attttgatataaaataatttagagattata 45807915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 478 - 538
Target Start/End: Complemental strand, 6614483 - 6614423
Alignment:
Q  478 ggcccgttttttacggataaaaatatagctgattttgatataaaataatttagagattata 538  Q
    ||||||||| |||| ||| |||||| |  ||||||||| ||||||||||||| ||||||||    
T  6614483 ggcccgtttgttacagattaaaataaaagtgattttgacataaaataatttaaagattata 6614423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 480 - 548
Target Start/End: Original strand, 6941238 - 6941306
Alignment:
Q  480 cccgttttttacggataaaaatatagctgattttgatataaaataatttagagattataagaaaaatca 548  Q
    ||||||| |||||||| |||||| |  |||||||||  |||||||||||||| ||| || |||||||||    
T  6941238 cccgtttgttacggattaaaataaaagtgattttgacgtaaaataatttagaaattttatgaaaaatca 6941306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 474 - 538
Target Start/End: Original strand, 11981577 - 11981641
Alignment:
Q  474 tatgggcccgttttttacggataaaaatatagctgattttgatataaaataatttagagattata 538  Q
    |||||| |||||| || | ||| |||||| |  ||||||||| ||||||||||||||||||||||    
T  11981577 tatgggtccgtttgttgcagattaaaataaaagtgattttgacataaaataatttagagattata 11981641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 489 - 537
Target Start/End: Original strand, 42429472 - 42429520
Alignment:
Q  489 tacggataaaaatatagctgattttgatataaaataatttagagattat 537  Q
    ||||||| |||||| |  ||||||||| |||||||||||||||||||||    
T  42429472 tacggattaaaataaaagtgattttgacataaaataatttagagattat 42429520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 482 - 538
Target Start/End: Original strand, 38722725 - 38722781
Alignment:
Q  482 cgttttttacggataaaaatatagctgattttgatataaaataatttagagattata 538  Q
    ||||| |||||||| |||||| |  ||||||||||||||||||||||||||||||||    
T  38722725 cgtttattacggattaaaataaaaatgattttgatataaaataatttagagattata 38722781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 477 - 538
Target Start/End: Complemental strand, 24545855 - 24545794
Alignment:
Q  477 gggcccgttttttacggataaaaatatagctgattttgatataaaataatttagagattata 538  Q
    |||| ||||| |||||||| |||||| |  ||||||||| ||||||||||||||||||||||    
T  24545855 gggctcgtttgttacggattaaaataaaagtgattttgacataaaataatttagagattata 24545794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 472 - 537
Target Start/End: Original strand, 37201516 - 37201580
Alignment:
Q  472 attatgggcccgttttttacggataaaaatatagctgattttgatataaaataatttagagattat 537  Q
    |||| ||||||||||||||||||| |||  | || ||||||||| |||||||||||||||||||||    
T  37201516 attaagggcccgttttttacggattaaataaaag-tgattttgacataaaataatttagagattat 37201580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 469 - 538
Target Start/End: Original strand, 43004773 - 43004842
Alignment:
Q  469 tatattatgggcccgttttttacggataaaaatatagctgattttgatataaaataatttagagattata 538  Q
    ||||||| | |||||||| || ||||| |||||| |  ||||||||| ||||||||||||||||||||||    
T  43004773 tatattaagagcccgtttattgcggattaaaataaaagtgattttgacataaaataatttagagattata 43004842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 482 - 546
Target Start/End: Original strand, 21479095 - 21479159
Alignment:
Q  482 cgttttttacggataaaaatatagctgattttgatataaaataatttagagattataagaaaaat 546  Q
    ||||| |||||||| |||||| |  ||||||||| ||||||||||||||||||| || |||||||    
T  21479095 cgtttgttacggattaaaataaaagtgattttgacataaaataatttagagattttatgaaaaat 21479159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 478 - 538
Target Start/End: Original strand, 21479276 - 21479336
Alignment:
Q  478 ggcccgttttttacggataaaaatatagctgattttgatataaaataatttagagattata 538  Q
    ||||||||| |||||||| |||||| |  ||||| ||| ||||||||||||||||||||||    
T  21479276 ggcccgtttgttacggattaaaataaaattgattctgacataaaataatttagagattata 21479336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 475 - 535
Target Start/End: Complemental strand, 39844422 - 39844362
Alignment:
Q  475 atgggcccgttttttacggataaaaatatagctgattttgatataaaataatttagagatt 535  Q
