View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2092_low_29 (Length: 223)

Name: NF2092_low_29
Description: NF2092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2092_low_29
NF2092_low_29
[»] chr3 (56 HSPs)
chr3 (29-216)||(8453054-8453241)
chr3 (1-182)||(8470013-8470194)
chr3 (15-217)||(8570364-8570566)
chr3 (7-175)||(6796016-6796184)
chr3 (7-175)||(6945728-6945899)
chr3 (62-223)||(7586283-7586444)
chr3 (29-182)||(6840319-6840475)
chr3 (64-223)||(6522944-6523103)
chr3 (64-223)||(6528475-6528634)
chr3 (64-223)||(6841035-6841194)
chr3 (66-217)||(6592810-6592961)
chr3 (64-177)||(6521864-6521977)
chr3 (64-181)||(6521999-6522116)
chr3 (64-177)||(6522269-6522382)
chr3 (64-177)||(6522809-6522922)
chr3 (64-171)||(6840900-6841007)
chr3 (7-174)||(8588273-8588440)
chr3 (29-223)||(6450221-6450415)
chr3 (66-188)||(6880966-6881088)
chr3 (64-181)||(6522134-6522251)
chr3 (64-177)||(6522539-6522652)
chr3 (29-175)||(6481409-6481555)
chr3 (29-223)||(6730149-6730343)
chr3 (66-188)||(6915551-6915673)
chr3 (64-172)||(6556176-6556284)
chr3 (64-223)||(6734086-6734245)
chr3 (64-223)||(6781418-6781577)
chr3 (66-188)||(6723536-6723658)
chr3 (64-172)||(6556041-6556149)
chr3 (64-181)||(6840627-6840747)
chr3 (66-188)||(7748452-7748574)
chr3 (87-175)||(6528363-6528451)
chr3 (64-171)||(6840765-6840872)
chr3 (25-188)||(6932042-6932205)
chr3 (64-181)||(6521729-6521846)
chr3 (70-217)||(6236146-6236293)
chr3 (64-172)||(6840492-6840600)
chr3 (61-188)||(5266529-5266656)
chr3 (66-181)||(6522406-6522521)
chr3 (66-181)||(6522676-6522791)
chr3 (66-188)||(13272010-13272132)
chr3 (87-180)||(6521617-6521710)
chr3 (66-217)||(6167318-6167469)
chr3 (80-188)||(6850749-6850857)
chr3 (58-168)||(4390366-4390476)
chr3 (66-188)||(6264132-6264254)
chr3 (66-188)||(6898538-6898660)
chr3 (71-180)||(6243775-6243884)
chr3 (87-175)||(6734413-6734501)
chr3 (87-175)||(6781162-6781250)
chr3 (58-175)||(5248640-5248757)
chr3 (87-201)||(6555929-6556043)
chr3 (92-188)||(5297195-5297291)
chr3 (143-223)||(6942348-6942428)
chr3 (64-138)||(6734315-6734389)
chr3 (64-138)||(6781274-6781348)
[»] scaffold1643 (1 HSPs)
scaffold1643 (1-223)||(582-807)
[»] scaffold0425 (3 HSPs)
scaffold0425 (64-223)||(9224-9383)
scaffold0425 (87-175)||(8977-9065)
scaffold0425 (64-165)||(9089-9190)
[»] scaffold0958 (1 HSPs)
scaffold0958 (62-182)||(1249-1369)
[»] chr7 (1 HSPs)
chr7 (14-170)||(6574734-6574890)


Alignment Details
Target: chr3 (Bit Score: 136; Significance: 4e-71; HSPs: 56)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 29 - 216
Target Start/End: Complemental strand, 8453241 - 8453054
Alignment:
Q  29 cttgaagttttgaaatttgagatgatgaacaattgggaggaatggttgtgtcttgaagggtttcctttgcttaaaaagctttctataagaaattgtccca 128  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| | |||||||    
T  8453241 cttgaagttttgaaatttgagaagatgaacaattgggaggaatggttgtgtcttgaagggtttcctttgcttaaagagctttatataagagaatgtccca 8453142  T
Q  129 aattgaaaagggctctgcctcaacaccttccttctttgcaaaaattggagattaatgattacaagatgttggaagcatcaattcccaa 216  Q
    ||||||||| | | ||||||||||||||||||||||| |||||||||   |||||||||| |||||||||||||||||||||||||||    
T  8453141 aattgaaaatgtccctgcctcaacaccttccttctttacaaaaattgttcattaatgattgcaagatgttggaagcatcaattcccaa 8453054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 8470194 - 8470013
Alignment:
Q  1 caatttaacaaatgttccgttcttgtcccttgaagttttgaaatttgagatgatgaacaattgggaggaatggttgtgtcttgaagggtttcctttgctt 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8470194 caattcaacaaatgttccgttcttgtcccttgaagttttgaaatttgtgaagatgaacagttgggaggaatggttgtgtcttgaagggtttcctttgctt 8470095  T
Q  101 aaaaagctttctataagaaattgtcccaaattgaaaagggctctgcctcaacaccttccttctttgcaaaaattggagatta 182  Q
    ||| |||||||||||| ||  |||||| |||||| ||| ||  |||||||||||||||||||||| |||||||| |||||||    
T  8470094 aaagagctttctataaaaagctgtcccgaattgagaagcgcattgcctcaacaccttccttctttacaaaaattagagatta 8470013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 15 - 217
Target Start/End: Original strand, 8570364 - 8570566
Alignment:
Q  15 ttccgttcttgtcccttgaagttttgaaatttgagatgatgaacaattgggaggaatggttgtgtcttgaagggtttcctttgcttaaaaagctttctat 114  Q
    ||||||||  |||||||||||||||| ||||||    |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  8570364 ttccgttcaggtcccttgaagttttggaatttgcatggatgaacaattgggaggaatggttttgtattgaagggtttcctttgcttaaaaagctttctat 8570463  T
Q  115 aagaaattgtcccaaattgaaaagggctctgcctcaacaccttccttctttgcaaaaattggagattaatgattacaagatgttggaagcatcaattccc 214  Q
    |||| |||||| || |||||||||||| ||||||| ||||||||||||||| |||||| ||||||| | ||||| ||||| |||||| || |||||||||    
T  8570464 aagatattgtcacagattgaaaagggccctgcctcgacaccttccttctttacaaaaactggagatcagtgattgcaagaagttggaggcttcaattccc 8570563  T
Q  215 aag 217  Q
    |||    
T  8570564 aag 8570566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 7 - 175
Target Start/End: Original strand, 6796016 - 6796184
Alignment:
Q  7 aacaaatgttccgttcttgtcccttgaagttttgaaatttgagatgatgaacaattgggaggaatggttgtgtcttgaagggtttcctttgcttaaaaag 106  Q
