View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2092_low_4 (Length: 506)

Name: NF2092_low_4
Description: NF2092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2092_low_4
NF2092_low_4
[»] chr4 (2 HSPs)
chr4 (19-490)||(49630596-49631058)
chr4 (20-63)||(51754201-51754244)
[»] chr5 (1 HSPs)
chr5 (29-73)||(40434415-40434459)
[»] chr2 (2 HSPs)
chr2 (27-63)||(19684216-19684252)
chr2 (19-75)||(28142898-28142953)
[»] chr3 (2 HSPs)
chr3 (16-59)||(51386413-51386456)
chr3 (27-63)||(46596108-46596144)
[»] chr1 (2 HSPs)
chr1 (27-76)||(8985815-8985864)
chr1 (27-63)||(8930354-8930390)
[»] chr8 (1 HSPs)
chr8 (29-73)||(39513870-39513914)
[»] chr7 (1 HSPs)
chr7 (29-65)||(33767399-33767435)


Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 19 - 490
Target Start/End: Original strand, 49630596 - 49631058
Alignment:
Q  19 ttacagatgacaaaaccaaaagtatcatatattacagggggtaaatgactattaatctattgaaaaataaataaataatcaggatattctaagatacatg 118  Q
    ||||||| ||||||| |||||||||||||||||||||||| |||||  ||||||| || ||||||||||||||||||||||||||||||||||||| |||    
T  49630596 ttacagaggacaaaatcaaaagtatcatatattacagggg-taaatacctattaacct-ttgaaaaataaataaataatcaggatattctaagatagatg 49630693  T
Q  119 tctactcgacacatgtaagtctacaattagatgcatatttaatataacatttctctaattttagtgtatctagacttcatccttcnnnnnnnnnnn--ta 216  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||         |||||||||||              ||    
T  49630694 tctactcgacacatgtaagtctacaattagatgtatatttaatataacatttctctaattttag---------acttcatccttaaaaaaaaaaaaaata 49630784  T
Q  217 gtatctagacttcatattaatagatgaaagctgacatatcgtgaatcatcaaaaaatagttaggcaaacaaaatctcttttctcgaagaataaataatgg 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  49630785 gtatctagacttcatattaatagatgaaagctgacatatcgtgaatcatcaaaaaataattaggcaaacaaaatctcttttctcgaagaataaataatgg 49630884  T
Q  317 agaattcttatgtattttgatgttcagctatgtatcgtacttcaaaacaaacctcattcaaaatataattctatttttaaataaagtaatacgataatat 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49630885 agaattcttatgtattttgatgttcagctatgtatcgtacttcaaaacaaacctcattcaaaatataattctatttttaaataaagtaatacgataatat 49630984  T
Q  417 gacatgactttaagaattaaatgataaatacatattgaatcaaactttaggataccattgtgttcactataaat 490  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  49630985 gacatgactttaagaattaaatgataaatacatattaaatcaaactttaggataccattgtgttcactataaat 49631058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 51754201 - 51754244
Alignment:
Q  20 tacagatgacaaaaccaaaagtatcatatattacagggggtaaa 63  Q
    ||||| ||||||||||||||||| | ||||||||||||||||||    
T  51754201 tacaggtgacaaaaccaaaagtaccctatattacagggggtaaa 51754244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 40434415 - 40434459
Alignment:
Q  29 caaaaccaaaagtatcatatattacagggggtaaatgactattaa 73  Q
    |||||||||||||||| |||||||||| ||||||||| |||||||    
T  40434415 caaaaccaaaagtatcttatattacagagggtaaatgtctattaa 40434459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 19684252 - 19684216
Alignment:
Q  27 gacaaaaccaaaagtatcatatattacagggggtaaa 63  Q
    ||||||||||||||| |||||||||||||||||||||    
T  19684252 gacaaaaccaaaagtgtcatatattacagggggtaaa 19684216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 28142898 - 28142953
Alignment:
Q  19 ttacagatgacaaaaccaaaagtatcatatattacagggggtaaatgactattaatc 75  Q
    ||||||| | |||||||||||||  ||||||||| |||||||||||| |||||||||    
T  28142898 ttacagagggcaaaaccaaaagtgacatatatta-agggggtaaatgcctattaatc 28142953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 51386413 - 51386456
Alignment:
Q  16 atattacagatgacaaaaccaaaagtatcatatattacaggggg 59  Q
    |||||||||| ||||||||||||||| || ||||||||||||||    
T  51386413 atattacagaggacaaaaccaaaagtgtcttatattacaggggg 51386456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 46596144 - 46596108
Alignment:
Q  27 gacaaaaccaaaagtatcatatattacagggggtaaa 63  Q
    |||||||||||||||| | ||||||||||||||||||    
T  46596144 gacaaaaccaaaagtaccctatattacagggggtaaa 46596108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 8985815 - 8985864
Alignment:
Q  27 gacaaaaccaaaagtatcatatattacagggggtaaatgactattaatct 76  Q
    |||||||| |||||| || ||||||||||||||||||  |||||||||||    
T  8985815 gacaaaactaaaagtgtcctatattacagggggtaaaacactattaatct 8985864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 8930354 - 8930390
Alignment:
Q  27 gacaaaaccaaaagtatcatatattacagggggtaaa 63  Q
    |||||||||||||||| | ||||||||||||||||||    
T  8930354 gacaaaaccaaaagtaccttatattacagggggtaaa 8930390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 39513914 - 39513870
Alignment:
Q  29 caaaaccaaaagtatcatatattacagggggtaaatgactattaa 73  Q
    |||||||||||||  | |||||||||||||||||||| |||||||    
T  39513914 caaaaccaaaagtgacctatattacagggggtaaatgcctattaa 39513870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 33767399 - 33767435
Alignment:
Q  29 caaaaccaaaagtatcatatattacagggggtaaatg 65  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  33767399 caaaaccaaaagtgtcatatattacaggggataaatg 33767435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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