View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2092_low_8 (Length: 447)
Name: NF2092_low_8
Description: NF2092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2092_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 13 - 207
Target Start/End: Original strand, 6922399 - 6922593
Alignment:
| Q |
13 |
agcatagggatattgagaatggacaaactaatgggtttcagtatttgcaagaacctttcattcagcaaggaaaggatgcatgtaaagaagttggatcaga |
112 |
Q |
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| T |
6922399 |
agcataaggatattgagaatggagaaactaatgggtttcagtatttgcaagaacctttcattcaacaaggaaaggatgcatgtaaagaagttggatcaga |
6922498 |
T |
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| Q |
113 |
taaaagtgtgggaaatggatccattggaatggttttgcttagcacatttgttgctgtttgtggttctttttcatttggaacttgtgtaagtactt |
207 |
Q |
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| T |
6922499 |
taaaagtatggaaaatggatccattggaatggttctgcttagcacatttgttgctgtttgtggttctttttcatttggaacttgtgtaagtactt |
6922593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 273 - 429
Target Start/End: Original strand, 6922659 - 6922815
Alignment:
| Q |
273 |
atcattcggttttaacataaagaactttgataatctagagttcaatatgatgataatttaagtatagtcaatgattgttctaatcacgattcgaattcaa |
372 |
Q |
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| T |
6922659 |
atcattcggtttttacataaagaactttgataatctagagttcaatatgattataatttaagtataatcaatgattgttctaatcacgattcaaattcaa |
6922758 |
T |
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| Q |
373 |
gttcaccaaaatgaattgtgtttacgtgtgcattagattaaacatcatacattcatt |
429 |
Q |
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| T |
6922759 |
gttcaacaaaatgaattgtgtttacgtgtgcattagattaaacaacatacattcatt |
6922815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 125 - 203
Target Start/End: Original strand, 49131639 - 49131717
Alignment:
| Q |
125 |
aaatggatccattggaatggttttgcttagcacatttgttgctgtttgtggttctttttcatttggaacttgtgtaagt |
203 |
Q |
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| T |
49131639 |
aaatggatccattggaatggttctgctcagcacatttgttgctgtttgcggttctttttcatttggaacttgtgtaagt |
49131717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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