    ||||| |||||| |||||||| ||||||||  || |||||| |||||||||||||||||||    
T  39844422 atgggtccgtttgttacggattaaaatataagtggttttgacataaaataatttagagatt 39844362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 548
Target Start/End: Complemental strand, 41347512 - 41347441
Alignment:
Q  477 gggcccgttttttacggataaaaatatagctgattttgatataaaataatttagagattataagaaaaatca 548  Q
    |||| ||||| |||||||| |||||| |  | ||||||| || ||||||||||||||||||| |||||||||    
T  41347512 gggctcgtttgttacggattaaaataaaagtcattttgacattaaataatttagagattatatgaaaaatca 41347441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 481 - 535
Target Start/End: Original strand, 30668783 - 30668837
Alignment:
Q  481 ccgttttttacggataaaaatatagctgattttgatataaaataatttagagatt 535  Q
    ||||||||||||||| |||||| |  ||||||| | |||||||||||||||||||    
T  30668783 ccgttttttacggattaaaataaaagtgattttcacataaaataatttagagatt 30668837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 478 - 538
Target Start/End: Original strand, 14787070 - 14787130
Alignment:
Q  478 ggcccgttttttacggataaaaatatagctgattttgatataaaataatttagagattata 538  Q
    ||||||||| ||||  || |||||| |  ||||||||| ||||||||||||||||||||||    
T  14787070 ggcccgtttgttactaattaaaataaaagtgattttgacataaaataatttagagattata 14787130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 477 - 536
Target Start/End: Original strand, 4399528 - 4399587
Alignment:
Q  477 gggcccgttttttacggataaaaatatagctgattttgatataaaataatttagagatta 536  Q
    |||||||||| |||||||| |||| | |  ||||||||||||||||||||||||||||||    
T  4399528 gggcccgtttgttacggattaaaacaaaagtgattttgatataaaataatttagagatta 4399587  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 480 - 546
Target Start/End: Original strand, 35223671 - 35223737
Alignment:
Q  480 cccgttttttacggataaaaatatagctgattttgatataaaataatttagagattataagaaaaat 546  Q
    ||||||| |||||||| |||||| |  ||||||||| ||||||||||||||||||| || |||||||    
T  35223671 cccgtttgttacggattaaaataaaagtgattttgacataaaataatttagagattttatgaaaaat 35223737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 483 - 540
Target Start/End: Complemental strand, 1644823 - 1644766
Alignment:
Q  483 gttttttacggataaaaatatagctgattttgatataaaataatttagagattataag 540  Q
    |||| |||||||| |||||| |  ||||||| ||||||||||||||||||||||||||    
T  1644823 gtttgttacggattaaaataaaattgatttttatataaaataatttagagattataag 1644766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 477 - 538
Target Start/End: Complemental strand, 47222732 - 47222671
Alignment:
Q  477 gggcccgttttttacggataaaaatatagctgattttgatataaaataatttagagattata 538  Q
    |||||||||| |||||||| |||||| |  ||||||| | ||||||||||||||||||||||    
T  47222732 gggcccgtttgttacggattaaaataaaagtgattttcacataaaataatttagagattata 47222671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 481 - 537
Target Start/End: Original strand, 22644701 - 22644757
Alignment:
Q  481 ccgttttttacggataaaaatatagctgattttgatataaaataatttagagattat 537  Q
    |||||| |||||||| |||||| |  ||||||||| |||||||||||||||||||||    
T  22644701 ccgtttgttacggattaaaataaaagtgattttgacataaaataatttagagattat 22644757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 481 - 537
Target Start/End: Original strand, 29102549 - 29102605
Alignment:
Q  481 ccgttttttacggataaaaatatagctgattttgatataaaataatttagagattat 537  Q
    |||||| |||||||| |||||| |  ||||||||| |||||||||||||||||||||    
T  29102549 ccgtttgttacggattaaaataaaattgattttgacataaaataatttagagattat 29102605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 548
Target Start/End: Complemental strand, 10282691 - 10282620
Alignment:
Q  477 gggcccgttttttacggataaaaatatagctgattttgatataaaataatttagagattataagaaaaatca 548  Q
    ||||| |||| |||| ||| |||||| |  ||||||||| ||||||||||||||||||| || |||||||||    
T  10282691 gggcctgtttgttacagattaaaataaaagtgattttgacataaaataatttagagattttatgaaaaatca 10282620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 483 - 538
