View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2092_low_5 (Length: 471)

Name: NF2092_low_5
Description: NF2092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2092_low_5
NF2092_low_5
[»] chr8 (22 HSPs)
chr8 (339-455)||(40469959-40470075)
chr8 (339-452)||(3436196-3436309)
chr8 (345-455)||(24019488-24019597)
chr8 (345-455)||(28524159-28524268)
chr8 (345-455)||(39915475-39915584)
chr8 (345-452)||(3647889-3647995)
chr8 (345-452)||(29727482-29727588)
chr8 (345-452)||(34135903-34136009)
chr8 (345-455)||(36409444-36409553)
chr8 (345-454)||(7278987-7279095)
chr8 (345-452)||(4404971-4405077)
chr8 (349-452)||(16787127-16787229)
chr8 (345-440)||(15839252-15839346)
chr8 (345-444)||(23403039-23403137)
chr8 (383-455)||(9878180-9878251)
chr8 (345-405)||(42231915-42231975)
chr8 (356-405)||(2727959-2728008)
chr8 (345-388)||(29632413-29632456)
chr8 (345-385)||(27046841-27046881)
chr8 (390-425)||(15317570-15317605)
chr8 (390-425)||(15497939-15497974)
chr8 (390-425)||(33947267-33947302)
[»] chr1 (12 HSPs)
chr1 (339-455)||(15209380-15209496)
chr1 (339-455)||(41971347-41971463)
chr1 (339-454)||(33490340-33490455)
chr1 (345-455)||(23313954-23314063)
chr1 (345-455)||(11957456-11957565)
chr1 (345-455)||(17446253-17446362)
chr1 (345-455)||(32981156-32981265)
chr1 (345-455)||(7434380-7434491)
chr1 (345-455)||(42310036-42310148)
chr1 (347-405)||(3829961-3830019)
chr1 (345-421)||(35908549-35908625)
chr1 (340-376)||(17874958-17874994)
[»] chr6 (9 HSPs)
chr6 (339-455)||(31028046-31028162)
chr6 (345-455)||(34947924-34948033)
chr6 (345-455)||(33228449-33228559)
chr6 (345-455)||(399578-399687)
chr6 (345-454)||(13838760-13838868)
chr6 (345-455)||(29744229-29744339)
chr6 (345-452)||(28997692-28997798)
chr6 (358-423)||(34253121-34253186)
chr6 (386-425)||(10232292-10232331)
[»] chr4 (43 HSPs)
chr4 (347-447)||(30110928-30111028)
chr4 (345-455)||(17510337-17510446)
chr4 (345-452)||(40530048-40530154)
chr4 (35-117)||(30111222-30111304)
chr4 (345-455)||(44157584-44157693)
chr4 (345-444)||(28876412-28876510)
chr4 (345-444)||(50204185-50204283)
chr4 (345-455)||(13013149-13013258)
chr4 (345-455)||(13390545-13390654)
chr4 (345-455)||(25931714-25931823)
chr4 (345-455)||(34406381-34406490)
chr4 (345-455)||(43356865-43356974)
chr4 (345-455)||(47501734-47501843)
chr4 (345-453)||(13398658-13398765)
chr4 (345-455)||(30076749-30076859)
chr4 (345-423)||(1818647-1818724)
chr4 (345-423)||(10351994-10352072)
chr4 (345-455)||(26438376-26438485)
chr4 (345-452)||(33135542-33135648)
chr4 (339-430)||(48130996-48131086)
chr4 (345-455)||(36381447-36381555)
chr4 (345-452)||(3291995-3292101)
chr4 (349-452)||(42332875-42332977)
chr4 (349-452)||(43142687-43142789)
chr4 (345-423)||(29319451-29319529)
chr4 (345-454)||(37577711-37577819)
chr4 (345-452)||(6689335-6689441)
chr4 (345-452)||(30215844-30215950)
chr4 (345-452)||(35546914-35547020)
chr4 (345-442)||(20130202-20130298)
chr4 (390-455)||(48130939-48131004)
chr4 (366-423)||(29995121-29995178)
chr4 (345-405)||(26449702-26449762)
chr4 (345-405)||(48990280-48990340)
chr4 (345-408)||(7769562-7769625)
chr4 (170-224)||(30111115-30111169)
chr4 (371-425)||(29132134-29132188)
chr4 (390-425)||(9070477-9070512)
chr4 (345-391)||(6236482-6236528)
chr4 (386-425)||(9415887-9415926)
chr4 (387-425)||(20628664-20628702)
chr4 (339-376)||(8897884-8897921)
chr4 (339-376)||(25182837-25182874)
[»] chr7 (20 HSPs)
chr7 (345-455)||(7003586-7003695)
chr7 (345-455)||(7049457-7049566)
chr7 (345-455)||(5556422-5556531)
chr7 (345-455)||(36631776-36631885)
chr7 (345-455)||(34468432-34468541)
chr7 (345-452)||(3113220-3113326)
chr7 (345-455)||(8395084-8395193)
chr7 (345-455)||(14775693-14775802)
chr7 (345-455)||(15226146-15226255)
chr7 (345-452)||(26625707-26625813)
chr7 (345-452)||(38637480-38637586)
chr7 (345-452)||(8866829-8866935)
chr7 (345-452)||(37001337-37001443)
chr7 (345-452)||(43183567-43183673)
chr7 (345-393)||(33686553-33686601)
chr7 (352-400)||(11019694-11019742)
chr7 (345-455)||(36659128-36659229)
chr7 (386-425)||(13072049-13072088)
chr7 (386-425)||(32073587-32073626)
chr7 (387-425)||(21420062-21420100)
[»] chr2 (20 HSPs)
chr2 (339-455)||(7071621-7071736)
chr2 (339-455)||(26238574-26238690)
chr2 (345-455)||(17444133-17444242)
chr2 (345-455)||(18982504-18982613)
chr2 (345-452)||(42442948-42443054)
chr2 (345-455)||(16406089-16406198)
chr2 (345-454)||(35963651-35963759)
chr2 (345-455)||(771694-771803)
chr2 (345-455)||(6402901-6403010)
chr2 (345-455)||(32126286-32126395)
chr2 (345-454)||(31580834-31580942)
chr2 (345-455)||(41250730-41250839)
chr2 (339-407)||(4554395-4554463)
chr2 (345-452)||(8058441-8058547)
chr2 (345-452)||(45419545-45419651)
chr2 (345-455)||(2286867-2286969)
chr2 (345-405)||(26161831-26161891)
chr2 (345-376)||(26656305-26656336)
chr2 (339-376)||(33453146-33453183)
chr2 (344-408)||(45122142-45122206)
[»] chr5 (22 HSPs)
chr5 (339-452)||(28801837-28801950)
chr5 (345-455)||(16155851-16155960)
chr5 (345-454)||(39656625-39656733)
chr5 (345-452)||(16332998-16333104)
chr5 (345-455)||(19986404-19986513)
chr5 (345-454)||(13818938-13819046)
chr5 (345-455)||(10036867-10036976)
chr5 (345-455)||(26282415-26282524)
chr5 (345-455)||(36292718-36292827)
chr5 (345-444)||(1775476-1775574)
chr5 (345-444)||(39435671-39435769)
chr5 (383-455)||(15959080-15959152)
chr5 (345-452)||(17331094-17331200)
chr5 (345-455)||(36292314-36292425)
chr5 (345-417)||(43069843-43069915)
chr5 (345-452)||(12277953-12278059)
chr5 (357-455)||(31500827-31500924)
chr5 (345-421)||(37255625-37255701)
chr5 (345-452)||(31681329-31681435)
chr5 (345-452)||(33431283-33431389)
chr5 (386-444)||(192766-192823)
chr5 (347-376)||(1280761-1280790)
[»] scaffold0154 (1 HSPs)
scaffold0154 (345-455)||(32175-32284)
[»] chr3 (16 HSPs)
chr3 (345-455)||(40080839-40080948)
chr3 (345-455)||(35514956-35515065)
chr3 (339-432)||(1185601-1185694)
chr3 (345-455)||(6268519-6268628)
chr3 (345-455)||(19391107-19391215)
chr3 (345-455)||(22967541-22967650)
chr3 (345-455)||(34083219-34083328)
chr3 (348-423)||(45336849-45336924)
chr3 (345-423)||(19564614-19564692)
chr3 (345-455)||(39772751-39772860)
chr3 (344-444)||(5136264-5136363)
chr3 (345-452)||(45183943-45184049)
chr3 (345-452)||(6929992-6930098)
chr3 (349-452)||(11017372-11017474)
chr3 (366-452)||(33041913-33041998)
chr3 (345-405)||(27936159-27936220)
[»] scaffold0002 (1 HSPs)
scaffold0002 (345-455)||(479554-479663)
[»] scaffold0069 (1 HSPs)
scaffold0069 (345-453)||(18522-18628)
[»] scaffold0495 (1 HSPs)
scaffold0495 (386-425)||(9014-9053)


Alignment Details
Target: chr8 (Bit Score: 97; Significance: 2e-47; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 339 - 455
Target Start/End: Original strand, 40469959 - 40470075
Alignment:
Q  339 ggttcctcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataatt 438  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||    
T  40469959 ggttcctcattttgtcaacaaaagtacaatttaaaatagggttattaattgaaattgaccatgtaatatacgtgaagtctaaaaaattgaccctgtaatt 40470058  T
Q  439 aaataatatgtattctg 455  Q
    |||||| ||||||||||    
T  40470059 aaataacatgtattctg 40470075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 339 - 452
Target Start/End: Complemental strand, 3436309 - 3436196
Alignment:
Q  339 ggttcctcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataatt 438  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||| ||||||||||| ||||||| | || |     
T  3436309 ggttcctcattttgtcaacaaaagtacaatttaaaatagggttattaattgaaattgaccatataagatacgtgaagtctgaaacattgaccatgtagta 3436210  T
Q  439 aaataatatgtatt 452  Q
    |||||| |||||||    
T  3436209 aaataacatgtatt 3436196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 345 - 455
Target Start/End: Original strand, 24019488 - 24019597
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    ||||||| |||||||||||||||||||||||| ||||||||||| ||||| |||| |||||||||| |||||||| |||||||||||| |||||||||||    
T  24019488 tcattttatcaacaaaagtacaatttaaaatagggttattaatttaaattaaccacgtaatatacgtgaagtctg-aaaattgaccctgtaattaaataa 24019586  T
Q  445 tatgtattctg 455  Q
     ||||||||||    
T  24019587 catgtattctg 24019597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 345 - 455
Target Start/End: Complemental strand, 28524268 - 28524159
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    ||||||| |||||||||||||||||||||||| ||||||||||| ||||| |||| |||||||||| |||||||| |||||||||||| |||||||||||    
T  28524268 tcattttatcaacaaaagtacaatttaaaatagggttattaatttaaattaaccacgtaatatacgtgaagtctg-aaaattgaccctgtaattaaataa 28524170  T
Q  445 tatgtattctg 455  Q
     ||||||||||    
T  28524169 catgtattctg 28524159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 345 - 455
Target Start/End: Complemental strand, 39915584 - 39915475
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    ||||||| |||||||||||||||||||||||| ||||||||||| ||||| |||| |||||||||| |||||||| |||||||||||| |||||||||||    
T  39915584 tcattttatcaacaaaagtacaatttaaaatagggttattaatttaaattaaccacgtaatatacgtgaagtctg-aaaattgaccctgtaattaaataa 39915486  T
Q  445 tatgtattctg 455  Q
     ||||||||||    
T  39915485 catgtattctg 39915475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 345 - 452
Target Start/End: Original strand, 3647889 - 3647995
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||  |||||||| |||||| ||||| |||||||||||    
T  3647889 tcattttgtcaacaaaagtacaatttaaaatagggttattaattgaaattgaccacataatatacatgaagtctg-aaaatttaccctgtaattaaataa 3647987  T
Q  445 tatgtatt 452  Q
     |||||||    
T  3647988 catgtatt 3647995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 345 - 452
Target Start/End: Original strand, 29727482 - 29727588
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| | |||||||| |||||||||  | |||||||||||    