    |||||||||| |||||  ||||||||| |||||||||||||||  |||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  6796016 aacaaatgtttcgttcaggtcccttgaggttttgaaatttgaggagatggacaattgggaggaatggttttgtcttgaagggtttcctttgcttaaagag 6796115  T
Q  107 ctttctataagaaattgtcccaaattgaaaagggctctgcctcaacaccttccttctttgcaaaaattg 175  Q
    |||| ||||| || ||||| | ||||||||||||||| ||||||| ||||||||||||| |||||||||    
T  6796116 ctttatataacaagttgtcacgaattgaaaagggctcagcctcaaaaccttccttctttacaaaaattg 6796184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 7 - 175
Target Start/End: Complemental strand, 6945899 - 6945728
Alignment:
Q  7 aacaaatgttccgttcttgtcccttgaagttttgaaatttgagatgatgaacaattgggaggaatggttgtgtcttgaagggtttcctttgcttaaaaag 106  Q
    ||||||||||||||||  ||||||||||||||||||||| |||   |||  |||||||||||||||||| |||| |||| ||||||||||||||||| ||    
T  6945899 aacaaatgttccgttcaggtcccttgaagttttgaaattggagcatatggtcaattgggaggaatggttttgtcctgaaaggtttcctttgcttaaagag 6945800  T
Q  107 ctttctataagaaattgtcccaaattgaaaagggc---tctgcctcaacaccttccttctttgcaaaaattg 175  Q
    ||| |||||||||||||||||||||||||||||||    ||||||||||||||||||||||| |||||||||    
T  6945799 cttactataagaaattgtcccaaattgaaaagggccttgctgcctcaacaccttccttctttacaaaaattg 6945728  T

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Target: chr3; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 62 - 223
Target Start/End: Complemental strand, 7586444 - 7586283
Alignment:
Q  62 tgggaggaatggttgtgtcttgaagggtttcctttgcttaaaaagctttctataagaaattgtcccaaattgaaaagggctctgcctcaacaccttcctt 161  Q
    |||||||||||||    ||||||||||||||||||||||||| |||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||    
T  7586444 tgggaggaatggtcacatcttgaagggtttcctttgcttaaagagctttctataaaaaaatgtcccaagttgaaaagggctctgcctcaacaccttcctt 7586345  T
Q  162 ctttgcaaaaattggagattaatgattacaagatgttggaagcatcaattcccaagtgtgat 223  Q
    |||| || ||| |||||||||| |||| ||||| ||||||||||| |||||| |||||||||    
T  7586344 ctttacagaaactggagattaaagattgcaagaagttggaagcattaattccgaagtgtgat 7586283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 29 - 182
Target Start/End: Original strand, 6840319 - 6840475
Alignment:
Q  29 cttgaagttttgaaatttgagatgatgaacaattgggaggaatggttgtgtcttgaagggtttcctttgcttaaaaagctttctataagaaattgtccca 128  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  6840319 cttgaagttttgaaatttgagaagatgaacaattgggagaaatggttttgtcttgaagggtttcctttgcttaaaaagatttctataagaaaatgtccca 6840418  T
Q  129 aattgaaaagggc---tctgcctcaacaccttccttctttgcaaaaattggagatta 182  Q
    ||||||||| |||    |||||| |||||||| ||||||| |||||  |||||||||    
T  6840419 aattgaaaaaggcagtgctgcctaaacaccttacttctttacaaaagctggagatta 6840475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 64 - 223
Target Start/End: Original strand, 6522944 - 6523103
Alignment:
Q  64 ggaggaatggttgtgtcttgaagggtttcctttgcttaaaaagctttctataagaaattgtcccaaattgaaaagggctctgcctcaacaccttccttct 163  Q
    |||||||| ||| || |||| || |||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6522944 ggaggaattgttatgccttggagagtttcctttgcttaaagagatttctataagaaattgtcccgaattgaaaagggctctgcctcaacaccttccttct 6523043  T
Q  164 ttgcaaaaattggagattaatgattacaagatgttggaagcatcaattcccaagtgtgat 223  Q
    || |||||| || |||||| | ||| ||| | | |||| |||||||||||||||||||||    
T  6523044 ttacaaaaactgaagattagtaattgcaacaagatggaggcatcaattcccaagtgtgat 6523103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 64 - 223
Target Start/End: Original strand, 6528475 - 6528634
Alignment:
Q  64 ggaggaatggttgtgtcttgaagggtttcctttgcttaaaaagctttctataagaaattgtcccaaattgaaaagggctctgcctcaacaccttccttct 163  Q
    |||||||||||| || |||| || |||||||||||||||| || ||||||||| || ||||||| |||||||||||||||||||||||||||||||||||    
T  6528475 ggaggaatggttatgccttggagagtttcctttgcttaaagagatttctataacaagttgtcccgaattgaaaagggctctgcctcaacaccttccttct 6528574  T
Q  164 ttgcaaaaattggagattaatgattacaagatgttggaagcatcaattcccaagtgtgat 223  Q
    || |||||| ||||||||| ||||| ||  | | |||| ||| |||||||||||||||||    
T  6528575 ttacaaaaactggagattattgattgcagcaagatggaggcaacaattcccaagtgtgat 6528634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 64 - 223
Target Start/End: Original strand, 6841035 - 6841194
Alignment:
Q  64 ggaggaatggttgtgtcttgaagggtttcctttgcttaaaaagctttctataagaaattgtcccaaattgaaaagggctctgcctcaacaccttccttct 163  Q
    |||||||| ||| || |||| || |||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6841035 ggaggaattgttatgccttggagagtttcctttgcttaaagagatttctataagaaattgtcccgaattgaaaagggctctgcctcaacaccttccttct 6841134  T
Q  164 ttgcaaaaattggagattaatgattacaagatgttggaagcatcaattcccaagtgtgat 223  Q
    || |||||| || |||||   |||| ||| | | |||| ||||||||||||||| |||||    
T  6841135 ttacaaaaactgcagatttgggattgcaacaagatggaggcatcaattcccaagagtgat 6841194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 66 - 217
Target Start/End: Original strand, 6592810 - 6592961
Alignment:
Q  66 aggaatggttgtgtcttgaagggtttcctttgcttaaaaagctttctataagaaattgtcccaaattgaaaagggctctgcctcaacaccttccttcttt 165  Q
    |||||||||| ||||||||||| || ||||||||| || |||||| ||||| | |||||||||| |||||||| || |||||||||||||||||||||||    
