View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2092_low_22 (Length: 275)
Name: NF2092_low_22
Description: NF2092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2092_low_22 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0376 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 54917737 - 54918010
Alignment:
| Q |
1 |
ttagtaaaatattcaattatatagagtgatgttgccagtgattttctcattaatatttgctactaccccattatcaaggctcgagtctctaatcggaggg |
100 |
Q |
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| T |
54917737 |
ttagtaaaatattcaattatatatagtgatgttgccagtgattttctcattaatatttgctactaccccattatcaaggctcgagtctctaatcggatgg |
54917836 |
T |
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| Q |
101 |
atgttctccatcgaaagtagttaaactgaacaaacacaatgggagttgggctatgactcatatagctagcaacattcctcgttattgccactcctaaagc |
200 |
Q |
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| T |
54917837 |
atgttctccattgaaagtagttaaactgaacaaacacaatgggagtttggctatgactcatatagctagcaacattcctcattgttgccactcctaaagc |
54917936 |
T |
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| Q |
201 |
aaaatctaatagaggaaccgatagatacaaggaacgcacttattagcatgcatcagagacagatcaccccattgt |
275 |
Q |
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| T |
54917937 |
aaaatctaatacaggaaccgatagatac-gggaacacacttattagcatgtatcagagacaaatcaccccattgt |
54918010 |
T |
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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 15167432 - 15167485
Alignment:
| Q |
127 |
tgaacaaacacaatgggagttgggctatgactcatatagctagcaacattcctc |
180 |
Q |
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| T |
15167432 |
tgaacaaacacatttggagttgggctatgactaatatagctggcaacattcctc |
15167485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 15181515 - 15181568
Alignment:
| Q |
127 |
tgaacaaacacaatgggagttgggctatgactcatatagctagcaacattcctc |
180 |
Q |
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| T |
15181515 |
tgaacaaacacatttggagttgggctatgactaatatagctggcaacattcctc |
15181568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 15476321 - 15476268
Alignment:
| Q |
127 |
tgaacaaacacaatgggagttgggctatgactcatatagctagcaacattcctc |
180 |
Q |
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| T |
15476321 |
tgaacaaacacatttggagttgggctatgactaatatagctggcaacattcctc |
15476268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 23254035 - 23253982
Alignment:
| Q |
127 |
tgaacaaacacaatgggagttgggctatgactcatatagctagcaacattcctc |
180 |
Q |
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| T |
23254035 |
tgaacaaacacatttggagttgggctatgactaatatagctggcaacattcctc |
23253982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0376 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0376
Description:
Target: scaffold0376; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 8529 - 8578
Alignment:
| Q |
127 |
tgaacaaacacaatgggagttgggctatgactcatatagctagcaacatt |
176 |
Q |
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| T |
8529 |
tgaacaaacacattaggagttgggctatgactgatatagctggcaacatt |
8578 |
T |
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