T  29727482 tcattttgtcaacaaaagtacaatttaaaatagggttattaattgaaattgaccacgtaatatatgtgaagtctg-aaaattgacattgtaattaaataa 29727580  T
Q  445 tatgtatt 452  Q
     |||||||    
T  29727581 catgtatt 29727588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 345 - 452
Target Start/End: Original strand, 34135903 - 34136009
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    |||||||||||| ||||||||||||||||||| | ||||||||| ||||||||||||||||||| | |||||||| |||||||||||| |||||||||||    
T  34135903 tcattttgtcaataaaagtacaatttaaaataggattattaattaaaattgaccatgtaatatatgtgaagtctg-aaaattgaccctgtaattaaataa 34136001  T
Q  445 tatgtatt 452  Q
     |||||||    
T  34136002 catgtatt 34136009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 345 - 455
Target Start/End: Complemental strand, 36409553 - 36409444
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctat-aattaaata 443  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||| | | ||||||||     
T  36409553 tcattttgtcaacaaaagtacaatttaaaata-ggttattaattgaaattgaccatgtaatatacgtgaagtctg-aaaattgaccttgtaaattaaatc 36409456  T
Q  444 atatgtattctg 455  Q
    | ||||||||||    
T  36409455 acatgtattctg 36409444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 345 - 454
Target Start/End: Complemental strand, 7279095 - 7278987
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    |||||| ||||||||||||||||||||||||| | ||||||||||||||||| ||| ||||||||| |||||||| ||||||| |||| |||||||||||    
T  7279095 tcatttagtcaacaaaagtacaatttaaaataagattattaattgaaattgatcatataatatacgtgaagtctg-aaaattggccctgtaattaaataa 7278997  T
Q  445 tatgtattct 454  Q
     |||||||||    
T  7278996 catgtattct 7278987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 345 - 452
Target Start/End: Complemental strand, 4405077 - 4404971
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    |||||||||||| ||||||||||||||||||| | ||||||||| ||||| ||||||||||||| | |||||||| ||||||| |||| |||||||||||    
T  4405077 tcattttgtcaataaaagtacaatttaaaataagattattaattaaaattaaccatgtaatatatgtgaagtctg-aaaattggccctgtaattaaataa 4404979  T
Q  445 tatgtatt 452  Q
     |||||||    
T  4404978 catgtatt 4404971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 349 - 452
Target Start/End: Original strand, 16787127 - 16787229
Alignment:
Q  349 tttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataatatg 448  Q
    |||||||| ||||||||||||||||||| | ||||||||| ||||||||||||||||||| | ||||||| ||||||||  ||| ||||||||||| |||    
T  16787127 tttgtcaataaaagtacaatttaaaataggcttattaattaaaattgaccatgtaatatatgtgaagtct-aaaaattggtcctgtaattaaataacatg 16787225  T
Q  449 tatt 452  Q
    ||||    
T  16787226 tatt 16787229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 345 - 440
Target Start/End: Complemental strand, 15839346 - 15839252
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaa 440  Q
    ||||||||||||||||||| |||||||||||| | ||||||||| |||||||||| |||||||||   ||||||| |||||||||||| |||||||    
T  15839346 tcattttgtcaacaaaagtgcaatttaaaataggattattaattaaaattgaccacgtaatatacttaaagtctg-aaaattgaccctgtaattaa 15839252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 345 - 444
Target Start/End: Complemental strand, 23403137 - 23403039
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    |||||||||||| ||||||||||||||||||| | ||||||||| |||||||||||||| |||| | |||||||| |||||||  ||| |||||||||||    
T  23403137 tcattttgtcaataaaagtacaatttaaaataggattattaattaaaattgaccatgtattatatgtgaagtctg-aaaattggtcctgtaattaaataa 23403039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 383 - 455
Target Start/End: Complemental strand, 9878251 - 9878180
Alignment:
Q  383 ttaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataatatgtattctg 455  Q
    |||||||||||||||||||||||||||  |||||||| |||||||||||| ||||||||||| ||||||||||    
T  9878251 ttaattgaaattgaccatgtaatatacatgaagtctg-aaaattgaccctgtaattaaataacatgtattctg 9878180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 345 - 405
Target Start/End: Complemental strand, 42231975 - 42231915
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaat 405  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||    
T  42231975 tcattttgtcaacaaaagtacaatttaaaataggattattaattgaaattgaccctgtaat 42231915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 356 - 405
Target Start/End: Original strand, 2727959 - 2728008
Alignment:
Q  356 acaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaat 405  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  2727959 acaaaagtacaatttaaaatacggttattaattgaaattgaccctgtaat 2728008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 345 - 388
Target Start/End: Complemental strand, 29632456 - 29632413
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaatt 388  Q
    ||||||| |||||||||||||||||||||||| |||||||||||    
T  29632456 tcattttatcaacaaaagtacaatttaaaatagggttattaatt 29632413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 385
Target Start/End: Complemental strand, 27046881 - 27046841
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttatta 385  Q
    |||||||||||||| ||||||||||||||||| ||||||||    
T  27046881 tcattttgtcaacagaagtacaatttaaaatagggttatta 27046841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 425
Target Start/End: Complemental strand, 15317605 - 15317570
Alignment:
Q  390 aaattgaccatgtaatatacgcgaagtctgaaaaat 425  Q
    |||||||||||||||||||||| |||||||||||||    
T  15317605 aaattgaccatgtaatatacgcaaagtctgaaaaat 15317570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 425
Target Start/End: Complemental strand, 15497974 - 15497939
Alignment:
Q  390 aaattgaccatgtaatatacgcgaagtctgaaaaat 425  Q
    |||||||||||||||||||||| |||||||||||||    
T  15497974 aaattgaccatgtaatatacgcaaagtctgaaaaat 15497939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 425
Target Start/End: Original strand, 33947267 - 33947302
Alignment:
Q  390 aaattgaccatgtaatatacgcgaagtctgaaaaat 425  Q
    ||||||||||||||||||| ||||||||||||||||    
T  33947267 aaattgaccatgtaatataggcgaagtctgaaaaat 33947302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 339 - 455
Target Start/End: Original strand, 15209380 - 15209496
Alignment:
Q  339 ggttcctcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataatt 438  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  15209380 ggttcatcattttgtcaacaaaagtacaatttaaaatagggttattaattgaaattgaccatgtaatatacgtgaagtctgaaaaattgaccctgtaatt 15209479  T
Q  439 aaataatatgtattctg 455  Q
    |||||| ||||||||||    
T  15209480 aaataacatgtattctg 15209496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 339 - 455
Target Start/End: Original strand, 41971347 - 41971463
Alignment:
Q  339 ggttcctcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataatt 438  Q
    |||||||| ||||| ||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||| |||| |||||||||||||||| |||||    
T  41971347 ggttcctcgttttgacaacaaaagtacaatttaaaatagggttgttaattgaaattgaccatataatatacgtgaagcctgaaaaattgaccctgtaatt 41971446  T
Q  439 aaataatatgtattctg 455  Q
    |||||| ||||||||||    
T  41971447 aaataacatgtattctg 41971463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 339 - 454
Target Start/End: Complemental strand, 33490455 - 33490340
Alignment:
Q  339 ggttcctcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataatt 438  Q
    ||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||| || | |||||    
T  33490455 ggttcctcatttgttcaacaaaagtacaatttaaaatagggttattaattgaaattgaccatgtaatatacgtgaagtatgaaaaattgcccatgtaatt 33490356  T
Q  439 aaataatatgtattct 454  Q
    |||||| |||||||||    
T  33490355 aaataacatgtattct 33490340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 345 - 455
Target Start/End: Complemental strand, 23314063 - 23313954
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||| |||||||||| | |||||||||||    
T  23314063 tcattttgtcaacaaaagtacaatttaaaatagggttattaattgaaattgaccacgtaatatacgtgaagtctg-aaaattgaccatgtaattaaataa 23313965  T
Q  445 tatgtattctg 455  Q
     ||||||||||    
T  23313964 catgtattctg 23313954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 345 - 455
Target Start/End: Original strand, 11957456 - 11957565
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| | |||||||| |||||| |||||  ||||||||||    
T  11957456 tcattttgtcaacaaaagtacaatttaaaataggattattaattgaaattgaccatgtaatatatgtgaagtctg-aaaattaaccctgcaattaaataa 11957554  T
Q  445 tatgtattctg 455  Q
     ||||||||||    
T  11957555 catgtattctg 11957565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 345 - 455
Target Start/End: Complemental strand, 17446362 - 17446253
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    ||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||| |||||||| ||||||| || | |||||||||||    
T  17446362 tcattttgtcaacaaaagtgcaatttaaaataggattattaattgaaattgaccatgtaatatacgtgaagtctg-aaaattggccatgtaattaaataa 17446264  T
Q  445 tatgtattctg 455  Q
     ||||||||||    
T  17446263 catgtattctg 17446253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 345 - 455
Target Start/End: Original strand, 32981156 - 32981265
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||   ||||||||| || ||||| |||||||||| | |||||||||||    
T  32981156 tcattttgtcaacaaaagtacaatttaaaatagggttattaattgaaattgaccgcctaatatacgtgatgtctg-aaaattgaccatgtaattaaataa 32981254  T
Q  445 tatgtattctg 455  Q
     ||||||||||    
T  32981255 catgtattctg 32981265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 345 - 455
Target Start/End: Complemental strand, 7434491 - 7434380
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaata- 443  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||||| | |||||||||| |||||||| |||||||||| | ||||||||||     
T  7434491 tcattttgtcaacaaaagtgcaatttaaaatagggttattaattgaaattgacaacgtaatatacgtgaagtctg-aaaattgaccatgtaattaaataa 7434393  T