T  6592810 aggaatggttatgtcttgaaggtttccctttgcttcaagagctttgtataaaacattgtcccaagttgaaaagagccctgcctcaacaccttccttcttt 6592909  T
Q  166 gcaaaaattggagattaatgatt-acaagatgttggaagcatcaattcccaag 217  Q
    ||||||||||||||||| |||||  ||||| |||||| || ||||||||||||    
T  6592910 gcaaaaattggagattactgattgccaaga-gttggaggcttcaattcccaag 6592961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 64 - 177
Target Start/End: Original strand, 6521864 - 6521977
Alignment:
Q  64 ggaggaatggttgtgtcttgaagggtttcctttgcttaaaaagctttctataagaaattgtcccaaattgaaaagggctctgcctcaacaccttccttct 163  Q
    |||||||| ||| || |||| || |||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6521864 ggaggaattgttatgccttggagagtttcctttgcttaaagagatttctataagaaattgtcccgaattgaaaagggctctgcctcaacaccttccttct 6521963  T
Q  164 ttgcaaaaattgga 177  Q
    || |||||| ||||    
T  6521964 ttacaaaaactgga 6521977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 64 - 181
Target Start/End: Original strand, 6521999 - 6522116
Alignment:
Q  64 ggaggaatggttgtgtcttgaagggtttcctttgcttaaaaagctttctataagaaattgtcccaaattgaaaagggctctgcctcaacaccttccttct 163  Q
    |||||||| ||| || |||| || |||||||||||||||| || |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  6521999 ggaggaattgttatgccttggagagtttcctttgcttaaagagatttctataagaaattgtcccgaattgaaaagggctctgcatcaacaccttccttct 6522098  T
Q  164 ttgcaaaaattggagatt 181  Q
    || |||||| ||||||||    
T  6522099 ttacaaaaactggagatt 6522116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 64 - 177
Target Start/End: Original strand, 6522269 - 6522382
Alignment:
Q  64 ggaggaatggttgtgtcttgaagggtttcctttgcttaaaaagctttctataagaaattgtcccaaattgaaaagggctctgcctcaacaccttccttct 163  Q
    |||||||| ||| || |||| || |||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6522269 ggaggaattgttatgccttggagagtttcctttgcttaaagagatttctataagaaattgtcccgaattgaaaagggctctgcctcaacaccttccttct 6522368  T
Q  164 ttgcaaaaattgga 177  Q
    || |||||| ||||    
T  6522369 ttacaaaaactgga 6522382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 64 - 177
Target Start/End: Original strand, 6522809 - 6522922
Alignment:
Q  64 ggaggaatggttgtgtcttgaagggtttcctttgcttaaaaagctttctataagaaattgtcccaaattgaaaagggctctgcctcaacaccttccttct 163  Q
    |||||||| ||| || |||| || |||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6522809 ggaggaattgttatgccttggagagtttcctttgcttaaagagatttctataagaaattgtcccgaattgaaaagggctctgcctcaacaccttccttct 6522908  T
Q  164 ttgcaaaaattgga 177  Q
    || |||||| ||||    
T  6522909 ttacaaaaactgga 6522922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 64 - 171
Target Start/End: Original strand, 6840900 - 6841007
Alignment:
Q  64 ggaggaatggttgtgtcttgaagggtttcctttgcttaaaaagctttctataagaaattgtcccaaattgaaaagggctctgcctcaacaccttccttct 163  Q
    |||||||| ||| || |||| || |||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6840900 ggaggaattgttatgccttggagagtttcctttgcttaaagagatttctataagaaattgtcccgaattgaaaagggctctgcctcaacaccttccttct 6840999  T
Q  164 ttgcaaaa 171  Q
    || |||||    
T  6841000 ttacaaaa 6841007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 7 - 174
Target Start/End: Complemental strand, 8588440 - 8588273
Alignment:
Q  7 aacaaatgttccgttcttgtcccttgaagttttgaaatttgagatgatgaacaattgggaggaatggttgtgtcttgaagggtttcctttgcttaaaaag 106  Q
    ||||| |||||| |||  ||| |||||||||||| ||||| |   |||| ||||||||||||||||| | || ||| |||||||||||||||||||||||    
T  8588440 aacaattgttccattcaggtctcttgaagttttggaatttaaacggatggacaattgggaggaatggatatgccttcaagggtttcctttgcttaaaaag 8588341  T
Q  107 ctttctataagaaattgtcccaaattgaaaagggctctgcctcaacaccttccttctttgcaaaaatt 174  Q
    || | ||||||  | |||||  |||||||||||||| |||||||||||||||||||||| ||||||||    
T  8588340 ctatttataagtgaatgtcctgaattgaaaagggctttgcctcaacaccttccttctttacaaaaatt 8588273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 29 - 223
Target Start/End: Original strand, 6450221 - 6450415
Alignment:
Q  29 cttgaagttttgaaatttgagatgatgaacaattgggaggaatggttgtgtcttgaagggtttcctttgcttaaaaagctttctataagaaattgtccca 128  Q
    |||||||| ||||||||||||  | || | ||||||||||||||||| | | |||||| ||||||| | |||||| |||||   ||||||||||||||||    
T  6450221 cttgaagtattgaaatttgagcagttggagaattgggaggaatggttatttattgaagagtttcctctacttaaagagcttgaaataagaaattgtccca 6450320  T
Q  129 aattgaaaagggctctgcctcaacaccttccttctttgcaaaaattggagattaatgattacaagatgttggaagcatcaattcccaagtgtgat 223  Q
    || |||||||||| |||||||||||||||||||||||  |||||||| |||||  |  || |||   |||||| ||||||||||||||| |||||    
T  6450321 aactgaaaagggccctgcctcaacaccttccttctttagaaaaattgaagattgtttgttgcaatgagttggaggcatcaattcccaagggtgat 6450415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 66 - 188
Target Start/End: Complemental strand, 6881088 - 6880966
Alignment:
Q  66 aggaatggttgtgtcttgaagggtttcctttgcttaaaaagctttctataagaaattgtcccaaattgaaaagggctctgcctcaacaccttccttcttt 165  Q
    |||||||||| ||||||||||| || ||||||||| ||||||||| ||||| | |||||||||| |||||||| || || ||||||||||| ||||||||    
T  6881088 aggaatggttatgtcttgaaggtttccctttgcttcaaaagctttgtataaaacattgtcccaagttgaaaagtgcccttcctcaacacctcccttcttt 6880989  T
Q  166 gcaaaaattggagattaatgatt 188  Q
    ||||||||||||||||| |||||    
