View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2092_low_30 (Length: 218)
Name: NF2092_low_30
Description: NF2092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2092_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 40310716 - 40310522
Alignment:
| Q |
1 |
tttaatcaagactttcatgtcacgtggtctgagccccatatcaagcaaattgatcaaggcaggactatccaactcaccctagaccaaggttctggtaagt |
100 |
Q |
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||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||| |
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| T |
40310716 |
tttaatcaagattttcatgtcacgtggtcagaaccccatatcaagcaaattgatcaaggcagaactatccaacttaccctagaccaaggctctggtaagt |
40310617 |
T |
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| Q |
101 |
aacatatgttattatatactataaataacaaatactatactaatataatttggataggtcatgttacctatttatctatcaaaaatacttaattt |
195 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40310616 |
aacttatgttattatatactataaataacaaatactatactaatataatttggataagtcatgttacctatttatctatcaaaaatacttaattt |
40310522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 40320792 - 40320598
Alignment:
| Q |
1 |
tttaatcaagactttcatgtcacgtggtctgagccccatatcaagcaaattgatcaaggcaggactatccaactcaccctagaccaaggttctggtaagt |
100 |
Q |
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||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||| |
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| T |
40320792 |
tttaatcaagattttcatgtcacgtggtcagaaccccatatcaagcaaattgatcaaggcagaactatccaacttaccctagaccaaggctctggtaagt |
40320693 |
T |
|
| Q |
101 |
aacatatgttattatatactataaataacaaatactatactaatataatttggataggtcatgttacctatttatctatcaaaaatacttaattt |
195 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40320692 |
aacttatgttattatatactataaataacaaatactatactaatataatttggataagtcatgttacctatttatctatcaaaaatacttaattt |
40320598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 40330258 - 40330064
Alignment:
| Q |
1 |
tttaatcaagactttcatgtcacgtggtctgagccccatatcaagcaaattgatcaaggcaggactatccaactcaccctagaccaaggttctggtaagt |
100 |
Q |
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|
||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||| |
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| T |
40330258 |
tttaatcaagattttcatgtcacgtggtcagaaccccatatcaagcaaattgatcaaggcagaactatccaacttaccctagaccaaggctctggtaagt |
40330159 |
T |
|
| Q |
101 |
aacatatgttattatatactataaataacaaatactatactaatataatttggataggtcatgttacctatttatctatcaaaaatacttaattt |
195 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40330158 |
aacttatgttattatatactataaataacaaatactatactaatataatttggataagtcatgttacctatttatctatcaaaaatacttaattt |
40330064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 40313692 - 40313586
Alignment:
| Q |
1 |
tttaatcaagactttcatgtcacgtggtctgagccccatatcaagcaaattgatcaaggcaggactatccaactcaccctagaccaaggttctggtaagt |
100 |
Q |
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|
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||| ||||| |
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| T |
40313692 |
tttaatcaagactttcatgtcacgtggtcagaaccccatatcaagcaaattgatcaaggcagaactatccaacttaccctagaccaaggctcttgtaagc |
40313593 |
T |
|
| Q |
101 |
aacatat |
107 |
Q |
| |
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||||||| |
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|
| T |
40313592 |
aacatat |
40313586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 40323768 - 40323662
Alignment:
| Q |
1 |
tttaatcaagactttcatgtcacgtggtctgagccccatatcaagcaaattgatcaaggcaggactatccaactcaccctagaccaaggttctggtaagt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||| ||||| |
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| T |
40323768 |
tttaatcaagactttcatgtcacgtggtcagaaccccatatcaagcaaattgatcaaggcagaactatccaacttaccctagaccaaggctcttgtaagc |
40323669 |
T |
|
| Q |
101 |
aacatat |
107 |
Q |
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||||||| |
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| T |
40323668 |
aacatat |
40323662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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