Q  444 -atatgtattctg 455  Q
     ||||||||||||    
T  7434392 catatgtattctg 7434380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 345 - 455
Target Start/End: Original strand, 42310036 - 42310148
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgacc---ctataattaaa 441  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||  |||||||| ||||||||||   || ||||||||    
T  42310036 tcattttgtaaacaaaagtacaatttaaaatatgattattaattgaaattgaccacgtaatatacatgaagtctg-aaaattgaccctgctgtaattaaa 42310134  T
Q  442 taatatgtattctg 455  Q
    ||| ||||||||||    
T  42310135 taacatgtattctg 42310148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 347 - 405
Target Start/End: Complemental strand, 3830019 - 3829961
Alignment:
Q  347 attttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaat 405  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  3830019 attttgtcaacaaaagtacaatttaaaatagggttattaattgaaattgaccctgtaat 3829961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 345 - 421
Target Start/End: Complemental strand, 35908625 - 35908549
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaa 421  Q
    |||||||||||| |||| |||||||||||||| | ||||||||| |||||||| |||||||||| | ||||||||||    
T  35908625 tcattttgtcaataaaaatacaatttaaaataggattattaattaaaattgacaatgtaatatatgtgaagtctgaa 35908549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 340 - 376
Target Start/End: Complemental strand, 17874994 - 17874958
Alignment:
Q  340 gttcctcattttgtcaacaaaagtacaatttaaaata 376  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  17874994 gttcgtcattttatcaacaaaagtacaatttaaaata 17874958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 4e-45; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 339 - 455
Target Start/End: Original strand, 31028046 - 31028162
Alignment:
Q  339 ggttcctcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataatt 438  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||| || |||||    
T  31028046 ggttccttattttgtcaacaaaagtacaatttaaaatatggctattaattgaaattgaccatgtaatatacgtgaagtctgaaaaatcgacgctgtaatt 31028145  T
Q  439 aaataatatgtattctg 455  Q
    |||||||||||||||||    
T  31028146 aaataatatgtattctg 31028162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 345 - 455
Target Start/End: Original strand, 34947924 - 34948033
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||| |||||||||| | |||||||||||    
T  34947924 tcattttgtcaacaaaagtacaatttaaaatagggttattaattgaaattgaccacgtaatatacgtgaagtctg-aaaattgaccatgtaattaaataa 34948022  T
Q  445 tatgtattctg 455  Q
     ||||||||||    
T  34948023 catgtattctg 34948033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 345 - 455
Target Start/End: Original strand, 33228449 - 33228559
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctat-aattaaata 443  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||| | | ||||||||     
T  33228449 tcattttgtcaacaaaagtacaatttaaaatagggttattaattgaaattgaccatgtaatatacgtgaagtctg-aaaattgaccttgtaaattaaatc 33228547  T
Q  444 atatgtattctg 455  Q
    | ||||||||||    
T  33228548 acatgtattctg 33228559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 345 - 455
Target Start/End: Complemental strand, 399687 - 399578
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    ||||||| |||||||||||||||||||||||| ||||||||||| ||||| |||| |||||||||| |||||||| |||||||||||| |||||||||||    
T  399687 tcattttatcaacaaaagtacaatttaaaatagggttattaatttaaattaaccacgtaatatacgtgaagtctg-aaaattgaccctgtaattaaataa 399589  T
Q  445 tatgtattctg 455  Q
     ||||||||||    
T  399588 catgtattctg 399578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 345 - 454
Target Start/End: Complemental strand, 13838868 - 13838760
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    ||||||| ||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||| |||||||| |||||||||| | |||||||||||    
T  13838868 tcattttatcaacaaaaatacaatttaaaatagggttattaattgaaattgaccacgtaatatacgtgaagtctg-aaaattgaccatgtaattaaataa 13838770  T
Q  445 tatgtattct 454  Q
     |||||||||    
T  13838769 catgtattct 13838760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 345 - 455
Target Start/End: Complemental strand, 29744339 - 29744229
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctat-aattaaata 443  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||| |||||||||| | | ||||||||     
T  29744339 tcattttgtcaacaaaagtacaatttaaaatagggttattaattgagattgaccatgtaatatacgtgaagtctg-aaaattgaccttgtaaattaaatc 29744241  T
Q  444 atatgtattctg 455  Q
    | ||||||||||    
T  29744240 acatgtattctg 29744229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 345 - 452
Target Start/End: Complemental strand, 28997798 - 28997692
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    |||||||||||| |||| || ||||||||||| | ||||||||| ||||||||||||||||||| | |||||||| ||||||| |||| |||||||||||    
T  28997798 tcattttgtcaataaaactataatttaaaataggattattaattaaaattgaccatgtaatatatgtgaagtctg-aaaattggccctgtaattaaataa 28997700  T
Q  445 tatgtatt 452  Q
     |||||||    
T  28997699 catgtatt 28997692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 358 - 423
Target Start/End: Complemental strand, 34253186 - 34253121
Alignment:
Q  358 aaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaa 423  Q
    ||||||||||||||||||| ||||||||||||||||| | || |||||||||| ||||||||||||    
T  34253186 aaaagtacaatttaaaatagggttattaattgaaattaatcacgtaatatacgtgaagtctgaaaa 34253121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 425
Target Start/End: Complemental strand, 10232331 - 10232292
Alignment:
Q  386 attgaaattgaccatgtaatatacgcgaagtctgaaaaat 425  Q
    ||||||||||||||||| ||||| ||||||||||||||||    
T  10232331 attgaaattgaccatgttatatatgcgaagtctgaaaaat 10232292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 43)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 347 - 447
Target Start/End: Complemental strand, 30111028 - 30110928
Alignment:
Q  347 attttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataata 446  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  30111028 attttgtcaacaaaagtacaatttaaaatatggttattgattgaaattgaccatgtaatatacgtgaagtctgaaaaattgaccctgtaattaaataata 30110929  T
Q  447 t 447  Q
    |    
T  30110928 t 30110928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 345 - 455
Target Start/End: Original strand, 17510337 - 17510446
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||| |||||||||| | |||||||||||    
T  17510337 tcattttgtcaacaaaagtacaatttaaaataaggttattaattgaaattgaccacgtaatatacgtgaagtctg-aaaattgaccttgtaattaaataa 17510435  T
Q  445 tatgtattctg 455  Q
    |||||||||||    
T  17510436 tatgtattctg 17510446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 345 - 452
Target Start/End: Complemental strand, 40530154 - 40530048
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||| |||||||| |||||||||||| |||||||||||    
T  40530154 tcattttgtcaacaaaagtgcaatttaaaatagggttattaattgaaattgaccacgtaatatacgtgaagtctg-aaaattgaccctgtaattaaataa 40530056  T
Q  445 tatgtatt 452  Q
     |||||||    
T  40530055 catgtatt 40530048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 35 - 117
Target Start/End: Complemental strand, 30111304 - 30111222
Alignment:
Q  35 ttgaaagaataccatcgttgagcatagtacattagataatgagacaaaataagatacaaagagtcgttggataaatcgtaaga 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  30111304 ttgaaagaataccatcgttgagcatagtacattagataatgagacaaaataagatacaaagaatcattggataaatcgtaaga 30111222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 345 - 455
Target Start/End: Complemental strand, 44157693 - 44157584
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||| || |||||||| |||||||||||| |||||||||||    
T  44157693 tcattttgtcaacaaaagtacaatttaaaataggattattaattgaaattgatcatgtaatatgcgtgaagtctg-aaaattgaccctgtaattaaataa 44157595  T
Q  445 tatgtattctg 455  Q
     ||||||||||    
T  44157594 catgtattctg 44157584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 345 - 444
Target Start/End: Original strand, 28876412 - 28876510
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||| |||||||||| | |||||||||||    
T  28876412 tcattttgtcaacaaaagtacaatttaaaataggattattaattgaaattgaccatgtaatatacgtgaagtctg-aaaattgaccttgtaattaaataa 28876510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 345 - 444
Target Start/End: Original strand, 50204185 - 50204283
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||| ||||||| |||| |||||||||||    
T  50204185 tcattttgtcaacaaaagtacaatttaaaataggattattaattgaaattgaccatgtaatatacgtgaagtctg-aaaattggccctgtaattaaataa 50204283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 345 - 455
Target Start/End: Complemental strand, 13013258 - 13013149
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    ||||||| |||||||||||||||||||||||| ||||||||||| ||||| |||| |||||||||| |||||||| |||||||||||| |||||||||||    
T  13013258 tcattttatcaacaaaagtacaatttaaaatagggttattaatttaaattaaccacgtaatatacgtgaagtctg-aaaattgaccctgtaattaaataa 13013160  T
Q  445 tatgtattctg 455  Q
     ||||||||||    
T  13013159 catgtattctg 13013149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 345 - 455
Target Start/End: Original strand, 13390545 - 13390654
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    ||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||| || ||||||| |||| |||||||||||    
T  13390545 tcattttatcaacaaaagtacaatttaaaataggattattaattgaaattgaccatgtaatatacgtgaagtttg-aaaattggccctgtaattaaataa 13390643  T
Q  445 tatgtattctg 455  Q
     ||||||||||    
T  13390644 catgtattctg 13390654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 345 - 455
Target Start/End: Complemental strand, 25931823 - 25931714