T  6880988 gcaaaaattggagattattgatt 6880966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 64 - 181
Target Start/End: Original strand, 6522134 - 6522251
Alignment:
Q  64 ggaggaatggttgtgtcttgaagggtttcctttgcttaaaaagctttctataagaaattgtcccaaattgaaaagggctctgcctcaacaccttccttct 163  Q
    |||||||| ||| || |||| || |||||||||||||||| || |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  6522134 ggaggaattgttatgccttggagagtttcctttgcttaaagagatttctataagaaattgtcccgaattgaaaagggctctgcatcaacaccttccttct 6522233  T
Q  164 ttgcaaaaattggagatt 181  Q
    || |||||  ||||||||    
T  6522234 ttacaaaatctggagatt 6522251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 64 - 177
Target Start/End: Original strand, 6522539 - 6522652
Alignment:
Q  64 ggaggaatggttgtgtcttgaagggtttcctttgcttaaaaagctttctataagaaattgtcccaaattgaaaagggctctgcctcaacaccttccttct 163  Q
    |||||||| ||| || |||| || |||||||||||||||| || ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  6522539 ggaggaattgttatgccttggagagtttcctttgcttaaagagatttctataacaaattgtcccgaattgaaaagggctctgcctcaacaccttccttct 6522638  T
Q  164 ttgcaaaaattgga 177  Q
    || |||||| ||||    
T  6522639 ttacaaaaactgga 6522652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 29 - 175
Target Start/End: Original strand, 6481409 - 6481555
Alignment:
Q  29 cttgaagttttgaaatttgagatgatgaacaattgggaggaatggttgtgtcttgaagggtttcctttgcttaaaaagctttctataagaaattgtccca 128  Q
    |||||||||||| ||||| ||  |||| | |||| |||||||||||| |||| |||||||||||  | ||||||| ||||| |||||| | |||||||||    
T  6481409 cttgaagttttggaatttcagcggatggaaaatttggaggaatggttatgtcatgaagggtttctgtcgcttaaagagcttactataaaagattgtccca 6481508  T
Q  129 aattgaaaagggctctgcctcaacaccttccttctttgcaaaaattg 175  Q
    ||||||||||||| || |||||||||||||||||||| || ||||||    
T  6481509 aattgaaaagggcccttcctcaacaccttccttctttacagaaattg 6481555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 29 - 223
Target Start/End: Original strand, 6730149 - 6730343
Alignment:
Q  29 cttgaagttttgaaatttgagatgatgaacaattgggaggaatggttgtgtcttgaagggtttcctttgcttaaaaagctttctataagaaattgtccca 128  Q
    |||||||| ||||||||||||    || | ||||||||||||||||| | | |||||| ||||||| | |||||| |||||   ||||||||||||||||    
T  6730149 cttgaagtattgaaatttgagcaattggagaattgggaggaatggttatttattgaagagtttcctctacttaaagagcttgaaataagaaattgtccca 6730248  T
Q  129 aattgaaaagggctctgcctcaacaccttccttctttgcaaaaattggagattaatgattacaagatgttggaagcatcaattcccaagtgtgat 223  Q
    || |||||||||| |||||||||||||||||||||||  |||||||| |||||  |  || |||   |||||| ||||||||||||||| |||||    
T  6730249 aactgaaaagggccctgcctcaacaccttccttctttagaaaaattgaagattgtttgttgcaaagagttggaggcatcaattcccaagggtgat 6730343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 66 - 188
Target Start/End: Complemental strand, 6915673 - 6915551
Alignment:
Q  66 aggaatggttgtgtcttgaagggtttcctttgcttaaaaagctttctataagaaattgtcccaaattgaaaagggctctgcctcaacaccttccttcttt 165  Q
    |||||||||| ||||||||| | || ||||||||| || |||||| ||||| | |||||||||| ||||||||  | |||||||||||||||||||||||    
T  6915673 aggaatggttatgtcttgaatgtttccctttgcttcaagagctttgtataaaacattgtcccaagttgaaaagttccctgcctcaacaccttccttcttt 6915574  T
Q  166 gcaaaaattggagattaatgatt 188  Q
    ||||||||||||||||| |||||    
T  6915573 gcaaaaattggagattattgatt 6915551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 64 - 172
Target Start/End: Original strand, 6556176 - 6556284
Alignment:
Q  64 ggaggaatggttgtgtcttgaagggtttcctttgcttaaaaagctttctataagaaattgtcccaaattgaaaagggctctgcctcaacaccttccttct 163  Q
    |||||||| ||| || |||| || ||||||||||||||||  | |||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  6556176 ggaggaattgttatgccttggagagtttcctttgcttaaagtgttttctataagaaattgtctcgaattgaaaagggctctgcctcaacaccttccttct 6556275  T
Q  164 ttgcaaaaa 172  Q
    || ||||||    
T  6556276 ttacaaaaa 6556284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 64 - 223
Target Start/End: Complemental strand, 6734245 - 6734086
Alignment:
Q  64 ggaggaatggttgtgtcttgaagggtttcctttgcttaaaaagctttctataagaaattgtcccaaattgaaaagggctctgcctcaacaccttccttct 163  Q
    |||||||||||| || |||| || |||||||||||||||| |  ||||||||   || ||| |  ||||||||||||||||||| |||||||||||||||    
T  6734245 ggaggaatggttatgccttggagagtttcctttgcttaaagatatttctatattcaaatgttctgaattgaaaagggctctgccacaacaccttccttct 6734146  T
Q  164 ttgcaaaaattggagattaatgattacaagatgttggaagcatcaattcccaagtgtgat 223  Q
    || || ||| |||||||||  |||| ||| | |||||||||||||||||| |||||||||    
T  6734145 ttacagaaactggagattagagattgcaacaagttggaagcatcaattcctaagtgtgat 6734086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 64 - 223
Target Start/End: Original strand, 6781418 - 6781577
Alignment:
Q  64 ggaggaatggttgtgtcttgaagggtttcctttgcttaaaaagctttctataagaaattgtcccaaattgaaaagggctctgcctcaacaccttccttct 163  Q
    |||||||||||| || |||| || |||||||||||||||| |  ||||||||   || ||| |  ||||||||||||||||||| |||||||||||||||    
T  6781418 ggaggaatggttatgccttggagagtttcctttgcttaaagatatttctatattcaaatgttctgaattgaaaagggctctgccacaacaccttccttct 6781517  T
Q  164 ttgcaaaaattggagattaatgattacaagatgttggaagcatcaattcccaagtgtgat 223  Q