Target Start/End: Original strand, 24689214 - 24689269
Alignment:
Q  483 gttttttacggataaaaatatagctgattttgatataaaataatttagagattata 538  Q
    |||| |||||||| |||||| |  ||||||||| ||||||||||||||||||||||    
T  24689214 gtttgttacggattaaaataaaagtgattttgacataaaataatttagagattata 24689269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 480 - 538
Target Start/End: Original strand, 1644405 - 1644463
Alignment:
Q  480 cccgttttttacggataaaaatatagctgattttgatataaaataatttagagattata 538  Q
    ||||||| |||||||| |||||| |  ||||||||| ||||||||||||| ||||||||    
T  1644405 cccgtttgttacggattaaaataaaagtgattttgacataaaataatttaaagattata 1644463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 548
Target Start/End: Complemental strand, 24162355 - 24162314
Alignment:
Q  507 tgattttgatataaaataatttagagattataagaaaaatca 548  Q
    ||||||||| ||||||||||||||||||| || |||||||||    
T  24162355 tgattttgacataaaataatttagagattttatgaaaaatca 24162314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 548
Target Start/End: Complemental strand, 30122098 - 30122057
Alignment:
Q  507 tgattttgatataaaataatttagagattataagaaaaatca 548  Q
    ||||||||| ||||||||||||||||||| || |||||||||    
T  30122098 tgattttgacataaaataatttagagattttatgaaaaatca 30122057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 481 - 537
Target Start/End: Complemental strand, 33858218 - 33858162
Alignment:
Q  481 ccgttttttacggataaaaatatagctgattttgatataaaataatttagagattat 537  Q
    |||||| |||| ||| |||||| |  ||||||||| |||||||||||||||||||||    
T  33858218 ccgtttgttacagattaaaataaaagtgattttgacataaaataatttagagattat 33858162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 480 - 538
Target Start/End: Complemental strand, 7205026 - 7204968
Alignment:
Q  480 cccgttttttacggataaaaatatagctgattttgatataaaataatttagagattata 538  Q
    ||||||| |||||||| |||||| |  ||||||||| ||||||||||||||||||||||    
T  7205026 cccgtttgttacggattaaaataaaagtgattttgacataaaataatttagagattata 7204968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 538
Target Start/End: Original strand, 21980780 - 21980837
Alignment:
Q  481 ccgttttttacggataaaaatatagctgattttgatataaaataatttagagattata 538  Q
    |||||| |||| ||| ||||||||  | ||||||| ||||||||||||||||||||||    
T  21980780 ccgtttgttacagattaaaatataagttattttgacataaaataatttagagattata 21980837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 474 - 538
Target Start/End: Original strand, 1349520 - 1349584
Alignment:
Q  474 tatgggcccgttttttacggataaaaatatagctgattttgatataaaataatttagagattata 538  Q
    ||||||| ||||| |||| ||| |||||| |  ||||||||| ||||||||||||||||||||||    
T  1349520 tatgggctcgtttgttacagattaaaataaaagtgattttgacataaaataatttagagattata 1349584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 472 - 548
Target Start/End: Original strand, 35781246 - 35781322
Alignment:
Q  472 attatgggcccgttttttacggataaaaatatagctgattttgatataaaataatttagagattataagaaaaatca 548  Q
    |||| ||| |||||| |||| ||| |||||| |  ||||||||| ||||||||||||||||||| || |||||||||    
T  35781246 attaagggtccgtttgttacagattaaaataaaagtgattttgacataaaataatttagagattttatgaaaaatca 35781322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 482 - 538
Target Start/End: Complemental strand, 35781826 - 35781770
Alignment:
Q  482 cgttttttacggataaaaatatagctgattttgatataaaataatttagagattata 538  Q
    ||||| |||||||| |||||| |  ||||||||| ||||||||||||||||||||||    
T  35781826 cgtttgttacggattaaaataaaagtgattttgacataaaataatttagagattata 35781770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 483 - 538
Target Start/End: Complemental strand, 2211451 - 2211396
Alignment:
Q  483 gttttttacggataaaaatatagctgattttgatataaaataatttagagattata 538  Q
    |||| |||||||| |||||| |  ||||||||| ||||||||||||||||||||||    
T  2211451 gtttgttacggattaaaataaaagtgattttgacataaaataatttagagattata 2211396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 507 - 538
Target Start/End: Original strand, 35040053 - 35040084
Alignment:
Q  507 tgattttgatataaaataatttagagattata 538  Q
    ||||||||||||||||||||||||||||||||    
T  35040053 tgattttgatataaaataatttagagattata 35040084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 472 - 538
Target Start/End: Complemental strand, 4728086 - 4728020
Alignment:
Q  472 attatgggcccgttttttacggataaaaatatagctgattttgatataaaataatttagagattata 538  Q
    ||||||||| | ||| | |||||| |||||| |  |||||||||||||||||||||||||| |||||    
T  4728086 attatgggctcatttatcacggattaaaataaaagtgattttgatataaaataatttagagtttata 4728020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 483 - 537
Target Start/End: Complemental strand, 20515507 - 20515453
Alignment:
Q  483 gttttttacggataaaaatatagctgattttgatataaaataatttagagattat 537  Q
    |||| |||||||| |||||| |  ||||||||| |||||||||||||||||||||    
T  20515507 gtttgttacggattaaaataaaagtgattttgacataaaataatttagagattat 20515453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 472 - 538
Target Start/End: Original strand, 28793866 - 28793932
Alignment:
Q  472 attatgggcccgttttttacggataaaaatatagctgattttgatataaaataatttagagattata 538  Q
    |||||||| |||||| |||||||| || ||| |  ||||||||| || |||||||||||||||||||    
T  28793866 attatgggtccgtttgttacggattaacataaaagtgattttgacatcaaataatttagagattata 28793932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 483 - 537
Target Start/End: Original strand, 36197553 - 36197607
Alignment:
Q  483 gttttttacggataaaaatatagctgattttgatataaaataatttagagattat 537  Q
    |||| |||||||| |||||| |  ||||||||| |||||||||||||||||||||    
T  36197553 gtttgttacggattaaaataaaaatgattttgacataaaataatttagagattat 36197607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 472 - 538
Target Start/End: Original strand, 38184155 - 38184221
Alignment:
Q  472 attatgggcccgttttttacggataaaaatatagctgattttgatataaaataatttagagattata 538  Q
    |||| |||||||||| ||||| |  |||||| |  ||||||||| ||||||||||||||||||||||    
T  38184155 attaagggcccgtttgttacgaaataaaataaaagtgattttgacataaaataatttagagattata 38184221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 472 - 538
Target Start/End: Complemental strand, 38214202 - 38214136
Alignment:
Q  472 attatgggcccgttttttacggataaaaatatagctgattttgatataaaataatttagagattata 538  Q
    |||| |||||||||| ||||| |  |||||| |  ||||||||| ||||||||||||||||||||||    
T  38214202 attaagggcccgtttgttacgaaataaaataaaagtgattttgacataaaataatttagagattata 38214136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 477 - 538
Target Start/End: Complemental strand, 35041744 - 35041683
Alignment:
Q  477 gggcccgttttttacggataaaaatatagctgattttgatataaaataatttagagattata 538  Q
    |||||||||| |||||||| |||||| |  |||||||||  ||| |||||||||||||||||    
T  35041744 gggcccgtttgttacggattaaaataaaagtgattttgacgtaagataatttagagattata 35041683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 538
Target Start/End: Original strand, 40591175 - 40591240
Alignment:
Q  473 ttatgggcccgttttttacggataaaaatatagctgattttgatataaaataatttagagattata 538  Q
    |||| |||| |||| |||||||| |||||| |  ||||||||| ||||| ||||||||||||||||    
T  40591175 ttataggcctgtttgttacggattaaaataaaagtgattttgacataaattaatttagagattata 40591240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0224 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 548
Target Start/End: Complemental strand, 21900 - 21833
Alignment:
Q  481 ccgttttttacggataaaaatatagctgattttgatataaaataatttagagattataagaaaaatca 548  Q
    |||||| |||||||| |||||| |  ||||||||| ||||||||||||||||||| |  |||||||||    
T  21900 ccgtttgttacggattaaaataaaagtgattttgacataaaataatttagagattttttgaaaaatca 21833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 548
Target Start/End: Complemental strand, 106252 - 106211
Alignment:
Q  507 tgattttgatataaaataatttagagattataagaaaaatca 548  Q
    ||||||||| ||||||||||||||||||| || |||||||||    
T  106252 tgattttgacataaaataatttagagattttatgaaaaatca 106211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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