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    ||||||||| ||||||||| |||||||||||| |||||||||||||||||||||| |||||||||  |||||||| |||||||||||| |||||||||||    
T  25931823 tcattttgttaacaaaagtgcaatttaaaatagggttattaattgaaattgaccacgtaatatacatgaagtctg-aaaattgaccctgtaattaaataa 25931725  T
Q  445 tatgtattctg 455  Q
     ||||||||||    
T  25931724 catgtattctg 25931714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 345 - 455
Target Start/End: Original strand, 34406381 - 34406490
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    ||||||| |||||||||| ||||||||||||| ||||||||||| ||||| |||| |||||||||| |||||||| |||||||||||| |||||||||||    
T  34406381 tcattttatcaacaaaaggacaatttaaaatagggttattaatttaaattaaccacgtaatatacgtgaagtctg-aaaattgaccctgtaattaaataa 34406479  T
Q  445 tatgtattctg 455  Q
    |||||||||||    
T  34406480 tatgtattctg 34406490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 345 - 455
Target Start/End: Complemental strand, 43356974 - 43356865
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    ||||||| |||||||||| ||||||||||||| ||||||||||| ||||| |||| |||||||||| |||||||| |||||||||||| |||||||||||    
T  43356974 tcattttatcaacaaaaggacaatttaaaatagggttattaatttaaattaaccacgtaatatacgtgaagtctg-aaaattgaccctgtaattaaataa 43356876  T
Q  445 tatgtattctg 455  Q
    |||||||||||    
T  43356875 tatgtattctg 43356865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 345 - 455
Target Start/End: Complemental strand, 47501843 - 47501734
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    ||||||| |||||||||||||||||||||||| ||||||||||| ||||| |||| |||||||||| |||||||| |||||||||||| |||||||||||    
T  47501843 tcattttatcaacaaaagtacaatttaaaatagggttattaatttaaattaaccacgtaatatacgtgaagtctg-aaaattgaccctgtaattaaataa 47501745  T
Q  445 tatgtattctg 455  Q
     ||||||||||    
T  47501744 catgtattctg 47501734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 345 - 453
Target Start/End: Original strand, 13398658 - 13398765
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    |||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||| |||||||| ||||||| | || |||||||||||    
T  13398658 tcattttgtcaacaaaagtacaatttaaaataggattatcaattgaaattgaccatgtaatatacgtgaagtctg-aaaattggctctgtaattaaataa 13398756  T
Q  445 tatgtattc 453  Q
     ||||||||    
T  13398757 catgtattc 13398765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 345 - 455
Target Start/End: Original strand, 30076749 - 30076859
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctat-aattaaata 443  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||| |||||||||| | | ||||||||     
T  30076749 tcattttgtcaacaaaagtacaatttaaaataggattattaattgaaattgaccatgtaatatacgtgaagtctg-aaaattgaccttgtaaattaaatc 30076847  T
Q  444 atatgtattctg 455  Q
    | ||||||||||    
T  30076848 acatgtattctg 30076859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 345 - 423
Target Start/End: Complemental strand, 1818724 - 1818647
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaa 423  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  1818724 tcattttgtcaacaaaagtacaatttaaaata-ggttattaattgaaattgaccatgtaatatacgtgaagtctgaaaa 1818647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 345 - 423
Target Start/End: Original strand, 10351994 - 10352072
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaa 423  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||    
T  10351994 tcattttgtcaacaaaagtacaatttaaaatagggttattaattgaaattgaccatgtaatatacatgaagtctgaaaa 10352072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 345 - 455
Target Start/End: Original strand, 26438376 - 26438485
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    ||||||| |||||||||| ||||||||||||| ||||||||||| ||||| |||| |||||||||| |||||||| |||||||||||| |||||||||||    
T  26438376 tcattttatcaacaaaaggacaatttaaaatagggttattaatttaaattaaccacgtaatatacgtgaagtctg-aaaattgaccctgtaattaaataa 26438474  T
Q  445 tatgtattctg 455  Q
     ||||||||||    
T  26438475 catgtattctg 26438485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 345 - 452
Target Start/End: Original strand, 33135542 - 33135648
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| | |||||||| |||||||  | | |||||||||||    
T  33135542 tcattttgtcaacaaaagtacaatttaaaataggattattaattgaaattgaccatgtaatatatgtgaagtctg-aaaattggtcatgtaattaaataa 33135640  T
Q  445 tatgtatt 452  Q
     |||||||    
T  33135641 catgtatt 33135648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 339 - 430
Target Start/End: Complemental strand, 48131086 - 48130996
Alignment:
Q  339 ggttcctcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgacc 430  Q
    |||||||| ||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  48131086 ggttcctccttttgtcaacaaaagtacattttaaa-tagggttattaattgaaattgaccatgtaatatacgttaagtctgaaaaattgacc 48130996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 345 - 455
Target Start/End: Original strand, 36381447 - 36381555
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    ||||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |||||||||| |||||||| |||||||| | | |||||||||||    
T  36381447 tcattttgtcaacaaaagtgcaatttaaaatagggttattaattaaaattgaccacgtaatatacgtgaagtctg-aaaattga-cttgtaattaaataa 36381544  T
Q  445 tatgtattctg 455  Q
     ||||||||||    
T  36381545 catgtattctg 36381555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 345 - 452
Target Start/End: Original strand, 3291995 - 3292101
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    |||||||||||| |||| |||||||||||||| | ||||||||| ||||||||||||||||||| | |||||||| ||||||| |||| |||||||||||    
T  3291995 tcattttgtcaataaaactacaatttaaaataggattattaattaaaattgaccatgtaatatatgtgaagtctg-aaaattggccctgtaattaaataa 3292093  T
Q  445 tatgtatt 452  Q
     |||||||    
T  3292094 catgtatt 3292101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 349 - 452
Target Start/End: Original strand, 42332875 - 42332977
Alignment:
Q  349 tttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataatatg 448  Q
    |||||||| ||||||||||||||||||| | ||||||||| ||||||||||||||||||| | |||||||| ||||||| |||| ||||||||||| |||    
T  42332875 tttgtcaataaaagtacaatttaaaataggattattaattaaaattgaccatgtaatatatgtgaagtctg-aaaattggccctgtaattaaataacatg 42332973  T
Q  449 tatt 452  Q
    ||||    
T  42332974 tatt 42332977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 349 - 452
Target Start/End: Original strand, 43142687 - 43142789
Alignment:
Q  349 tttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataatatg 448  Q
    |||||||| ||||||||||||||||||| | ||||||||| ||||||||||||||||||| | |||||||| ||||||| |||| ||||||||||| |||    
T  43142687 tttgtcaataaaagtacaatttaaaataggattattaattaaaattgaccatgtaatatatgtgaagtctg-aaaattggccctgtaattaaataacatg 43142785  T
Q  449 tatt 452  Q
    ||||    
T  43142786 tatt 43142789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 345 - 423
Target Start/End: Original strand, 29319451 - 29319529
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaa 423  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||  ||||||||||||    
T  29319451 tcattttgtcaacaaaagtacaatttaaaatagggttattaattgaaattgacaacgtaatatacctgaagtctgaaaa 29319529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 345 - 454
Target Start/End: Complemental strand, 37577819 - 37577711
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    ||||||||||||||||| ||||||||||| || | ||||||||||||||||| ||||||||||||  |||||||| |||||| ||| | |||||||||||    
T  37577819 tcattttgtcaacaaaaatacaatttaaattaggattattaattgaaattgatcatgtaatatacatgaagtctg-aaaattaaccttgtaattaaataa 37577721  T
Q  445 tatgtattct 454  Q
     |||||||||    
T  37577720 catgtattct 37577711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 345 - 452
Target Start/End: Original strand, 6689335 - 6689441
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    |||||||||||| |||| |||||||||||||| | ||||||||| ||||||||||||||||||| |  ||||||| ||||||| |||| |||||||||||    
T  6689335 tcattttgtcaataaaactacaatttaaaataggattattaattaaaattgaccatgtaatatatgtaaagtctg-aaaattggccctgtaattaaataa 6689433  T
Q  445 tatgtatt 452  Q
     |||||||    
T  6689434 catgtatt 6689441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 345 - 452
Target Start/End: Original strand, 30215844 - 30215950
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    |||||||||||| ||||||||||||| ||||| | ||||||||| ||||||||||||||||||| | |||||||| ||||||| || | |||||||||||    
T  30215844 tcattttgtcaataaaagtacaatttcaaataggattattaattaaaattgaccatgtaatatatgtgaagtctg-aaaattggccttgtaattaaataa 30215942  T
Q  445 tatgtatt 452  Q
     |||||||    
T  30215943 catgtatt 30215950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 345 - 452
Target Start/End: Complemental strand, 35547020 - 35546914
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    |||||||||||| |||| |||||||||||||| | ||||||||| ||||||||||||||||||| | |||||||| ||||||| || | |||||||||||    
T  35547020 tcattttgtcaataaaactacaatttaaaataggattattaattaaaattgaccatgtaatatatgtgaagtctg-aaaattggccatgtaattaaataa 35546922  T
Q  445 tatgtatt 452  Q
     |||||||    
T  35546921 catgtatt 35546914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 345 - 442
Target Start/End: Complemental strand, 20130298 - 20130202
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaat 442  Q
    ||||||| |||||||||||||||||||||||| ||||||||||| ||||| || | |||||||||| |||||||| |||||||||||| || ||||||    
T  20130298 tcattttatcaacaaaagtacaatttaaaatagggttattaatttaaattaactacgtaatatacgtgaagtctg-aaaattgaccctgtagttaaat 20130202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 390 - 455
Target Start/End: Complemental strand, 48131004 - 48130939
Alignment:
Q  390 aaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataatatgtattctg 455  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||    
