View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2092_low_23 (Length: 270)
Name: NF2092_low_23
Description: NF2092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2092_low_23 |
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| [»] scaffold0554 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 23036641 - 23036892
Alignment:
| Q |
1 |
cgatatataaaaaga-aactaacaaatagcatccaatgctacagagtagagatataagatgcaagcagattttaactattcacctaaatttttcttttga |
99 |
Q |
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||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||| |
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| T |
23036641 |
cgatatataaaaagacaactagtagatagcatccaatgctacagagtagagatataagatgcgagcagattttaattattcatctaaatttttcttttgt |
23036740 |
T |
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| Q |
100 |
aaagtagtttttcttcttcgaagtatttggaaagttaattcgcttaccatgattatggccttgatattgttttttgtcaaggaaaggtcttggtttctac |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
23036741 |
aaagtagtttttcttcttcgaagtatttggaaagttaattcgcttaccattattatggccttgatattgttttttgtcaaggaaaggtcttggtttctgc |
23036840 |
T |
|
| Q |
200 |
catcctcgtaatttaacagaacgtctaccagatcttcttccactttaccttg |
251 |
Q |
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|||||||||||||||| ||||||||||| ||||||||||| ||| ||||||| |
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| T |
23036841 |
catcctcgtaatttaagagaacgtctacgagatcttcttctactctaccttg |
23036892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 133 - 251
Target Start/End: Original strand, 23039651 - 23039769
Alignment:
| Q |
133 |
gttaattcgcttaccatgattatggccttgatattgttttttgtcaaggaaaggtcttggtttctaccatcctcgtaatttaacagaacgtctaccagat |
232 |
Q |
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||||||| |||||||| ||||||||||||||||||||||||||| |||| || || ||||| ||||| ||||| || ||||| ||||||||||| |||| |
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| T |
23039651 |
gttaatttgcttaccaggattatggccttgatattgttttttgttaaggtaaactcctggttgctaccgtcctcatattttaagagaacgtctacgagat |
23039750 |
T |
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| Q |
233 |
cttcttccactttaccttg |
251 |
Q |
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| T |
23039751 |
cttcttctactttaccttg |
23039769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 134 - 251
Target Start/End: Original strand, 23146527 - 23146644
Alignment:
| Q |
134 |
ttaattcgcttaccatgattatggccttgatattgttttttgtcaaggaaaggtcttggtttctaccatcctcgtaatttaacagaacgtctaccagatc |
233 |
Q |
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|||||| |||||||| ||||||||||||||||||||||||||| |||| || || ||||| ||||| ||||| || ||||| |||||||||| |||||| |
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| T |
23146527 |
ttaatttgcttaccaggattatggccttgatattgttttttgttaaggtaaactcctggttgctaccgtcctcatattttaagagaacgtctatcagatc |
23146626 |
T |
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| Q |
234 |
ttcttccactttaccttg |
251 |
Q |
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|||||| ||||||||||| |
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| T |
23146627 |
ttcttctactttaccttg |
23146644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 120 - 251
Target Start/End: Original strand, 23033451 - 23033584
Alignment:
| Q |
120 |
aagtatttggaa-agttaatt-cgcttaccatgattatggccttgatattgttttttgtcaaggaaaggtcttggtttctaccatcctcgtaatttaaca |
217 |
Q |
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|||||||||||| |||| ||| ||||||||| |||||| ||||||||||||| |||||| ||| | | ||||||| ||||||||||| || ||||| | |
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| T |
23033451 |
aagtatttggaagagtttattacgcttaccaagattatagccttgatattgtcttttgttaagaagaaatcttggtcactaccatcctcatattttaaga |
23033550 |
T |
|
| Q |
218 |
gaacgtctaccagatcttcttccactttaccttg |
251 |
Q |
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||| |||||||||||||||| | || |||||||| |
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| T |
23033551 |
gaatgtctaccagatcttctactaccttaccttg |
23033584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 142 - 237
Target Start/End: Original strand, 23017869 - 23017964
Alignment:
| Q |
142 |
cttaccatgattatggccttgatattgttttttgtcaaggaaaggtcttggtttctaccatcctcgtaatttaacagaacgtctaccagatcttct |
237 |
Q |
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||||||| |||||||||||||||||||| |||||| || || | ||||||| ||||||||||| || ||||| |||| |||||||||||||||| |
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| T |
23017869 |
cttaccaagattatggccttgatattgtcttttgttaatgagaaatcttggtcactaccatcctcatattttaagagaatgtctaccagatcttct |
23017964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 235
Target Start/End: Original strand, 23149496 - 23149589
Alignment:
| Q |
142 |
cttaccatgattatggccttgatattgttttttgtcaaggaaaggtcttggtttctaccatcctcgtaatttaacagaacgtctaccagatctt |
235 |
Q |
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||||||| |||||||||||||||||||| ||| |||||| ||| || | ||| || ||||| || || |||| ||||| ||||||||||||| |
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| T |
23149496 |
cttaccaagattatggccttgatattgtctttggtcaagaaaaattccttgttgctgccatcttcatattttatgagaacatctaccagatctt |
23149589 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 108 - 250
Target Start/End: Original strand, 21780514 - 21780658
Alignment:
| Q |
108 |
ttttcttcttcgaagtatttggaa-ag-ttaattcgcttaccatgattatggccttgatattgttttttgtcaaggaaaggtcttggtttctaccatcct |
205 |
Q |
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|||||||||||||||||||||||| || |||||| ||||||||| ||||||||||||||||||| |||||| ||||||| || |||| |||||||||| |
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| T |
21780514 |
ttttcttcttcgaagtatttggaagagattaattggcttaccattattatggccttgatattgtcttttgttaaggaaaaatccaggttgctaccatcct |
21780613 |
T |
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| Q |
206 |
cgtaatttaacagaacgtctaccagatcttcttccactttacctt |
250 |
Q |
| |
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| || ||||| ||||||||||| ||||||||||| |||| ||||| |
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| T |
21780614 |
catattttaagagaacgtctacgagatcttcttctacttcacctt |
21780658 |
T |
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Target: scaffold0554 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 239
Target Start/End: Complemental strand, 5901 - 5803
Alignment:
| Q |
141 |
gcttaccatgattatggccttgatattgttttttgtcaaggaaaggtcttggtttctaccatcctcgtaatttaacagaacgtctaccagatcttcttc |
239 |
Q |
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|||||||||||| ||||| |||||||||| |||||| ||||||| || | ||| |||||||| || || ||||| |||||||||| ||||||||||| |
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| T |
5901 |
gcttaccatgataatggctttgatattgtcttttgttaaggaaaactccttgttgctaccatcttcatattttaagagaacgtctaatagatcttcttc |
5803 |
T |
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