    || || ||| |||||||||  |||| ||| | |||||||||||||||||| |||||||||    
T  6781518 ttacagaaactggagattagagattgcaacaagttggaagcatcaattcctaagtgtgat 6781577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 66 - 188
Target Start/End: Original strand, 6723536 - 6723658
Alignment:
Q  66 aggaatggttgtgtcttgaagggtttcctttgcttaaaaagctttctataagaaattgtcccaaattgaaaagggctctgcctcaacaccttccttcttt 165  Q
    |||||||||| ||||||||||| || ||||||||  || |||||| ||||| | |||||||||| ||||||||  | |||||||||||||||||||| ||    
T  6723536 aggaatggttatgtcttgaaggtttccctttgctacaagagctttgtataaaacattgtcccaagttgaaaagttccctgcctcaacaccttccttcatt 6723635  T
Q  166 gcaaaaattggagattaatgatt 188  Q
    ||||||||||||||||| |||||    
T  6723636 gcaaaaattggagattattgatt 6723658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 64 - 172
Target Start/End: Original strand, 6556041 - 6556149
Alignment:
Q  64 ggaggaatggttgtgtcttgaagggtttcctttgcttaaaaagctttctataagaaattgtcccaaattgaaaagggctctgcctcaacaccttccttct 163  Q
    ||||||||| || || |||| || |||||||||||||||| || |||  ||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  6556041 ggaggaatgtttatgccttggagagtttcctttgcttaaagagtttttaataagaaattgtcccgaattgaaaagggctcttcctcaacaccttccttct 6556140  T
Q  164 ttgcaaaaa 172  Q
    || ||||||    
T  6556141 ttacaaaaa 6556149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 64 - 181
Target Start/End: Original strand, 6840627 - 6840747
Alignment:
Q  64 ggaggaatggttgtgtcttgaagggtttcctttgcttaaaaagctttctataagaaattgtcccaaattgaaaagggc---tctgcctcaacaccttcct 160  Q
    |||| ||||||| |||||||||||| |||||||||||||| || |||||||||||||||| |||||||| ||||||||    || |||||||||||||||    
T  6840627 ggagaaatggttttgtcttgaagggattcctttgcttaaagagatttctataagaaattgccccaaattaaaaagggccttgctacctcaacaccttcct 6840726  T
Q  161 tctttgcaaaaattggagatt 181  Q
    ||||| |||||| || |||||    
T  6840727 tctttacaaaaactgaagatt 6840747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 66 - 188
Target Start/End: Complemental strand, 7748574 - 7748452
Alignment:
Q  66 aggaatggttgtgtcttgaagggtttcctttgcttaaaaagctttctataagaaattgtcccaaattgaaaagggctctgcctcaacaccttccttcttt 165  Q
    |||||||||| ||||||||| | || |||||||||  | |||||| ||||| | ||||||| || ||||||||  | |||||||||||||||||||||||    
T  7748574 aggaatggttatgtcttgaatgtttccctttgcttcgagagctttgtataaaacattgtccgaagttgaaaagttccctgcctcaacaccttccttcttt 7748475  T
Q  166 gcaaaaattggagattaatgatt 188  Q
    ||||||||||||||||| |||||    
T  7748474 gcaaaaattggagattattgatt 7748452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 87 - 175
Target Start/End: Original strand, 6528363 - 6528451
Alignment:
Q  87 ggtttcctttgcttaaaaagctttctataagaaattgtcccaaattgaaaagggctctgcctcaacaccttccttctttgcaaaaattg 175  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||  |  |||||||||| ||||||||||| |||||||||    
T  6528363 ggtttcctttgcttaaagagctttctataagaaattgtcctaaattgaaaagcaccttgcctcaacagcttccttctttacaaaaattg 6528451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 64 - 171
Target Start/End: Original strand, 6840765 - 6840872
Alignment:
Q  64 ggaggaatggttgtgtcttgaagggtttcctttgcttaaaaagctttctataagaaattgtcccaaattgaaaagggctctgcctcaacaccttccttct 163  Q
    |||||||| ||| || |||| || |||||||||||||||| || ||||||||    |||||||| |||||||||||||||||||||||||||||||||||    
T  6840765 ggaggaattgttatgccttggagagtttcctttgcttaaagagatttctatatccgattgtcccgaattgaaaagggctctgcctcaacaccttccttct 6840864  T
Q  164 ttgcaaaa 171  Q
    || |||||    
T  6840865 ttacaaaa 6840872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 25 - 188
Target Start/End: Complemental strand, 6932205 - 6932042
Alignment:
Q  25 gtcccttgaagttttgaaatttgagatgatgaacaattgggaggaatggttgtgtcttgaagggtttcctttgcttaaaaagctttctataagaaattgt 124  Q
    ||||||||||||||||| ||||||   |||| |   || |||||||||||| |||||||| |||||||||||||||| | ||||||    ||||   ||     
T  6932205 gtcccttgaagttttgatatttgactagatgcattgtttggaggaatggttatgtcttgatgggtttcctttgcttagagagctttactcaagaggatgg 6932106  T
Q  125 cccaaattgaaaagggctctgcctcaacaccttccttctttgcaaaaattggagattaatgatt 188  Q
    | | |||||||||||||||| |||||||||||||||||||| |||||| ||||||||| |||||    
T  6932105 ctcgaattgaaaagggctcttcctcaacaccttccttctttacaaaaactggagattagtgatt 6932042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 64 - 181
Target Start/End: Original strand, 6521729 - 6521846
Alignment:
Q  64 ggaggaatggttgtgtcttgaagggtttcctttgcttaaaaagctttctataagaaattgtcccaaattgaaaagggctctgcctcaacaccttccttct 163  Q
    |||||||| ||| || |||| || |||||||||||||||| || ||||||||     ||||||| |||||||||||||||||| ||||||||||||||||    
T  6521729 ggaggaattgttatgccttggagagtttcctttgcttaaagagatttctatatccttttgtcccgaattgaaaagggctctgcatcaacaccttccttct 6521828  T
Q  164 ttgcaaaaattggagatt 181  Q
    || |||||| ||||||||    
T  6521829 ttacaaaaactggagatt 6521846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 70 - 217
Target Start/End: Complemental strand, 6236293 - 6236146
Alignment:
Q  70 atggttgtgtcttgaagggtttcctttgcttaaaaagctttctataagaaattgtcccaaattgaaaagggctctgcctcaacaccttccttctttgcaa 169  Q
    |||||| |||| || ||| || ||||| |||||| |||||| ||||| | |||||||||| |||||||| |  ||||||||| ||||||||| |||||||    