T  48131004 aaattgaccatgtaatatacgcgaagtctgaaaaattgaccatgtaattaaataacatgtattctg 48130939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 366 - 423
Target Start/End: Original strand, 29995121 - 29995178
Alignment:
Q  366 aatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaa 423  Q
    ||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||    
T  29995121 aatttaaaataggattattaattgaaattgaccatgtaatatacgtgaagtctgaaaa 29995178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 345 - 405
Target Start/End: Complemental strand, 26449762 - 26449702
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaat 405  Q
    |||||||||||||||||||||||| ||||||| | ||||||||||||||||||| ||||||    
T  26449762 tcattttgtcaacaaaagtacaatgtaaaataggattattaattgaaattgaccctgtaat 26449702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 345 - 405
Target Start/End: Complemental strand, 48990340 - 48990280
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaat 405  Q
    |||||||||||| |||||||||||||||||||  |||||||||||||||||||| ||||||    
T  48990340 tcattttgtcaataaaagtacaatttaaaatagagttattaattgaaattgaccctgtaat 48990280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 345 - 408
Target Start/End: Complemental strand, 7769625 - 7769562
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatata 408  Q
    |||||||||||| |||||||||||||||||||   ||||||||| |||||||||||||||||||    
T  7769625 tcattttgtcaataaaagtacaatttaaaatagaattattaattaaaattgaccatgtaatata 7769562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 30111169 - 30111115
Alignment:
Q  170 acgaaagtccgtaatccagagggcggtgaagggcacttgagagaataaggggcat 224  Q
    ||||||| | ||||||||||||| |||||||||||||||||||||||||||||||    
T  30111169 acgaaagactgtaatccagagggtggtgaagggcacttgagagaataaggggcat 30111115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 371 - 425
Target Start/End: Original strand, 29132134 - 29132188
Alignment:
Q  371 aaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaat 425  Q
    |||||| ||||| | ||||||||||| ||||||||||||||||||||||||||||    
T  29132134 aaaatagggttaattattgaaattgatcatgtaatatacgcgaagtctgaaaaat 29132188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 390 - 425
Target Start/End: Original strand, 9070477 - 9070512
Alignment:
Q  390 aaattgaccatgtaatatacgcgaagtctgaaaaat 425  Q
    ||||||||||||||||||||||||||||||||||||    
T  9070477 aaattgaccatgtaatatacgcgaagtctgaaaaat 9070512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 391
Target Start/End: Complemental strand, 6236528 - 6236482
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaa 391  Q
    ||||||| ||||||||| |||||||||||||| ||||||||||||||    
T  6236528 tcattttatcaacaaaaatacaatttaaaatacggttattaattgaa 6236482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 425
Target Start/End: Complemental strand, 9415926 - 9415887
Alignment:
Q  386 attgaaattgaccatgtaatatacgcgaagtctgaaaaat 425  Q
    ||||||||||||| ||||||||| ||||||||||||||||    
T  9415926 attgaaattgaccctgtaatatatgcgaagtctgaaaaat 9415887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 425
Target Start/End: Original strand, 20628664 - 20628702
Alignment:
Q  387 ttgaaattgaccatgtaatatacgcgaagtctgaaaaat 425  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  20628664 ttgaaattgaccctgtaatatacgggaagtctgaaaaat 20628702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 376
Target Start/End: Original strand, 8897884 - 8897921
Alignment:
Q  339 ggttcctcattttgtcaacaaaagtacaatttaaaata 376  Q
    ||||| |||||||||||||||||||||||||| |||||    
T  8897884 ggttcgtcattttgtcaacaaaagtacaatttgaaata 8897921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 376
Target Start/End: Original strand, 25182837 - 25182874
Alignment:
Q  339 ggttcctcattttgtcaacaaaagtacaatttaaaata 376  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  25182837 ggttcgtcattttgtcaacaaaagcacaatttaaaata 25182874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 2e-41; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 345 - 455
Target Start/End: Complemental strand, 7003695 - 7003586
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  7003695 tcattttgtcaacaaaagtacaatttaaaatatgattattaattgaaattgaccatgtaatatacgtgaagtctg-aaaattgaccctataattaaataa 7003597  T
Q  445 tatgtattctg 455  Q
     || |||||||    
T  7003596 catatattctg 7003586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 345 - 455
Target Start/End: Complemental strand, 7049566 - 7049457
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  7049566 tcattttgtcaacaaaagtacaatttaaaatatgattattaattgaaattgaccatgtaatatacgtgaagtctg-aaaattgaccctataattaaataa 7049468  T
Q  445 tatgtattctg 455  Q
     || |||||||    
T  7049467 catatattctg 7049457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 345 - 455
Target Start/End: Complemental strand, 5556531 - 5556422
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||| |||||||||||| |||||||||||    
T  5556531 tcattttgtcaacaaaagtacaatttaaaatagggttattaattgaaattgaccacgtaatatacgtgaagtctg-aaaattgaccctgtaattaaataa 5556433  T
Q  445 tatgtattctg 455  Q
     ||||||||||    
T  5556432 catgtattctg 5556422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 345 - 455
Target Start/End: Complemental strand, 36631885 - 36631776
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||| |||||||| |||||||||||| |||||||||||    
T  36631885 tcattttgtcaacaaaagtgcaatttaaaatagggttattaattgaaattgaccacgtaatatacgtgaagtctg-aaaattgaccctgtaattaaataa 36631787  T
Q  445 tatgtattctg 455  Q
     ||||||||||    
T  36631786 catgtattctg 36631776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 345 - 455
Target Start/End: Original strand, 34468432 - 34468541
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||| |||||||| |||||||||| | |||||||||||    
T  34468432 tcattttgtcaacaaaagtacaatttaaaatagggttattaattgaaattgatcacgtaatatacgtgaagtctg-aaaattgaccttgtaattaaataa 34468530  T
Q  445 tatgtattctg 455  Q
     ||||||||||    
T  34468531 catgtattctg 34468541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 345 - 452
Target Start/End: Original strand, 3113220 - 3113326
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||| |||||||| |||||||||||| |||| ||||||    
T  3113220 tcattttgtcaacaaaagtacaatttaaaatagggttattaattgaaattgacaacgtaatatacgtgaagtctg-aaaattgaccctgtaatcaaataa 3113318  T
Q  445 tatgtatt 452  Q
     |||||||    
T  3113319 catgtatt 3113326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 345 - 455
Target Start/End: Complemental strand, 8395193 - 8395084
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    ||||||||||||||||||| |||||||||||| | |||||||||||||||||||| | |||||||| |||||||| |||||||||| | |||||||||||    
T  8395193 tcattttgtcaacaaaagtgcaatttaaaataggtttattaattgaaattgaccacgcaatatacgtgaagtctg-aaaattgaccatgtaattaaataa 8395095  T
Q  445 tatgtattctg 455  Q
     ||||||||||    
T  8395094 catgtattctg 8395084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 345 - 455
Target Start/End: Original strand, 14775693 - 14775802
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||| | || |||||||||| |||||||| |||||||| ||| |||||||||||    
T  14775693 tcattttatcaacaaaagtacaatttaaaatagggttattaattgaaattaatcacgtaatatacgtgaagtctg-aaaattgatcctgtaattaaataa 14775791  T
Q  445 tatgtattctg 455  Q
     ||| ||||||    
T  14775792 catgcattctg 14775802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 345 - 455
Target Start/End: Original strand, 15226146 - 15226255
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||| | || |||||||||| |||||||| |||||||| ||| |||||||||||    
T  15226146 tcattttatcaacaaaagtacaatttaaaatagggttattaattgaaattaatcacgtaatatacgtgaagtctg-aaaattgatcctgtaattaaataa 15226244  T
Q  445 tatgtattctg 455  Q
     ||| ||||||    
T  15226245 catgcattctg 15226255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 345 - 452
Target Start/End: Complemental strand, 26625813 - 26625707
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    |||||||||||| ||||||||||||| ||||| | ||||||||| ||||||||||||||||||| | |||||||| ||||||| |||| |||||||||||    
T  26625813 tcattttgtcaataaaagtacaatttcaaataggattattaattaaaattgaccatgtaatatatgtgaagtctg-aaaattggccctgtaattaaataa 26625715  T
Q  445 tatgtatt 452  Q
     |||||||    
T  26625714 catgtatt 26625707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 345 - 452
Target Start/End: Original strand, 38637480 - 38637586
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    |||||||||||| ||||||||||||||||||| | ||||||| | ||||||||||||||||||| | |||||||| ||||||| |||| |||||||||||    
T  38637480 tcattttgtcaataaaagtacaatttaaaataggattattaaataaaattgaccatgtaatatatgtgaagtctg-aaaattggccctgtaattaaataa 38637578  T
Q  445 tatgtatt 452  Q
     |||||||    
T  38637579 catgtatt 38637586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 345 - 452
Target Start/End: Original strand, 8866829 - 8866935
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    |||||||||||| ||||||||||||||||||| | ||||||||| |||||||||| |||||||| | |||||||| ||||||| | || |||||||||||    
T  8866829 tcattttgtcaataaaagtacaatttaaaataagattattaattaaaattgaccacgtaatatatgtgaagtctg-aaaattggctctgtaattaaataa 8866927  T
Q  445 tatgtatt 452  Q
     |||||||    
T  8866928 catgtatt 8866935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 345 - 452
Target Start/End: Original strand, 37001337 - 37001443
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    |||||||||||| ||||||||||||||||||| | ||||||||| |||||||| || ||||||| | |||||||| ||||||| |||| |||||||||||    
T  37001337 tcattttgtcaataaaagtacaatttaaaataggattattaattaaaattgacaatataatatatgtgaagtctg-aaaattggccctgtaattaaataa 37001435  T
Q  445 tatgtatt 452  Q
     |||||||    
T  37001436 catgtatt 37001443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 345 - 452
