View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2092_low_11 (Length: 437)
Name: NF2092_low_11
Description: NF2092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2092_low_11 |
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| [»] scaffold0504 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Original strand, 18189195 - 18189613
Alignment:
| Q |
1 |
actcaagttgttcaagatggtgggaatgttaacttggttgaggggaatagatcaagttgtgaggtcggagaaggttctggaatgcatgaggatccgttgc |
100 |
Q |
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| T |
18189195 |
actcaagttgttcaagatggtgggaatgttaaattggttgaggggaatagatcaagttgtgaggtcggagaaggttctggaatgcatgaggatccgttgc |
18189294 |
T |
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| Q |
101 |
tgcgtgtgctgccagactcaatccgaagtctttcggagaaagaaactgcaagtggattggaatctgggagggttgaggagaaaaagaagtataatgtttt |
200 |
Q |
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| T |
18189295 |
tgcgtgtgctaccagactcaatccgaagtctttcggagaaagaaactgcaagtggattggaatctgggagggttgaggagaaaaagaagtataatgtttt |
18189394 |
T |
|
| Q |
201 |
tgatgtattgaaatttctcgcagagacatctgataaaaaagaagatgatgttcttactttgctggaaactctaaagcgttctggtgttaatttacctcgt |
300 |
Q |
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| T |
18189395 |
tgatgtattgaaatttctcgcagagacatctgataaaaaagaagatgatggtcttactttgctggaaactctaaagcgttctggtgttaatttacctcgt |
18189494 |
T |
|
| Q |
301 |
ccaagttggtggcctgaggatatgaaatctcaactcttcaacttcgatgataaggaggagaggaaatgaaactctgtcctgatcggnnnnnnngtttgtt |
400 |
Q |
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| T |
18189495 |
ccaagttggtggccggaggatatgaaatctcaactcttcaacttcgatgataaggaggagaggaaatgaaactctgtcctggtcggtttttttgtttgtt |
18189594 |
T |
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| Q |
401 |
tgagggtattgacggttct |
419 |
Q |
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| T |
18189595 |
tgagggtattgacggttct |
18189613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 18189090 - 18189174
Alignment:
| Q |
1 |
actcaagttgttcaagatggtgggaatgttaacttggttgaggggaatagatcaagttgtgaggtcggagaaggttctggaatgc |
85 |
Q |
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| T |
18189090 |
actcaagttgctccaaatgctggggatgttaacttgaatgaggggaacaattcaatttgtgaggtcggagaaggttctggaatgc |
18189174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 195 - 345
Target Start/End: Original strand, 54631827 - 54631974
Alignment:
| Q |
195 |
tgtttttgatgtattgaaatttctcgcagagacatctgataaaaaagaagatgatgttcttactttgctggaaactctaaagcgttctggtgttaattta |
294 |
Q |
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| T |
54631827 |
tgtttttgatgtgttgaaatttcttgcgaagacttctgttaaa---gaagatgatggtcttactttgttggaaactttaaagcgtgctggtattaaattt |
54631923 |
T |
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| Q |
295 |
cctcgtccaagttggtggcctgaggatatgaaatctcaactcttcaacttc |
345 |
Q |
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| T |
54631924 |
cctcgtccgagctggtggcccgacgatatgaaatctgaactcttcaacttc |
54631974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0504 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0504
Description:
Target: scaffold0504; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 240 - 375
Target Start/End: Original strand, 7958 - 8093
Alignment:
| Q |
240 |
agaagatgatgttcttactttgctggaaactctaaagcgttctggtgttaatttacctcgtccaagttggtggcctgaggatatgaaatctcaactcttc |
339 |
Q |
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||||||||||| |||||||||| ||||| |||| |||||| | ||| |||| || |||||||||||||||||| | || |||||||||||| |||||||| |
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| T |
7958 |
agaagatgatggtcttactttgttggaatctcttaagcgtgccggtattaaatttcctcgtccaagttggtggtcggacgatatgaaatctgaactcttc |
8057 |
T |
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| Q |
340 |
aacttcgatgataaggaggagaggaaatgaaactct |
375 |
Q |
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| T |
8058 |
aactttgatgatgaagagcagaggaagtgaagctct |
8093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 239 - 351
Target Start/End: Complemental strand, 39487232 - 39487120
Alignment:
| Q |
239 |
aagaagatgatgttcttactttgctggaaactctaaagcgttctggtgttaatttacctcgtccaagttggtggcctgaggatatgaaatctcaactctt |
338 |
Q |
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||||||||| |||||||||| || | |||||| |||||| ||||| ||| ||| ||||||||||| |||||||| || ||||||||||| || |||| |
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| T |
39487232 |
aagaagatggtgttcttactgtggtcgaaactgggaagcgtgctggtattacttttcctcgtccaagctggtggccggacgatatgaaatccgaaatctt |
39487133 |
T |
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| Q |
339 |
caacttcgatgat |
351 |
Q |
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||| || |||||| |
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| T |
39487132 |
caattttgatgat |
39487120 |
T |
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