T  6236293 atggttatgtcgtggaggtttcccttttcttaaagagctttgtataaaacattgtcccaagttgaaaagtgacctgcctcaataccttccttgtttgcaa 6236194  T
Q  170 aaattggagattaatgatt-acaagatgttggaagcatcaattcccaag 217  Q
    ||||||||||||| |||||  ||||| |||||| || ||||||||||||    
T  6236193 aaattggagattattgattgccaaga-gttggaggcgtcaattcccaag 6236146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 64 - 172
Target Start/End: Original strand, 6840492 - 6840600
Alignment:
Q  64 ggaggaatggttgtgtcttgaagggtttcctttgcttaaaaagctttctataagaaattgtcccaaattgaaaagggctctgcctcaacaccttccttct 163  Q
    |||||||| ||| || |||| || |||||||||||||||| || ||| ||||    |||||||||||||||||||||||||||| |||||||||||||||    
T  6840492 ggaggaattgttatgccttggagagtttcctttgcttaaagagatttatatattcgattgtcccaaattgaaaagggctctgccacaacaccttccttct 6840591  T
Q  164 ttgcaaaaa 172  Q
    || ||||||    
T  6840592 ttacaaaaa 6840600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 61 - 188
Target Start/End: Complemental strand, 5266656 - 5266529
Alignment:
Q  61 ttgggaggaatggttgtgtcttgaagggtttcctttgcttaaaaagctttctataagaaattgtcccaaattgaaaagggctctgcctcaacaccttcct 160  Q
    |||| |||||||||| ||| ||||| | || ||||||||| || |||||| ||||  || ||||| |||||||||||    ||| |||||||||||||||    
T  5266656 ttggaaggaatggttatgtgttgaaagtttccctttgcttgaagagctttttatagaaagttgtcacaaattgaaaaaatatctacctcaacaccttcct 5266557  T
Q  161 tctttgcaaaaattggagattaatgatt 188  Q
    |||||||||||||||| |||||||||||    
T  5266556 tctttgcaaaaattggtgattaatgatt 5266529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 66 - 181
Target Start/End: Original strand, 6522406 - 6522521
Alignment:
Q  66 aggaatggttgtgtcttgaagggtttcctttgcttaaaaagctttctataagaaattgtcccaaattgaaaagggctctgcctcaacaccttccttcttt 165  Q
    |||||| ||| || |||| || |||||||||||||||| || ||||||||     ||||||| |||||||||||||||||| ||||||||||||||||||    
T  6522406 aggaattgttatgccttggagagtttcctttgcttaaagagatttctatatccttttgtcccgaattgaaaagggctctgcatcaacaccttccttcttt 6522505  T
Q  166 gcaaaaattggagatt 181  Q
     |||||| ||||||||    
T  6522506 acaaaaactggagatt 6522521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 66 - 181
Target Start/End: Original strand, 6522676 - 6522791
Alignment:
Q  66 aggaatggttgtgtcttgaagggtttcctttgcttaaaaagctttctataagaaattgtcccaaattgaaaagggctctgcctcaacaccttccttcttt 165  Q
    |||||| ||| || |||| || |||||||||||||||| || ||||||||     ||||||| |||||||||||||||||| ||||||||||||||||||    
T  6522676 aggaattgttatgccttggagagtttcctttgcttaaagagatttctatatccttttgtcccgaattgaaaagggctctgcatcaacaccttccttcttt 6522775  T
Q  166 gcaaaaattggagatt 181  Q
     |||||| ||||||||    
T  6522776 acaaaaactggagatt 6522791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 66 - 188
Target Start/End: Original strand, 13272010 - 13272132
Alignment:
Q  66 aggaatggttgtgtcttgaagggtttcctttgcttaaaaagctttctataagaaattgtcccaaattgaaaagggctctgcctcaacaccttccttcttt 165  Q
    |||||||||| ||||||||||| || || |||||| || |||||| |||||   |||||||||| ||||| || ||||||||||| ||| |||||| |||    
T  13272010 aggaatggttatgtcttgaaggtttcccattgcttcaagagctttgtataacgcattgtcccaagttgaagagtgctctgcctcagcacgttccttgttt 13272109  T
Q  166 gcaaaaattggagattaatgatt 188  Q
    |||||| |||||||||| |||||    
T  13272110 gcaaaagttggagattattgatt 13272132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 87 - 180
Target Start/End: Original strand, 6521617 - 6521710
Alignment:
Q  87 ggtttcctttgcttaaaaagctttctataagaaattgtcccaaattgaaaagggctctgcctcaacaccttccttctttgcaaaaattggagat 180  Q
    |||||||| |||||||| |||||| ||||| ||||||||| |||||||||||  | ||||||||||||||| ||||||| ||||||||| ||||    
T  6521617 ggtttcctctgcttaaagagctttatataaaaaattgtcctaaattgaaaagcaccctgcctcaacacctttcttctttacaaaaattgaagat 6521710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 66 - 217
Target Start/End: Complemental strand, 6167469 - 6167318
Alignment:
Q  66 aggaatggttgtgtcttgaagggtttcctttgcttaaaaagctttctataagaaattgtcccaaattgaaaagggctctgcctcaacaccttccttcttt 165  Q
    |||||||||| || |||||||| || ||||||||| || |||||| | ||| | | |||||||| |||||||| ||||||||||| || ||||||| |||    
T  6167469 aggaatggttatgccttgaaggtttccctttgcttcaagagctttgtctaaaacaatgtcccaagttgaaaagtgctctgcctcatcatcttccttgttt 6167370  T
Q  166 gcaaaaattggagattaatgattac-aagatgttggaagcatcaattcccaag 217  Q
    |||||| ||||| |||| ||||| | |||| |||||| || ||||||||||||    
T  6167369 gcaaaagttggaaattattgattgcgaaga-gttggaggcttcaattcccaag 6167318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 80 - 188
Target Start/End: Original strand, 6850749 - 6850857
Alignment:
Q  80 cttgaagggtttcctttgcttaaaaagctttctataagaaattgtcccaaattgaaaagggctctgcctcaacaccttccttctttgcaaaaattggaga 179  Q
    |||||||| || ||||| ||| || |||||| ||||| | ||||||| || |||||||| || |||||||||||||| ||||||| ||||||||||||||    
T  6850749 cttgaaggtttccctttacttcaagagctttgtataaaacattgtccgaagttgaaaagtgccctgcctcaacacctcccttcttagcaaaaattggaga 6850848  T
Q  180 ttaatgatt 188  Q
    ||| |||||    
T  6850849 ttattgatt 6850857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 58 - 168
Target Start/End: Original strand, 4390366 - 4390476