Target Start/End: Original strand, 43183567 - 43183673
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    |||||||||||| |||| |||||||||||||| | ||||||||| ||||||||||||||||||| | |||||||| ||||||| || | |||||||||||    
T  43183567 tcattttgtcaataaaactacaatttaaaataggattattaattaaaattgaccatgtaatatatgtgaagtctg-aaaattggccatgtaattaaataa 43183665  T
Q  445 tatgtatt 452  Q
     |||||||    
T  43183666 catgtatt 43183673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 345 - 393
Target Start/End: Complemental strand, 33686601 - 33686553
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaat 393  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33686601 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaat 33686553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 352 - 400
Target Start/End: Original strand, 11019694 - 11019742
Alignment:
Q  352 gtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccat 400  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11019694 gtcaacaaaagtacaatttaaaatagggttattaattgaaattgaccat 11019742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 345 - 455
Target Start/End: Complemental strand, 36659229 - 36659128
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    |||||||||||| ||||||||||||||||||| | ||||||        ||||||||||||||||| ||||||| | || ||| |||| |||||||||||    
T  36659229 tcattttgtcaataaaagtacaatttaaaataggattatta--------tgaccatgtaatatacgtgaagtctcacaa-ttggccctgtaattaaataa 36659139  T
Q  445 tatgtattctg 455  Q
     ||||||||||    
T  36659138 catgtattctg 36659128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 425
Target Start/End: Original strand, 13072049 - 13072088
Alignment:
Q  386 attgaaattgaccatgtaatatacgcgaagtctgaaaaat 425  Q
    ||||||||||||| ||||||||| ||||||||||||||||    
T  13072049 attgaaattgaccctgtaatatatgcgaagtctgaaaaat 13072088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 425
Target Start/End: Complemental strand, 32073626 - 32073587
Alignment:
Q  386 attgaaattgaccatgtaatatacgcgaagtctgaaaaat 425  Q
    ||||||||||||| ||||||||| ||||||||||||||||    
T  32073626 attgaaattgaccttgtaatatatgcgaagtctgaaaaat 32073587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 425
Target Start/End: Original strand, 21420062 - 21420100
Alignment:
Q  387 ttgaaattgaccatgtaatatacgcgaagtctgaaaaat 425  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  21420062 ttgaaattgaccttgtaatatacgtgaagtctgaaaaat 21420100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 339 - 455
Target Start/End: Original strand, 7071621 - 7071736
Alignment:
Q  339 ggttcctcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataatt 438  Q
    |||||||||||||||||||| |||||||||||||||||   ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  7071621 ggttcctcattttgtcaacagaagtacaatttaaaataaatttattaattgaaattgaccat-taatatacgtgaagtctgaaaaattgaccctataatt 7071719  T
Q  439 aaataatatgtattctg 455  Q
    |||||| ||||||||||    
T  7071720 aaataacatgtattctg 7071736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 339 - 455
Target Start/End: Complemental strand, 26238690 - 26238574
Alignment:
Q  339 ggttcctcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataatt 438  Q
    |||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||| |||||| |||||||    
T  26238690 ggttcctcatttcgtcaagaaaagtacaatttaaaatagggttattaattgaaattgaccatgtaatatacacgaagtttgaaaatttgaccatataatt 26238591  T
Q  439 aaataatatgtattctg 455  Q
    |||||| ||||||||||    
T  26238590 aaataacatgtattctg 26238574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 345 - 455
Target Start/End: Original strand, 17444133 - 17444242
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||| |||||||||||| |||||||||||    
T  17444133 tcattttatcaacaaaagtacaatttaaaatagggttattaattgaaattgaccacgtaatatacgtgaagtctg-aaaattgaccctgtaattaaataa 17444231  T
Q  445 tatgtattctg 455  Q
     ||||||||||    
T  17444232 catgtattctg 17444242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 345 - 455
Target Start/End: Complemental strand, 18982613 - 18982504
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||| |||||| ||||| |||||||||||    
T  18982613 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaatttaccacgtaatatacgtgaagtctg-aaaatttaccctgtaattaaataa 18982515  T
Q  445 tatgtattctg 455  Q
     ||||||||||    
T  18982514 catgtattctg 18982504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 345 - 452
Target Start/End: Complemental strand, 42443054 - 42442948
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||| |||| | |||||||||||    
T  42443054 tcattttgtcaacaaaagtacaatttaaaatagggttattaattgaaattgaccatgtaatatacgtgaagtctg-aaaatggaccatgtaattaaataa 42442956  T
Q  445 tatgtatt 452  Q
     |||||||    
T  42442955 catgtatt 42442948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 345 - 455
Target Start/End: Complemental strand, 16406198 - 16406089
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||| ||| | |||||||||||    
T  16406198 tcattttgttaacaaaagtacaatttaaaatagggttattaattgaaattgaccatgtaatatacgtgaagtctg-aaaattcaccatgtaattaaataa 16406100  T
Q  445 tatgtattctg 455  Q
     ||||||||||    
T  16406099 catgtattctg 16406089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 345 - 454
Target Start/End: Complemental strand, 35963759 - 35963651
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||| | |||||||||| |||||||| |||||||||||| |||||||||||    
T  35963759 tcattttgtcaacaaaagtacaacttaaaatagggttattaattgaaattgacaacgtaatatacgtgaagtctg-aaaattgaccctgtaattaaataa 35963661  T
Q  445 tatgtattct 454  Q
     |||||||||    
T  35963660 catgtattct 35963651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 345 - 455
Target Start/End: Complemental strand, 771803 - 771694
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| | |||||| | |||||||||| | |||||||||||    
T  771803 tcattttgtcaacaaaaatacaatttaaaatagggttattaattgaaattgaccatgtaatataagtgaagtc-ggaaaattgaccatgtaattaaataa 771705  T
Q  445 tatgtattctg 455  Q
     ||||||||||    
T  771704 catgtattctg 771694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 345 - 455
Target Start/End: Original strand, 6402901 - 6403010
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    ||||||| |||||||||||||||||||||||| ||||||||||| ||||| |||| |||||||||| |||||||| |||||||||||| |||||||||||    
T  6402901 tcattttatcaacaaaagtacaatttaaaatagggttattaatttaaattaaccacgtaatatacgtgaagtctg-aaaattgaccctgtaattaaataa 6402999  T
Q  445 tatgtattctg 455  Q
     ||||||||||    
T  6403000 catgtattctg 6403010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 345 - 455
Target Start/End: Original strand, 32126286 - 32126395
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||||| || |||||||||| |||||||| |||||||||||  |||||||||||    
T  32126286 tcattttgtcaacaaaagtacagtttaaaatagggttattaattgaaattgatcacgtaatatacgtgaagtctg-aaaattgaccccgtaattaaataa 32126384  T
Q  445 tatgtattctg 455  Q
     ||||||||||    
T  32126385 catgtattctg 32126395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 345 - 454
Target Start/End: Original strand, 31580834 - 31580942
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    |||||| |||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||| |||||||| ||||||| |||| |||||||||||    
T  31580834 tcatttcgtcaacaaaaatacaatttaaaatagggttattaattgaaattgaccacgtaatatacgtgaagtctg-aaaattgtccctgtaattaaataa 31580932  T
Q  445 tatgtattct 454  Q
     |||||||||    
T  31580933 catgtattct 31580942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 345 - 455
Target Start/End: Original strand, 41250730 - 41250839
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    ||||||| ||||||||||| |||||||||||| ||||||||||||||||| |||| |||||||||| |||||||| |||||||||| | |||||||||||    
T  41250730 tcattttatcaacaaaagtgcaatttaaaatagggttattaattgaaattaaccacgtaatatacgtgaagtctg-aaaattgaccatgtaattaaataa 41250828  T
Q  445 tatgtattctg 455  Q
     ||||||||||    
T  41250829 catgtattctg 41250839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 339 - 407
Target Start/End: Original strand, 4554395 - 4554463
Alignment:
Q  339 ggttcctcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatat 407  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  4554395 ggtttctcattttgtcaacaaaaatacaatttaaaatatggttattaattgaaattgaccatgtaatat 4554463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 345 - 452
Target Start/End: Original strand, 8058441 - 8058547
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    ||||||||||||||| |||||||||||||||| | ||||||||||||||||| ||||||||||| | |||||||| |||||||  | | |||||||||||    
T  8058441 tcattttgtcaacaatagtacaatttaaaataggattattaattgaaattgatcatgtaatatatgtgaagtctg-aaaattggtcttgtaattaaataa 8058539  T
Q  445 tatgtatt 452  Q
     |||||||    
T  8058540 catgtatt 8058547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 345 - 452
Target Start/End: Complemental strand, 45419651 - 45419545
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    |||||||||||| |||| |||||||||||||| | ||||||||| ||||||||||||||||||| | ||||||| |||||||| || | |||||||||||    
T  45419651 tcattttgtcaataaaactacaatttaaaataggattattaattaaaattgaccatgtaatatatgtgaagtct-aaaaattggccatgtaattaaataa 45419553  T
Q  445 tatgtatt 452  Q
     |||||||    
T  45419552 catgtatt 45419545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 345 - 455
Target Start/End: Complemental strand, 2286969 - 2286867
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||       | ||||| || |||||||||||| |||||||||||    
T  2286969 tcattttgtcaacaaaagtgcaatttaaaatagggttattaattgaaattgaccacgt-------gtgaagtatg-aaaattgaccctgtaattaaataa 2286878  T
Q  445 tatgtattctg 455  Q
     ||||||||||    
T  2286877 catgtattctg 2286867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 345 - 405
