View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20930_high_2 (Length: 439)
Name: NF20930_high_2
Description: NF20930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20930_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 13 - 436
Target Start/End: Original strand, 8475850 - 8476271
Alignment:
| Q |
13 |
acatttatcatttattagtagaaatataaaatgtcattttaaaaagtacatagtttgacattaaacatgtaaaatttacgtttaatgtcatattaaatct |
112 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
8475850 |
acatttatcatttataagtacaaatataaaatgtcattttaa---gtacatagtttgacattaaacatgtacaatttacgtttaatgtcatattagatct |
8475946 |
T |
|
| Q |
113 |
atagtttgacatttaatctgtagtacatcttagacgccttccctttttattctttttataagtctttgcatgcaatataagcatagagaccaatccttaa |
212 |
Q |
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| T |
8475947 |
atagtttgacatttaatctgtagtacatcttagacgccttccctttttattctttttataagtcttagcatgcaatataagcatagagaccaatccttaa |
8476046 |
T |
|
| Q |
213 |
-tgtactcattcaccatctttcaatacatcattcaattatgaattctaaggatttttcttttatatcaagctctcaaatttattttctcttatcatctca |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
8476047 |
atgtactcattcaccatctttcaatacatcattcaattatgaattctaaggatttttcttttatatcaagctctcaagtttattttctcttatcatctca |
8476146 |
T |
|
| Q |
312 |
ttgatcccgtgatttgtaacgttatatttttcttattaagttcttataaaacaaattattctttcatttttattctcacaagcatgcaaataaaccaaat |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8476147 |
ttgatcccgtgatttgtaacgttatatttttcttattacgttcttataaaacaaattattctttcatttttattctcacaagcatgcaaataaaccaaat |
8476246 |
T |
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| Q |
412 |
gaaaatctgtccattgttctttctt |
436 |
Q |
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| T |
8476247 |
gaaaatctgtccattgttctttctt |
8476271 |
T |
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