Alignment:
Q  58 caattgggaggaatggttgtgtcttgaagggtttcctttgcttaaaaagctttctataagaaattgtcccaaattgaaaagggctctgcctcaacacctt 157  Q
    ||||||| |||||||||| ||| ||||||| || |||||||||||| ||||||||||| | |||||||| ||||||| ||    ||| || |||||||||    
T  4390366 caattggaaggaatggttatgtgttgaaggtttccctttgcttaaagagctttctatacgtaattgtccaaaattgacaaaatttctaccccaacacctt 4390465  T
Q  158 ccttctttgca 168  Q
    |||||||||||    
T  4390466 ccttctttgca 4390476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 66 - 188
Target Start/End: Complemental strand, 6264254 - 6264132
Alignment:
Q  66 aggaatggttgtgtcttgaagggtttcctttgcttaaaaagctttctataagaaattgtcccaaattgaaaagggctctgcctcaacaccttccttcttt 165  Q
    |||||||||| |||||||| || || |||||  ||||| |||||||| |||   |||||||||||||||||||  | |||||| | ||||| ||||||||    
T  6264254 aggaatggttatgtcttgatggtttccctttagttaaagagctttctctaaatcattgtcccaaattgaaaagtaccctgccttatcacctcccttcttt 6264155  T
Q  166 gcaaaaattggagattaatgatt 188  Q
    || |||||||||||||| |||||    
T  6264154 gctaaaattggagattattgatt 6264132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 66 - 188
Target Start/End: Complemental strand, 6898660 - 6898538
Alignment:
Q  66 aggaatggttgtgtcttgaagggtttcctttgcttaaaaagctttctataagaaattgtcccaaattgaaaagggctctgcctcaacaccttccttcttt 165  Q
    |||||||||| ||||||||| | |||| ||||||| || |||||| ||| | | ||||||| || ||||||||  | |||||||||||||||||||||||    
T  6898660 aggaatggttatgtcttgaatgttttcatttgcttcaagagctttgtatcaaacattgtccgaagttgaaaagttccctgcctcaacaccttccttcttt 6898561  T
Q  166 gcaaaaattggagattaatgatt 188  Q
    |||||| ||| | |||| |||||    
T  6898560 gcaaaagttgaaaattattgatt 6898538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 71 - 180
Target Start/End: Complemental strand, 6243884 - 6243775
Alignment:
Q  71 tggttgtgtcttgaagggtttcctttgcttaaaaagctttctataagaaattgtcccaaattgaaaagggctctgcctcaacaccttccttctttgcaaa 170  Q
    ||||| ||| ||||||| || |||||||| ||| ||||||| |||||| | |||||||| |||||||||   ||||||||||| |||||||  |||||||    
T  6243884 tggttatgtattgaaggtttccctttgctgaaagagctttcaataagatactgtcccaagttgaaaaggaaactgcctcaacatcttccttgcttgcaaa 6243785  T
Q  171 aattggagat 180  Q
    ||||||||||    
T  6243784 aattggagat 6243775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 87 - 175
Target Start/End: Complemental strand, 6734501 - 6734413
Alignment:
Q  87 ggtttcctttgcttaaaaagctttctataagaaattgtcccaaattgaaaagggctctgcctcaacaccttccttctttgcaaaaattg 175  Q
    ||||||||||||||| | |||||||||||| ||||||||| ||| ||||| |  | ||||||||||| ||||||||||| |||||||||    
T  6734501 ggtttcctttgcttatagagctttctataacaaattgtcctaaactgaaaggcaccctgcctcaacatcttccttctttacaaaaattg 6734413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 87 - 175
Target Start/End: Original strand, 6781162 - 6781250
Alignment:
Q  87 ggtttcctttgcttaaaaagctttctataagaaattgtcccaaattgaaaagggctctgcctcaacaccttccttctttgcaaaaattg 175  Q
    ||||||||||||||| | |||||||||||| ||||||||| ||| ||||| |  | ||||||||||| ||||||||||| |||||||||    
T  6781162 ggtttcctttgcttatagagctttctataacaaattgtcctaaactgaaaggcaccctgcctcaacatcttccttctttacaaaaattg 6781250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 58 - 175
Target Start/End: Complemental strand, 5248757 - 5248640
Alignment:
Q  58 caattgggaggaatggttgtgtcttgaagggtttcctttgcttaaaaagctttctataagaaattgtcccaaattgaaaagggctctgcctcaacacctt 157  Q
    ||||||| || ||||||| ||| ||||  | || |||||||||||| ||||||||||||||||||||||||||||| |||  | ||| ||  || |||||    
T  5248757 caattggaagaaatggttatgtgttgagtgtttccctttgcttaaacagctttctataagaaattgtcccaaattgcaaaaaggtctacccaaaaacctt 5248658  T
Q  158 ccttctttgcaaaaattg 175  Q
    |||||| ||||| |||||    
T  5248657 ccttctctgcaacaattg 5248640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 87 - 201
Target Start/End: Original strand, 6555929 - 6556043
Alignment:
Q  87 ggtttcctttgcttaaaaagctttctataagaaattgtcccaaattgaaaagggctctgcctcaacaccttccttctttgcaaaaattggagattaatga 186  Q
    |||||||| |||||||| |||||| ||||  ||||||||| ||||||||||| |   |||||||||| ||||| ||||| ||||| |||  ||| |||||    
T  6555929 ggtttcctctgcttaaagagctttatatagaaaattgtcctaaattgaaaagagtattgcctcaacatcttccatctttacaaaatttgtggatcaatga 6556028  T
Q  187 ttacaagatgttgga 201  Q
    || ||| ||||||||    
T  6556029 ttgcaacatgttgga 6556043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 188
Target Start/End: Complemental strand, 5297291 - 5297195
Alignment:
Q  92 cctttgcttaaaaagctttctataagaaattgtcccaaattgaaaagggctctgcctcaacaccttccttctttgcaaaaattggagattaatgatt 188  Q
    |||||||| ||| |||| || |||||| | || || || |||||||||   ||||||||||| ||||||||||||||||||||| |||||| |||||    
T  5297291 cctttgctgaaagagctgtcaataagatactgccctaagttgaaaaggaaactgcctcaacatcttccttctttgcaaaaattgaagattagtgatt 5297195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 223
Target Start/End: Complemental strand, 6942428 - 6942348
Alignment:
Q  143 ctgcctcaacaccttccttctttgcaaaaattggagattaatgattacaagatgttggaagcatcaattcccaagtgtgat 223  Q
    ||||||||||||||||||||||| |||||| || |||||  | ||| ||| | | |||| |||||||||||||||||||||    
