View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2092_low_10 (Length: 441)
Name: NF2092_low_10
Description: NF2092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2092_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 3e-83; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 21 - 316
Target Start/End: Original strand, 26425618 - 26425914
Alignment:
| Q |
21 |
gtggatatattacaccaataatacaattaacaaaaactattcctcatttaaccgtnnnnnnnnnnnnnnnnnnnnntcctcattttctacttggctattg |
120 |
Q |
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| T |
26425618 |
gtggatatattacaccaataatacaattaacaaaaactattcctcatttaaccgtaaaaaataagaaaaaaaaa--tcctcattttctacttggctattg |
26425715 |
T |
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| Q |
121 |
tcacggattgtgtcacaaggaatgtaatataatcacatgagccatatgatttaggg-tggacaaatttttataagnnnnnnnntattattttcagaagta |
219 |
Q |
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| T |
26425716 |
tcacggattgtgtcacaaggaatgtaatataatcacatgagccatatgatttagggatggacaaatttttataagaaaaagg----tattttcagaagta |
26425811 |
T |
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| Q |
220 |
taagctaggagtactaaacccaaatacaaatca-----agtacacgtcataaactctcaactctcaaggcacccaa-tggacaatcgcactaaataatca |
313 |
Q |
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| T |
26425812 |
taagctaggagtactaaacccaaatacaaatcaagtacagtacacgttataaactctcaactctcaaggcacccaattggacaatcgcactaaataatca |
26425911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 312 - 441
Target Start/End: Original strand, 26425952 - 26426071
Alignment:
| Q |
312 |
cacttttctttgccacactggaaaag-actttattcctcattattcacatactccaaatcacacccacccaaactgaaatcatgttaaaatgtctgcttg |
410 |
Q |
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| T |
26425952 |
cacttttctttgccacactggaaaattactttattcctcattattcacatactcca-----------cccaaactggaatcatattaaaatatctgcttg |
26426040 |
T |
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| Q |
411 |
aattttatttagaaaattgctttttagcttc |
441 |
Q |
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| T |
26426041 |
aattttatttagaaaattgctttttagcttc |
26426071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 26424310 - 26424365
Alignment:
| Q |
17 |
atgggtggatatattacaccaataatacaattaacaaaaactattcctcatttaacc |
73 |
Q |
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| T |
26424310 |
atgggtggatatctt-cgccaataatacgatcaacaaaaattattcctcatttaacc |
26424365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 312 - 421
Target Start/End: Original strand, 12297376 - 12297486
Alignment:
| Q |
312 |
cacttttctttgccacactggaaaa-gactttattcctcattattcacatactccaaatcacacccacccaaactgaaatcatgttaaaatgtctgcttg |
410 |
Q |
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||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||| |||||||| |||||||| |
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| T |
12297376 |
cacttttctttgctacactggaaaatgactttattcctcattattcagatactccaaatcacagccacccaaactcaaatcaagttaaaatatctgcttg |
12297475 |
T |
|
| Q |
411 |
aattttattta |
421 |
Q |
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||||||||||| |
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| T |
12297476 |
aattttattta |
12297486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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