View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2092_low_14 (Length: 356)
Name: NF2092_low_14
Description: NF2092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2092_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 11 - 183
Target Start/End: Complemental strand, 32393916 - 32393745
Alignment:
| Q |
11 |
cacagaccatgcttaccacattccaatttgtcaagtttggaaaagagtggaagaaaggacactctctgatatatctaattttattcacccaaataatttc |
110 |
Q |
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| T |
32393916 |
cacagaccatgcttaccacattccaatttgtcaagtttggaaaagagtggaagaaaggacactct--gatatatgtaattttattcacccaaataatttc |
32393819 |
T |
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| Q |
111 |
acaaaattaatgtgccatcatagcatgtcatcatggctctca-ggggcccgcatagccagatagttaatagtta |
183 |
Q |
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| T |
32393818 |
acaaaattaatgtgccatcatagcatgtcatcatggctctcagggggcccgcatagccagatagttgatagtta |
32393745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 185 - 335
Target Start/End: Complemental strand, 32393455 - 32393306
Alignment:
| Q |
185 |
atgaataagcatatttcttgccaacaattaatttggtcagcttgaagattgctatttagtgctacacatcacccaccaagagttgatacaagtaatatca |
284 |
Q |
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| T |
32393455 |
atgaataagcatatttcttgccaacaattaatt-ggtcagcttgaagattgctatttagtgctacacatcacccaccaagagttgatacaagtaatatca |
32393357 |
T |
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| Q |
285 |
tatatcagaactcaatcacataactgattacaagctccaacatgtgctagc |
335 |
Q |
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| T |
32393356 |
tatatcagaactcaatcacataactgattacaagctccaacatgtgctagc |
32393306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 81 - 335
Target Start/End: Complemental strand, 26162783 - 26162528
Alignment:
| Q |
81 |
atatctaattttattcacccaaataatttcacaaaattaat-gtgccatcatagcat-gtcatcatggctctcaggggcccgcatagccagatagttaat |
178 |
Q |
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| T |
26162783 |
atatgtaattttattcacccaaatcatttcacaaaattaattgtgccatcag-gcattgtcatcatggctctcaggatcccacatagccagattgttgat |
26162685 |
T |
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| Q |
179 |
agttagatgaataagcatatttcttgccaacaattaatttggtcagcttgaagattgctatttagtgctacacatcacccaccaagagttgatacaagta |
278 |
Q |
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| T |
26162684 |
agttagatggataaacatatttcctgccaacaattaatt-ggtcatcttgaagattgctatttagtgttacacatcacccaccaagagctagtacaagta |
26162586 |
T |
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| Q |
279 |
atatcatatatcagaactcaatcacataactgattac-aagctccaacatgtgctagc |
335 |
Q |
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| T |
26162585 |
atatcatatattagaattcaattacataactgattacaaagatccaacatgtggtagc |
26162528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 26163142 - 26163085
Alignment:
| Q |
13 |
cagaccatgcttaccacattccaatttgtcaagtttggaaaagagtggaagaaaggac |
70 |
Q |
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| T |
26163142 |
cagaccatgcttaccacactccaatttgtcaagtttgaaaaagagtggaagaaaggac |
26163085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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