T  6942428 ctgcctcaacaccttccttctttacaaaaactgaagattggttattgcaacaagatggaggcatcaattcccaagtgtgat 6942348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 138
Target Start/End: Complemental strand, 6734389 - 6734315
Alignment:
Q  64 ggaggaatggttgtgtcttgaagggtttcctttgcttaaaaagctttctataagaaattgtcccaaattgaaaag 138  Q
    |||||||||||| |||||||||||||||| ||  |||||| |||||| ||||||  ||||| ||||||| |||||    
T  6734389 ggaggaatggttatgtcttgaagggtttctttctcttaaagagctttatataagtcattgttccaaattcaaaag 6734315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 138
Target Start/End: Original strand, 6781274 - 6781348
Alignment:
Q  64 ggaggaatggttgtgtcttgaagggtttcctttgcttaaaaagctttctataagaaattgtcccaaattgaaaag 138  Q
    |||||||||||| |||||||||||||||| ||  |||||| |||||| ||||||  ||||| ||||||| |||||    
T  6781274 ggaggaatggttatgtcttgaagggtttctttctcttaaagagctttatataagtcattgttccaaattcaaaag 6781348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1643 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: scaffold1643
Description:

Target: scaffold1643; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 807 - 582
Alignment:
Q  1 caatttaacaaatgttccgttcttgtcccttgaagttttgaaatttgagatgatgaacaattgggaggaatggttgtgtcttgaagggtttcctttgctt 100  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||    
T  807 caatttaacgcatgttccgttcttgtcccttgaagttttgaaatttgagaagttgaacaattgggaggaatggttgtgtcctgaagggtttcctttgctt 708  T
Q  101 aaaaagctttctataagaaattgtcccaaattgaaaaggg---ctctgcctcaacaccttccttctttgcaaaaattggagattaatgattacaagatgt 197  Q
    ||| ||||| |||||||||| |||||||||||  ||||||   ||||||||||||||||||||| ||| |||||| || | |||| ||||| ||| | |     
T  707 aaagagcttactataagaaagtgtcccaaattagaaagggccactctgcctcaacaccttccttttttacaaaaactgaatattactgattgcaacaaga 608  T
Q  198 tggaagcatcaattcccaagtgtgat 223  Q
    |||| ||||||||||||||| |||||    
T  607 tggaggcatcaattcccaagagtgat 582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 84; Significance: 4e-40; HSPs: 3)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 64 - 223
Target Start/End: Original strand, 9224 - 9383
Alignment:
Q  64 ggaggaatggttgtgtcttgaagggtttcctttgcttaaaaagctttctataagaaattgtcccaaattgaaaagggctctgcctcaacaccttccttct 163  Q
    |||||||||||| || |||| || |||||||||||||||  || ||||||||   ||||||||| ||||||||||||||||||| |||||||||||||||    
T  9224 ggaggaatggttatgccttggagagtttcctttgcttaacgagttttctatatccaattgtcccgaattgaaaagggctctgccacaacaccttccttct 9323  T
Q  164 ttgcaaaaattggagattaatgattacaagatgttggaagcatcaattcccaagtgtgat 223  Q
    || |||||||||   |||||||||| ||| | ||||||||||||||||||||||||||||    
T  9324 ttacaaaaattgttcattaatgattgcaacaagttggaagcatcaattcccaagtgtgat 9383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 87 - 175
Target Start/End: Original strand, 8977 - 9065
Alignment:
Q  87 ggtttcctttgcttaaaaagctttctataagaaattgtcccaaattgaaaagggctctgcctcaacaccttccttctttgcaaaaattg 175  Q
    |||||||| |||||||| |||||| ||||  ||||||||| |||||||||||  | ||||||||||| ||||||||||| |||||||||    
T  8977 ggtttcctctgcttaaagagctttatatagaaaattgtcctaaattgaaaagcaccctgcctcaacatcttccttctttacaaaaattg 9065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 64 - 165
Target Start/End: Original strand, 9089 - 9190
Alignment:
Q  64 ggaggaatggttgtgtcttgaagggtttcctttgcttaaaaagctttctataagaaattgtcccaaattgaaaagggctctgcctcaacaccttccttct 163  Q
    |||||||||||| |||||||||||||||| ||  |||||| ||||||||||| |  ||||| | ||||| |||||||   |||||||||| |||||||||    
T  9089 ggaggaatggttatgtcttgaagggtttctttctcttaaagagctttctatatggtattgttctaaattcaaaagggtattgcctcaacatcttccttct 9188  T
Q  164 tt 165  Q
    ||    
T  9189 tt 9190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0958 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0958
Description:

Target: scaffold0958; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 62 - 182
Target Start/End: Original strand, 1249 - 1369
Alignment:
Q  62 tgggaggaatggttgtgtcttgaagggtttcctttgcttaaaaagctttctataagaaattgtcccaaattgaaaagggctctgcctcaacaccttcctt 161  Q
    ||||| |||||||  ||||||||||||||||||||||||||||| |||||||||||| |||||| || |||||||||||| || |||| |||||||||||    
T  1249 tgggaagaatggtattgtcttgaagggtttcctttgcttaaaaatctttctataagatattgtcgcatattgaaaagggccctacctcgacaccttcctt 1348  T
Q  162 ctttgcaaaaattggagatta 182  Q
    |||| |||| |||||| ||||    
T  1349 ctttacaaatattggatatta 1369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 170
Target Start/End: Original strand, 6574734 - 6574890
Alignment:
Q  14 gttccgttcttgtcccttgaagttttgaaatttgagatgatgaacaattgggaggaatggttgtgtcttgaagggtttcctttgcttaaaaagctttcta 113  Q
    |||||||||  |||||||||| ||||| |||||| ||  |||  | | ||| |||||||||| |  |||||| ||||||| ||||| ||| |||||| ||    
T  6574734 gttccgttcaggtcccttgaatttttggaatttgggaatatgcccgaatggaaggaatggttttaacttgaacggtttcccttgctcaaagagctttata 6574833  T
Q  114 taagaaattgtcccaaattgaaaagggctctgcctcaacaccttccttctttgcaaa 170  Q
    ||    ||||||||||||||||||||   ||||||||| |||||| |||||||||||    
T  6574834 tagaccattgtcccaaattgaaaaggttcctgcctcaaaaccttctttctttgcaaa 6574890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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