View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2092_low_20 (Length: 281)
Name: NF2092_low_20
Description: NF2092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2092_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 3e-88; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 11 - 267
Target Start/End: Complemental strand, 26807782 - 26807527
Alignment:
| Q |
11 |
cataggcaagcaatcactaacaataattacaatgactg--ataattacaaatgattgacacaatcactagatcttgtcattaaacaccccccaacaaaac |
108 |
Q |
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| T |
26807782 |
cataggcaagcaatcacgaacaataattacaatgattgacacaattacta--gatctgtac-atcaatagatcttgtcattaaacaccccccaacaaaac |
26807686 |
T |
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| Q |
109 |
ttcatcaagtaagcctgattcactacccttttcattagcgttaatctcgttaagaattacgattaatgccactatgaaagcataatcaacattgggataa |
208 |
Q |
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| T |
26807685 |
ttcatcaagtaagcctgattcactacccttttcatcagcgttaatctcgtttagaatcacgatcaatgccactataaaagcataatcaacattgggataa |
26807586 |
T |
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| Q |
209 |
accgtgaccatgaaatggtctttaccaattaaaagactctgaacagtgtgctttttgtg |
267 |
Q |
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| T |
26807585 |
atcgtgaccatgaaatggtctttgccaattaaaagactctgaacagtgtgctttttgtg |
26807527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 147 - 267
Target Start/End: Original strand, 26582758 - 26582878
Alignment:
| Q |
147 |
cgttaatctcgttaagaattacgattaatgccactatgaaagcataatcaacattgggataaaccgtgaccatgaaatggtctttaccaattaaaagact |
246 |
Q |
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||||||||||||||||||| || |||||||||||||||||||| ||||||||| |||||||||| ||||| ||||||||||||| ||||||||| ||| |
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| T |
26582758 |
cgttaatctcgttaagaatcacaattaatgccactatgaaagcgtaatcaacactgggataaacagtgactgcgaaatggtctttatcaattaaaatact |
26582857 |
T |
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| Q |
247 |
ctgaacagtgtgctttttgtg |
267 |
Q |
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| T |
26582858 |
ctgaatagtgtgctttttgtg |
26582878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 147 - 267
Target Start/End: Complemental strand, 26796673 - 26796553
Alignment:
| Q |
147 |
cgttaatctcgttaagaattacgattaatgccactatgaaagcataatcaacattgggataaaccgtgaccatgaaatggtctttaccaattaaaagact |
246 |
Q |
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| T |
26796673 |
cgttagtctcatcaagaatcacgattaatgccactatgaaagcgtaatcaacattgggataaaccgtgactgagaaatggtctttatccattaaaatact |
26796574 |
T |
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| Q |
247 |
ctgaacagtgtgctttttgtg |
267 |
Q |
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| T |
26796573 |
cgtaacagtgtgctttttgtg |
26796553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 148 - 267
Target Start/End: Complemental strand, 26801595 - 26801476
Alignment:
| Q |
148 |
gttaatctcgttaagaattacgattaatgccactatgaaagcataatcaacattgggataaaccgtgaccatgaaatggtctttaccaattaaaagactc |
247 |
Q |
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||||||||||| |||||| ||||||||||| ||||||||||| ||||||||||||||||| | ||||||||||||| |||||||||||||||| ||| |
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| T |
26801595 |
gttaatctcgtcaagaatcacgattaatgctactatgaaagcgtaatcaacattgggatagattgtgaccatgaaattatctttaccaattaaaatactt |
26801496 |
T |
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| Q |
248 |
tgaacagtgtgctttttgtg |
267 |
Q |
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||||| |||| ||||||||| |
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| T |
26801495 |
tgaaccgtgtactttttgtg |
26801476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 147 - 267
Target Start/End: Complemental strand, 26837803 - 26837683
Alignment:
| Q |
147 |
cgttaatctcgttaagaattacgattaatgccactatgaaagcataatcaacattgggataaaccgtgaccatgaaatggtctttaccaattaaaagact |
246 |
Q |
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||||||||||| |||||| ||||||||||||||||| ||||| ||||||| ||||||||||| || |||||||||||||||||||||||||||| || |
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| T |
26837803 |
cgttaatctcgccaagaatcacgattaatgccactataaaagcgtaatcaatgttgggataaacggtaaccatgaaatggtctttaccaattaaaatgct |
26837704 |
T |
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| Q |
247 |
ctgaacagtgtgctttttgtg |
267 |
Q |
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| || |||||||||||||| |
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| T |
26837703 |
cgtcaccgtgtgctttttgtg |
26837683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 242
Target Start/End: Complemental strand, 26831326 - 26831244
Alignment:
| Q |
160 |
aagaattacgattaatgccactatgaaagcataatcaacattgggataaaccgtgaccatgaaatggtctttaccaattaaaa |
242 |
Q |
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|||||| |||||||| |||||||| ||||| |||||||| |||||| | ||| | |||||||||||||||||| ||||||||| |
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| T |
26831326 |
aagaatcacgattaacgccactataaaagcgtaatcaacgttgggacacacctttaccatgaaatggtctttatcaattaaaa |
26831244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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