View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2092_low_16 (Length: 330)
Name: NF2092_low_16
Description: NF2092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2092_low_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 40310711 - 40311011
Alignment:
| Q |
1 |
attaaaagttgctggtcgtccccaaacatatacacatgatgatacgagaatccacaataacaacataaaaaagataccattgtttttaaaggggtaaaat |
100 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
40310711 |
attaaaagttgctggtcttccccaaaca---------gatgatacgacaatccacaataacaacataaaaaagacaccattgtttttaaaggggtaaaat |
40310801 |
T |
|
| Q |
101 |
atggccatggatgtgtattacgtaatgtaatatattggaagaaaatatttgattgtgcaatgtaaatgagcatagtgtcctatatttatacatgagaatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||| |
|
|
| T |
40310802 |
atggccatggatgtgtattacgtaatgtaatatataggaagaaaatatttgattgtgcaatgtaaacgagagtagtgtccaatatttatacatgagaatt |
40310901 |
T |
|
| Q |
201 |
tggaaaggaaaaagaagagaataatcaatcagtttattgtctcattgaaatggaagatgttaaaacatataacattgctttctatacagctaagggcttg |
300 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40310902 |
tggaaaggaaaaagaaaagaataatcaatcagttcattgtctcattgaaatggaagatgttaaaacatataacattgctttctatacagctaagggcttg |
40311001 |
T |
|
| Q |
301 |
aagtcattag |
310 |
Q |
| |
|
|||||||||| |
|
|
| T |
40311002 |
aagtcattag |
40311011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 40320787 - 40321087
Alignment:
| Q |
1 |
attaaaagttgctggtcgtccccaaacatatacacatgatgatacgagaatccacaataacaacataaaaaagataccattgtttttaaaggggtaaaat |
100 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
40320787 |
attaaaagttgctggtcttccccaaaca---------gatgatacgacaatccacaataacaacataaaaaagacaccattgtttttaaaggggtaaaat |
40320877 |
T |
|
| Q |
101 |
atggccatggatgtgtattacgtaatgtaatatattggaagaaaatatttgattgtgcaatgtaaatgagcatagtgtcctatatttatacatgagaatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||| |
|
|
| T |
40320878 |
atggccatggatgtgtattacgtaatgtaatatataggaagaaaatatttgattgtgcaatgtaaacgagagtagtgtccaatatttatacatgagaatt |
40320977 |
T |
|
| Q |
201 |
tggaaaggaaaaagaagagaataatcaatcagtttattgtctcattgaaatggaagatgttaaaacatataacattgctttctatacagctaagggcttg |
300 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40320978 |
tggaaaggaaaaagaaaagaataatcaatcagttcattgtctcattgaaatggaagatgttaaaacatataacattgctttctatacagctaagggcttg |
40321077 |
T |
|
| Q |
301 |
aagtcattag |
310 |
Q |
| |
|
|||||||||| |
|
|
| T |
40321078 |
aagtcattag |
40321087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 40313687 - 40313981
Alignment:
| Q |
1 |
attaaaagttgctggtcgtccccaaacatatacacatgatgatacgagaatccacaataacaacataaaaaagataccattgtttttaaaggggtaaaat |
100 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
40313687 |
attaaaagttgctggtcttccccaaaca---------gatgatacgacaatccacaataacaacataaaaaagataccattgtttttaaaagggtaaaat |
40313777 |
T |
|
| Q |
101 |
atggccatggatgtgtattacgtaatgtaatatattggaagaaaatatttgattgtgcaatgtaaatgagcatagtgtcctatatttatacatgagaatt |
200 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40313778 |
atggtcatggttgtgtattacgtaatgtaatatataggaagaaaatatttgattgtgcaatgtaaatgagcatagtgtcctatatttatacatgagaatt |
40313877 |
T |
|
| Q |
201 |
tggaaaggaaaaagaagagaataatcaatcagtttattgtctcattgaaatggaagatgttaaaacatataac----attgctttctatacagctaaggg |
296 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
|
|
| T |
40313878 |
tggaaaggaaaacgaagagaataatcaatcagttcattgtctcattgaaatggaagatgttaaaacatataacatatattgctttctatacagctaagtg |
40313977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 40323763 - 40324057
Alignment:
| Q |
1 |
attaaaagttgctggtcgtccccaaacatatacacatgatgatacgagaatccacaataacaacataaaaaagataccattgtttttaaaggggtaaaat |
100 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
40323763 |
attaaaagttgctggtcttccccaaaca---------gatgatacgacaatccacaataacaacataaaaaagataccattgtttttaaaagggtaaaat |
40323853 |
T |
|
| Q |
101 |
atggccatggatgtgtattacgtaatgtaatatattggaagaaaatatttgattgtgcaatgtaaatgagcatagtgtcctatatttatacatgagaatt |
200 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40323854 |
atggtcatggttgtgtattacgtaatgtaatatataggaagaaaatatttgattgtgcaatgtaaatgagcatagtgtcctatatttatacatgagaatt |
40323953 |
T |
|
| Q |
201 |
tggaaaggaaaaagaagagaataatcaatcagtttattgtctcattgaaatggaagatgttaaaacatataac----attgctttctatacagctaaggg |
296 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
|
|
| T |
40323954 |
tggaaaggaaaacgaagagaataatcaatcagttcattgtctcattgaaatggaagatgttaaaacatataacatatattgctttctatacagctaagtg |
40324053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 202 - 296
Target Start/End: Original strand, 40330476 - 40330570
Alignment:
| Q |
202 |
ggaaaggaaaaagaagagaataatcaatcagtttattgtctcattgaaatggaagatgttaaaacatataacattgctttctatacagctaaggg |
296 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40330476 |
ggaaaggaaaaagaagagaataataaatcagttcattgtccaattaaaatggaagatgttaaaacatataacattgctttctatacagctaaggg |
40330570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 40330253 - 40330362
Alignment:
| Q |
1 |
attaaaagttgctggtcgtccccaaa-catatacacatgatgatacgagaatccacaataacaacataaaaaagataccattgtttttaaaggggtaaaa |
99 |
Q |
| |
|
||||||||||||||||| |||||||| || | |||| |||||| ||||||||||| ||||| |||||||||| || ||||| |||||| ||| |||| |
|
|
| T |
40330253 |
attaaaagttgctggtcttccccaaaccaaaaacac---atgataagagaatccacatcaacaatataaaaaagacactattgtgtttaaaaggggaaaa |
40330349 |
T |
|
| Q |
100 |
tatggccatggat |
112 |
Q |
| |
|
||||||||||||| |
|
|
| T |
40330350 |
tatggccatggat |
40330362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University