Target Start/End: Original strand, 26161831 - 26161891
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaat 405  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||| ||| ||||||    
T  26161831 tcattttgtcaataaaagtacaatttaaaatagggttattaattgaaattcaccctgtaat 26161891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 376
Target Start/End: Original strand, 26656305 - 26656336
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaata 376  Q
    ||||||||||||||||||||||||||||||||    
T  26656305 tcattttgtcaacaaaagtacaatttaaaata 26656336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 376
Target Start/End: Original strand, 33453146 - 33453183
Alignment:
Q  339 ggttcctcattttgtcaacaaaagtacaatttaaaata 376  Q
    ||||| |||||||||||||||||||||||||| |||||    
T  33453146 ggttcgtcattttgtcaacaaaagtacaatttgaaata 33453183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 344 - 408
Target Start/End: Complemental strand, 45122206 - 45122142
Alignment:
Q  344 ctcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatata 408  Q
    |||||||| ||||||||||||||  |||||||| ||||| | ||| ||||||||| ||| |||||    
T  45122206 ctcattttatcaacaaaagtacatattaaaatagggttaattattaaaattgaccttgttatata 45122142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 2e-38; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 339 - 452
Target Start/End: Complemental strand, 28801950 - 28801837
Alignment:
Q  339 ggttcctcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataatt 438  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| || |||||||||| ||||||||||||||||||| | |||||    
T  28801950 ggttcctcattttgtcaacaaaagtacaatttaaaatagggtttttaattgaaattgatcacgtaatatacgtgaagtctgaaaaattgaccttgtaatt 28801851  T
Q  439 aaataatatgtatt 452  Q
    |||||| |||||||    
T  28801850 aaataacatgtatt 28801837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 345 - 455
Target Start/End: Complemental strand, 16155960 - 16155851
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||| |||||||| |||||||||||| |||||||||||    
T  16155960 tcattttgtcaacaaaagtacaatttaaaatagggttattaattgaaattgaccacataatatacgtgaagtctg-aaaattgaccctgtaattaaataa 16155862  T
Q  445 tatgtattctg 455  Q
     ||||||||||    
T  16155861 catgtattctg 16155851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 345 - 454
Target Start/End: Original strand, 39656625 - 39656733
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||| |||||||| |||||||||||| |||||||||||    
T  39656625 tcattttgtcaacaaaaatacaatttaaaatagggttattaattgaaattgaccacgtaatatacgtgaagtctg-aaaattgaccctgtaattaaataa 39656723  T
Q  445 tatgtattct 454  Q
     |||||||||    
T  39656724 catgtattct 39656733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 345 - 452
Target Start/End: Original strand, 16332998 - 16333104
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||| |||||||| |||||||||||| |||||||||||    
T  16332998 tcattttgtcaacaaaattacaatttaaaatagggttattaattgaaattgaccacgtaatatacgtgaagtctg-aaaattgaccctgtaattaaataa 16333096  T
Q  445 tatgtatt 452  Q
     |||||||    
T  16333097 catgtatt 16333104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 345 - 455
Target Start/End: Complemental strand, 19986513 - 19986404
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    |||||||||||||||| ||||||||||||||| | |||||||||||||||||||| |||||||||| |||||||| |||||||||||| |||||||||||    
T  19986513 tcattttgtcaacaaacgtacaatttaaaataggattattaattgaaattgaccacgtaatatacgtgaagtctg-aaaattgaccctgtaattaaataa 19986415  T
Q  445 tatgtattctg 455  Q
     ||||||||||    
T  19986414 catgtattctg 19986404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 345 - 454
Target Start/End: Complemental strand, 13819046 - 13818938
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||| ||||||| ||||||||||| | |||||||||||    
T  13819046 tcattttgtcaacaaaagtacaatttaaaatagggttattaattgaaattgactacgtaatatacgtgaagtct-aaaaattgaccatgtaattaaataa 13818948  T
Q  445 tatgtattct 454  Q
     |||||||||    
T  13818947 catgtattct 13818938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 345 - 455
Target Start/End: Complemental strand, 10036976 - 10036867
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| | | |||||||| |||||| ||||| |||||||||||    
T  10036976 tcattttgtcaacaaaagtacaatttaaaatagggttattaattgaaattgaccacgtaatacatgtgaagtctg-aaaattcaccctgtaattaaataa 10036878  T
Q  445 tatgtattctg 455  Q
     ||||||||||    
T  10036877 catgtattctg 10036867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 345 - 455
Target Start/End: Original strand, 26282415 - 26282524
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    ||||||| |||||||||||||||||||||||| ||||||||||| ||||| |||| |||||||||| |||||||| |||||||||||| |||||||||||    
T  26282415 tcattttatcaacaaaagtacaatttaaaatagggttattaatttaaattaaccacgtaatatacgtgaagtctg-aaaattgaccctgtaattaaataa 26282513  T
Q  445 tatgtattctg 455  Q
     ||||||||||    
T  26282514 catgtattctg 26282524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 345 - 455
Target Start/End: Original strand, 36292718 - 36292827
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||  |||||||| |||||||||||| |||||||||||    
T  36292718 tcattttatcaacaaaagtacaatttaaaatagggttattaattgaaattaaccacgtaatatacttgaagtctg-aaaattgaccctgtaattaaataa 36292816  T
Q  445 tatgtattctg 455  Q
     ||||||||||    
T  36292817 catgtattctg 36292827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 345 - 444
Target Start/End: Original strand, 1775476 - 1775574
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||| |||||||| |||||||| ||| |||||||||||    
T  1775476 tcattttgtcaacaaaagtgcaatttaaaatatggttattgattgaaattgaccacgtaatatacgtgaagtctg-aaaattgaacctgtaattaaataa 1775574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 345 - 444
Target Start/End: Complemental strand, 39435769 - 39435671
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||| ||||||| |||| |||||||||||    
T  39435769 tcattttatcaacaaaagtacaatttaaaatagggttattaattgaaattgaccacgtaatatacgtgaagtctg-aaaattgtccctgtaattaaataa 39435671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 383 - 455
Target Start/End: Original strand, 15959080 - 15959152
Alignment:
Q  383 ttaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataatatgtattctg 455  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  15959080 ttaattgaaattgaccatgtaatatacgcgaagtctgaaaaattaaccctgtaattaaataatatgtattctg 15959152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 345 - 452
Target Start/End: Original strand, 17331094 - 17331200
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    |||||||||||| ||||||||||||||||||| | ||||||||| ||||||||||||||||||| | |||||||| ||||||||| || |||||||||||    
T  17331094 tcattttgtcaataaaagtacaatttaaaataggattattaattaaaattgaccatgtaatatatgtgaagtctg-aaaattgactctgtaattaaataa 17331192  T
Q  445 tatgtatt 452  Q
     |||||||    
T  17331193 catgtatt 17331200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 345 - 455
Target Start/End: Complemental strand, 36292425 - 36292314
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgacc-atgtaatatacgcgaagtctgaaaaattgaccctat-aattaaat 442  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||| || |||||||||||| | ||||||||    
T  36292425 tcattttatcaacaaaagtacaatttaaaataaggttattaattgaaattgaccaatgtaatatacgtgaagtttg-aaaattgaccctgtaaattaaat 36292327  T
Q  443 aatatgtattctg 455  Q
     | ||||||||||    
T  36292326 cacatgtattctg 36292314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 345 - 417
Target Start/End: Complemental strand, 43069915 - 43069843
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtc 417  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  43069915 tcatttagtcaacaaaagtacaatttaaaatagggttattaattgaaattgaccatgtaatatacgtgaagtc 43069843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 345 - 452
Target Start/End: Original strand, 12277953 - 12278059
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    |||||||||||| ||||||||||||||||||| | ||||||||| ||||||||||||||||||| | |||||||| ||||||| || | |||||||||||    
T  12277953 tcattttgtcaataaaagtacaatttaaaataggattattaattaaaattgaccatgtaatatatgtgaagtctg-aaaattggccttgtaattaaataa 12278051  T
Q  445 tatgtatt 452  Q
     |||||||    
T  12278052 catgtatt 12278059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 357 - 455
Target Start/End: Original strand, 31500827 - 31500924
Alignment:
Q  357 caaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataatatgtattctg 455  Q
    |||||||||||||||||||| | | |||||||||| |||||||||||||||||| |||||||| ||||||| |||| ||||||||||| ||||| ||||    
T  31500827 caaaagtacaatttaaaataggataattaattgaagttgaccatgtaatatacgtgaagtctg-aaaattggccctgtaattaaataacatgtactctg 31500924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 345 - 421
Target Start/End: Complemental strand, 37255701 - 37255625
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaa 421  Q
    |||||||||||| |||| |||||||||||||| | ||||||||| ||||||||||||||||||||| ||||||||||    
T  37255701 tcattttgtcaataaaaatacaatttaaaataggattattaattaaaattgaccatgtaatatacgtgaagtctgaa 37255625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 345 - 452
Target Start/End: Complemental strand, 31681435 - 31681329
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    |||||||||||| |||| || ||||||||||| | ||||||||| ||||||||||||||||||| | |||||||| ||||||| || | |||||||||||    
T  31681435 tcattttgtcaataaaactataatttaaaataggattattaattaaaattgaccatgtaatatatgtgaagtctg-aaaattggccttgtaattaaataa 31681337  T
Q  445 tatgtatt 452  Q
     |||||||    
T  31681336 catgtatt 31681329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 345 - 452
Target Start/End: Complemental strand, 33431389 - 33431283
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    |||||||||||| |||| || ||||||||||| | ||||||||| ||||||||||||||||||| | |||||||| ||||||| || | |||||||||||    
T  33431389 tcattttgtcaataaaactataatttaaaataggattattaattaaaattgaccatgtaatatatgtgaagtctg-aaaattggccttgtaattaaataa 33431291  T
Q  445 tatgtatt 452  Q
     |||||||    
T  33431290 catgtatt 33431283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 386 - 444
Target Start/End: Complemental strand, 192823 - 192766
Alignment:
Q  386 attgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    ||||||||||||| |||||||||||  ||||||| |||||| ||||| |||||||||||    
T  192823 attgaaattgaccttgtaatatacgtaaagtctg-aaaattaaccctgtaattaaataa 192766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 376
Target Start/End: Complemental strand, 1280790 - 1280761
Alignment:
Q  347 attttgtcaacaaaagtacaatttaaaata 376  Q
    ||||||||||||||||||||||||||||||    
T  1280790 attttgtcaacaaaagtacaatttaaaata 1280761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 345 - 455
Target Start/End: Complemental strand, 32284 - 32175
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||| |||||| |||||||||||||||||    
T  32284 tcattttgtcaacaaaaatacaatttaaaatagggttattaattgaaattgaccatgtaatatacgtgaagcctg-aaaatttaccctataattaaataa 32186  T
Q  445 tatgtattctg 455  Q
     ||||||||||    
T  32185 catgtattctg 32175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 345 - 455
Target Start/End: Original strand, 40080839 - 40080948
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||| |||||||||| |||||||||||||    
T  40080839 tcattttgtcaacaaaagtacaatttaaaataaggttattaattgaaattgaccacgtaatatacgtgaagtctg-aaaattgaccatataattaaataa 40080937  T
Q  445 tatgtattctg 455  Q
     || |||||||    
T  40080938 catatattctg 40080948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 345 - 455
Target Start/End: Complemental strand, 35515065 - 35514956
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    ||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||| ||||| |||||||||||    
T  35515065 tcattttatcaacaaaaatacaatttaaaatagggttattaattgaaattgaccatgtaatatacgtgaagtctg-aaaatttaccctgtaattaaataa 35514967  T
Q  445 tatgtattctg 455  Q
     ||||||||||    
T  35514966 catgtattctg 35514956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 339 - 432
Target Start/End: Original strand, 1185601 - 1185694
Alignment:
Q  339 ggttcctcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccct 432  Q
    ||||||| |||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1185601 ggttccttattttgtcaacaaaagtgaaatttaaaatagggttattaattgaaattgaccatgtaatatacgtgaagtctgaaaaattgaccct 1185694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 345 - 455
Target Start/End: Original strand, 6268519 - 6268628
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||| |||||||| |||||||||| | |||||||||||    
T  6268519 tcattttatcaacaaaagtacaatttaaaatagggttattaattgaaattaaccacgtaatatacgtgaagtctg-aaaattgaccttgtaattaaataa 6268617  T
Q  445 tatgtattctg 455  Q
     ||||||||||    
T  6268618 catgtattctg 6268628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 345 - 455
Target Start/End: Complemental strand, 19391215 - 19391107
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    ||||||| |||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||| |||||||| |||||||||||| |||||||||||    
T  19391215 tcattttatcaacaaaagtacaatttaaaata-ggttattaactgaaattgaccacgtaatatacgtgaagtctg-aaaattgaccctgtaattaaataa 19391118  T
Q  445 tatgtattctg 455  Q
     ||||||||||    
T  19391117 catgtattctg 19391107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 345 - 455
Target Start/End: Original strand, 22967541 - 22967650
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||| ||||| || |||||||||||| |||||||||||    
T  22967541 tcattttatcaacaaaagtacaatttaaaatagggttattaattgaaattaaccacgtaatatacgtgaagtttg-aaaattgaccctgtaattaaataa 22967639  T
Q  445 tatgtattctg 455  Q
     ||||||||||    
T  22967640 catgtattctg 22967650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 345 - 455
Target Start/End: Original strand, 34083219 - 34083328
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||  ||| |||| |||||||||||| |||||||||||    
T  34083219 tcattttgtcaacaaaagtgcaatttaaaatagggttattaattgaaattgaccacgtaatatacttgaactctg-aaaattgaccctgtaattaaataa 34083317  T
Q  445 tatgtattctg 455  Q
     ||||||||||    
T  34083318 catgtattctg 34083328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 348 - 423
Target Start/End: Complemental strand, 45336924 - 45336849
Alignment:
Q  348 ttttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaa 423  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  45336924 ttttgtcaacaaaagtacaatttaaaatagggttattaattgaaattgaccatgtaatatacgtgaagtctgaaaa 45336849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 345 - 423
Target Start/End: Original strand, 19564614 - 19564692
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaa 423  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  19564614 tcattttgtcatcaaaagtacaatgtaaaatatggttattaattgaaattgaccatgtaatatacgtgaagtctgaaaa 19564692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 345 - 455
Target Start/End: Complemental strand, 39772860 - 39772751
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    ||||||| |||||||||| ||||||||||||| ||||||||||| ||||| |||| |||||||||| |||||||| |||||||||||| |||||||||||    
T  39772860 tcattttatcaacaaaaggacaatttaaaatagggttattaatttaaattaaccacgtaatatacgtgaagtctg-aaaattgaccctgtaattaaataa 39772762  T
Q  445 tatgtattctg 455  Q
     ||||||||||    
T  39772761 catgtattctg 39772751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 344 - 444
Target Start/End: Complemental strand, 5136363 - 5136264
Alignment:
Q  344 ctcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaata 443  Q
    |||| ||||||||||||| |||||||||||||| | |||||||||||||||||  |||||||||||| ||| ||||||||||||||||| ||||||||||    
T  5136363 ctcagtttgtcaacaaaaatacaatttaaaataggattattaattgaaattga-tatgtaatatacgtgaaatctgaaaaattgaccctgtaattaaata 5136265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 345 - 452
Target Start/End: Complemental strand, 45184049 - 45183943
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    |||||||||||| |||| |||||||||||||| | ||||||||| ||||||||||||||||||| | |||||||| ||||||| |||| |||||||||||    
T  45184049 tcattttgtcaataaaactacaatttaaaataggattattaattaaaattgaccatgtaatatatgtgaagtctg-aaaattggccctgtaattaaataa 45183951  T
Q  445 tatgtatt 452  Q
     |||||||    
T  45183950 catgtatt 45183943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 345 - 452
Target Start/End: Original strand, 6929992 - 6930098
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    |||||||||||| |||| |||||||||||||| | ||||||||| ||||| ||||||||||||  | |||||||| |||||||||||| |||||||||||    
T  6929992 tcattttgtcaataaaactacaatttaaaataggattattaattaaaatttaccatgtaatatgtgtgaagtctg-aaaattgaccctgtaattaaataa 6930090  T
Q  445 tatgtatt 452  Q
     |||||||    
T  6930091 catgtatt 6930098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 349 - 452
Target Start/End: Original strand, 11017372 - 11017474
Alignment:
Q  349 tttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataatatg 448  Q
    |||||||| ||||||||||||||||||| | ||||||||| |||| |||||||||||||| | |||||||| ||||||| |||| ||||||||||| |||    
T  11017372 tttgtcaataaaagtacaatttaaaataggattattaattaaaatcgaccatgtaatatatgtgaagtctg-aaaattggccctgtaattaaataacatg 11017470  T
Q  449 tatt 452  Q
    ||||    
T  11017471 tatt 11017474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 366 - 452
Target Start/End: Complemental strand, 33041998 - 33041913
Alignment:
Q  366 aatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataatatgtatt 452  Q
    ||||| ||||| | ||||||||| |||||||| |||||||||| | |||||||| ||||||| |||| ||||||||||| |||||||    
T  33041998 aattttaaataggattattaattaaaattgactatgtaatatatgtgaagtctg-aaaattggccctgtaattaaataacatgtatt 33041913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 345 - 405
Target Start/End: Complemental strand, 27936220 - 27936159
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaa-ttgaaattgaccatgtaat 405  Q
    |||||||||||||||||||| ||||||||||| ||||||||| |||||||| ||| ||||||    
T  27936220 tcattttgtcaacaaaagtaaaatttaaaatagggttattaatttgaaattaaccctgtaat 27936159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 345 - 455
Target Start/End: Original strand, 479554 - 479663
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    ||||||| |||||||||||||||||||||||| ||||||||||| ||||| |||| |||||||||| |||||||| |||||||||||| |||||||||||    
T  479554 tcattttatcaacaaaagtacaatttaaaatagggttattaatttaaattaaccacgtaatatacgtgaagtctg-aaaattgaccctgtaattaaataa 479652  T
Q  445 tatgtattctg 455  Q
     ||||||||||    
T  479653 catgtattctg 479663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 345 - 453
Target Start/End: Complemental strand, 18628 - 18522
Alignment:
Q  345 tcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaattgaccatgtaatatacgcgaagtctgaaaaattgaccctataattaaataa 444  Q
    ||||||| |||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||| |||||||| |||||||| ||| |||||||||||    
T  18628 tcattttatcaacaaaagtacaatttaatatagggttattaattgaaattgaccacgtaatatacgtgaagtctg-aaaattga-cctgtaattaaataa 18531  T
Q  445 tatgtattc 453  Q
     ||||||||    
T  18530 catgtattc 18522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 425
Target Start/End: Complemental strand, 9053 - 9014
Alignment:
Q  386 attgaaattgaccatgtaatatacgcgaagtctgaaaaat 425  Q
    ||||||||||||||||| ||||| ||||||||||||||||    
T  9053 attgaaattgaccatgttatatatgcgaagtctgaaaaat 9014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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